##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546808_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2376793 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.583492967204126 31.0 31.0 33.0 30.0 34.0 2 31.958643432558073 31.0 31.0 34.0 30.0 34.0 3 32.03325405283506 33.0 31.0 34.0 30.0 34.0 4 35.761780685150114 37.0 35.0 37.0 35.0 37.0 5 35.70011776372616 37.0 35.0 37.0 33.0 37.0 6 35.755037565324365 37.0 35.0 37.0 33.0 37.0 7 36.07050508815871 37.0 35.0 37.0 35.0 37.0 8 35.94901701578556 37.0 35.0 37.0 35.0 37.0 9 37.715671915896756 39.0 38.0 39.0 35.0 39.0 10 37.357194757810205 39.0 37.0 39.0 34.0 39.0 11 37.080012436926566 39.0 37.0 39.0 33.0 39.0 12 36.403125976894074 38.0 35.0 39.0 33.0 39.0 13 36.15601821445957 38.0 35.0 39.0 32.0 39.0 14 37.12701905466736 39.0 35.0 41.0 32.0 41.0 15 37.34110332704615 39.0 35.0 41.0 33.0 41.0 16 37.438939781461826 39.0 35.0 41.0 33.0 41.0 17 37.327059192786244 39.0 35.0 41.0 33.0 41.0 18 37.23150564647405 39.0 35.0 41.0 32.0 41.0 19 37.18923061452975 39.0 35.0 41.0 32.0 41.0 20 37.09246703436101 39.0 35.0 41.0 32.0 41.0 21 36.94011047659598 38.0 35.0 41.0 32.0 41.0 22 36.89547427983842 38.0 35.0 41.0 32.0 41.0 23 36.805298568280875 38.0 35.0 41.0 32.0 41.0 24 36.78314518765412 38.0 35.0 41.0 32.0 41.0 25 36.692919829366716 38.0 35.0 41.0 32.0 41.0 26 36.64722674629217 38.0 35.0 41.0 32.0 41.0 27 36.54445843622057 38.0 35.0 41.0 31.0 41.0 28 36.53345579526698 38.0 35.0 40.0 31.0 41.0 29 36.45211257353922 38.0 35.0 40.0 31.0 41.0 30 36.45345640112538 38.0 35.0 40.0 31.0 41.0 31 36.30404709202695 38.0 35.0 40.0 31.0 41.0 32 36.1268297239179 38.0 35.0 41.0 30.0 41.0 33 36.040983375497994 38.0 35.0 41.0 30.0 41.0 34 35.837633315143556 38.0 35.0 41.0 30.0 41.0 35 35.71261948348047 38.0 35.0 40.0 29.0 41.0 36 35.61340848782372 38.0 35.0 40.0 29.0 41.0 37 35.352863290997576 38.0 34.0 40.0 27.0 41.0 38 35.45108429720216 38.0 34.0 40.0 28.0 41.0 39 35.33745260946157 37.0 34.0 40.0 27.0 41.0 40 35.21392018572926 37.0 34.0 40.0 27.0 41.0 41 35.14715585244487 37.0 34.0 40.0 27.0 41.0 42 35.15839620867278 37.0 34.0 40.0 27.0 41.0 43 35.051637227137576 37.0 34.0 40.0 27.0 41.0 44 34.91218166664072 37.0 34.0 40.0 27.0 41.0 45 34.89809041006095 36.0 34.0 40.0 27.0 41.0 46 34.71944128075099 36.0 34.0 40.0 26.0 41.0 47 34.60450236936914 36.0 34.0 40.0 25.0 41.0 48 34.47236717711639 36.0 34.0 40.0 25.0 41.0 49 34.52612448791292 36.0 34.0 40.0 26.0 41.0 50 34.391281445207895 35.0 34.0 40.0 25.0 41.0 51 33.78285445976995 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 5.0 12 10.0 13 14.0 14 43.0 15 79.0 16 239.0 17 480.0 18 1039.0 19 1982.0 20 3527.0 21 5506.0 22 8245.0 23 12278.0 24 16953.0 25 24259.0 26 32494.0 27 38578.0 28 42692.0 29 46909.0 30 54273.0 31 65541.0 32 82220.0 33 108728.0 34 200111.0 35 325054.0 36 160905.0 37 211932.0 38 328509.0 39 604053.0 40 130.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.202386577207186 23.849237186410427 28.70813739353827 14.24023884284412 2 31.26969828672501 25.21969729799776 30.59551252464981 12.915091890627412 3 29.46209451138572 24.566127550863705 32.42070302293889 13.55107491481168 4 26.551660157195013 27.748693302277484 30.786189626105433 14.91345691442208 5 23.542058563787425 31.563876197885133 29.952545299485482 14.94151993884196 6 22.127042615827293 39.23387522598728 27.66845913800655 10.970623020178872 7 86.46722705763607 4.520713415093363 7.0455862163848515 1.9664733108857186 8 87.84572320770046 3.3939850883101723 6.838710817475481 1.9215808865138864 9 83.31768900362799 5.363698058686642 8.460854605344261 2.8577583323411 10 48.6364609791429 25.35530018811062 15.852874019740046 10.155364813006432 11 40.98257610149474 21.91145800244279 22.31132454530117 14.794641350761298 12 36.68384247176763 21.63638146022813 25.75865883145903 15.921117236545209 13 24.39560365585055 31.557649319902907 26.452114256479213 17.594632767767322 14 17.76835424877135 34.10145519614034 30.30499500797924 17.825195547109065 15 17.917757246844804 23.93574030216346 41.79690869166983 16.34959375932191 16 21.760919019872578 21.37788187696615 38.80430479221371 18.056894310947566 17 21.63284728623822 21.659521885162064 28.546911741998564 28.160719086601148 18 24.726764173405087 24.01769947992947 31.493192718086938 19.762343628578506 19 28.389009896949375 25.820633096782093 26.19710677370726 19.59325023256127 20 30.82010086700861 24.917441274860703 25.887109226592305 18.37534863153838 21 26.110687804953987 26.0069345542502 28.622812335781873 19.25956530501394 22 24.52952360596821 23.21607308671811 28.91812623143875 23.33627707587493 23 22.322936831268013 26.96532680801399 27.913579348306733 22.79815701241126 24 22.43375842995162 24.17858854347013 33.95764797355091 19.430005053027337 25 21.006036285027765 25.054348443469838 32.6574085332631 21.2822067382393 26 20.064599651715568 31.036947685389514 27.206534182825344 21.69191848006957 27 19.548357808189436 29.512288196742414 30.765826052163565 20.173527942904578 28 18.116344166277838 27.494569363003002 35.18223926105471 19.206847209664453 29 19.27694166046433 26.009795552242032 34.420961354228155 20.29230143306548 30 21.68973065807582 27.015394272871053 31.680461866052283 19.61441320300085 31 27.90352378183544 25.19689346106287 26.71658827672414 20.182994480377552 32 29.004334832692624 26.029149362186775 26.954093183546064 18.012422621574533 33 27.505466399471896 26.02174442620792 26.504453690329782 19.9683354839904 34 21.803581548750774 27.08877045666156 29.259131947965177 21.84851604662249 35 21.642145529711673 26.772041149565823 30.353463679840857 21.232349640881644 36 27.930366674758805 26.176238317766842 26.75319222161964 19.140202785854722 37 22.59511030199096 30.39982867670849 27.417280343723665 19.587780677576884 38 22.646061310345495 30.910727185749877 24.485009843095295 21.958201660809333 39 22.564985676076965 29.560798942103915 26.49153712586666 21.382678255952452 40 24.068440120784604 26.512615949306483 26.077870475047682 23.341073454861235 41 20.29192277156656 25.594698402427134 27.351182875412373 26.76219595059393 42 23.068437175639612 26.59739405156444 25.81415377780059 24.520014994995357 43 22.720152743633964 26.818027484934532 26.166224824795425 24.295594946636076 44 21.403336344393477 28.959821069819714 27.69610142742763 21.940741158359184 45 20.675843457970466 31.87732377199024 24.742247221360884 22.70458554867841 46 23.032043598243515 29.939250073523443 26.71970171571525 20.309004612517793 47 22.417181470998948 27.862291751953155 27.413577875734234 22.30694890131366 48 23.56848072171199 25.302035137262692 29.34916923770812 21.7803149033172 49 22.070075096989935 24.175601324978658 30.76666752216116 22.987656055870243 50 20.733694520305303 29.79287636744134 27.432510950680182 22.040918161573178 51 19.994799715414846 31.27701907570411 26.20510073868444 22.523080470196604 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1266.0 1 2684.5 2 4103.0 3 14455.0 4 24807.0 5 17398.5 6 9990.0 7 10007.5 8 10025.0 9 10363.0 10 10701.0 11 10802.0 12 10903.0 13 10341.5 14 9780.0 15 9652.0 16 9524.0 17 9245.5 18 8967.0 19 8625.5 20 8284.0 21 9181.5 22 10079.0 23 10492.0 24 10905.0 25 13233.5 26 19203.5 27 22845.0 28 26358.5 29 29872.0 30 34969.0 31 40066.0 32 44826.0 33 49586.0 34 57687.0 35 65788.0 36 68372.0 37 70956.0 38 81885.5 39 92815.0 40 117255.5 41 141696.0 42 163390.5 43 185085.0 44 189807.5 45 194530.0 46 186250.0 47 177970.0 48 175308.5 49 172647.0 50 169931.5 51 167216.0 52 156743.0 53 146270.0 54 136912.0 55 127554.0 56 123325.5 57 119097.0 58 113217.0 59 107337.0 60 101846.5 61 96356.0 62 86050.5 63 75745.0 64 65062.0 65 54379.0 66 44050.5 67 33722.0 68 28649.5 69 23577.0 70 19924.0 71 16271.0 72 13022.0 73 9773.0 74 7541.5 75 4213.5 76 3117.0 77 2167.5 78 1218.0 79 916.5 80 615.0 81 437.0 82 259.0 83 193.0 84 127.0 85 87.5 86 48.0 87 32.5 88 17.0 89 18.0 90 19.0 91 12.0 92 5.0 93 4.0 94 3.0 95 4.5 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2376793.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.739338501619322 #Duplication Level Percentage of deduplicated Percentage of total 1 82.21441232687079 15.406437023049364 2 5.9892471554988385 2.244690596335068 3 1.8410365109294404 1.034994191164409 4 0.9553024359863698 0.7160694287748044 5 0.62315684836644 0.5838773560570492 6 0.4330073758645385 0.4868563074014098 7 0.3675846515133414 0.48218052488957963 8 0.3011356173661321 0.4514465814974451 9 0.23284601875250283 0.39270423277417965 >10 3.8384817055851514 18.595940511320862 >50 2.0110653299712236 27.416356908414492 >100 1.1886679054179492 30.96267508149787 >500 0.00315475834899165 0.40863264614446015 >1k 6.760196462124964E-4 0.23292525329470312 >5k 0.0 0.0 >10k+ 2.2533988207083214E-4 0.584213357384376 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13835 0.582086870838142 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3181 0.13383580311789878 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.207349987988016E-5 0.0 0.0 0.011191550968048122 0.0 2 4.207349987988016E-5 0.0 0.0 0.03462649040114137 0.0 3 4.207349987988016E-5 0.0 0.0 0.05326505084792828 0.0 4 4.207349987988016E-5 0.0 0.0 0.08536713125627685 0.0 5 4.207349987988016E-5 0.0 0.0 0.15979515254378485 0.0 6 4.207349987988016E-5 0.0 0.0 0.26712465073735914 0.0 7 4.207349987988016E-5 0.0 0.0 0.3460545365120143 0.0 8 4.207349987988016E-5 0.0 0.0 0.5170833135237272 0.0 9 4.207349987988016E-5 0.0 0.0 0.6039230172757998 0.0 10 4.207349987988016E-5 0.0 0.0 0.7366228358969418 0.0 11 4.207349987988016E-5 0.0 0.0 0.8607396605425882 0.0 12 4.207349987988016E-5 0.0 0.0 0.9679429382365229 0.0 13 4.207349987988016E-5 0.0 0.0 1.0119938926107575 0.0 14 4.207349987988016E-5 0.0 0.0 1.0300013505593462 0.0 15 4.207349987988016E-5 0.0 0.0 1.0553716709869139 0.0 16 4.207349987988016E-5 0.0 0.0 1.1085105013352026 0.0 17 4.207349987988016E-5 0.0 0.0 1.1726725886520197 0.0 18 4.207349987988016E-5 0.0 0.0 1.2585446019068551 0.0 19 4.207349987988016E-5 0.0 0.0 1.3109681827571857 0.0 20 4.207349987988016E-5 0.0 0.0 1.3697448620893784 0.0 21 4.207349987988016E-5 0.0 0.0 1.4421533553826522 0.0 22 4.207349987988016E-5 0.0 0.0 1.5223875196535837 0.0 23 4.207349987988016E-5 0.0 0.0 1.6060717109146652 0.0 24 4.207349987988016E-5 0.0 0.0 1.6693502547340051 0.0 25 4.207349987988016E-5 0.0 0.0 1.7257708180729243 0.0 26 4.207349987988016E-5 0.0 0.0 1.7843792034055974 0.0 27 4.207349987988016E-5 0.0 0.0 1.8425247802395917 0.0 28 4.207349987988016E-5 0.0 0.0 1.9099686005470395 0.0 29 4.207349987988016E-5 0.0 0.0 1.9875521343255387 0.0 30 4.207349987988016E-5 0.0 0.0 2.0786833350653593 0.0 31 8.414699975976032E-5 0.0 0.0 2.164723642319714 0.0 32 8.414699975976032E-5 0.0 0.0 2.241213265101336 0.0 33 8.414699975976032E-5 0.0 0.0 2.3229620753679434 0.0 34 8.414699975976032E-5 0.0 0.0 2.40832920662422 0.0 35 8.414699975976032E-5 0.0 0.0 2.5107781788317283 0.0 36 8.414699975976032E-5 0.0 0.0 2.6005630275753924 0.0 37 8.414699975976032E-5 0.0 0.0 2.6964485338016395 0.0 38 8.414699975976032E-5 0.0 0.0 2.8221220779428413 0.0 39 8.414699975976032E-5 0.0 0.0 3.02634684635978 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGT 30 2.1664855E-6 44.999996 41 GTATGCG 115 0.0 43.04348 1 CGTTTTT 7895 0.0 42.891068 1 ATACGTT 55 6.184564E-11 40.909092 45 ACGGGTC 170 0.0 39.705883 5 ATTAGCG 165 0.0 39.545452 1 CGGTCTA 330 0.0 39.545452 31 TCGATAG 80 0.0 39.375 1 GACCGAT 715 0.0 39.335663 9 CTCGAGG 150 0.0 39.0 2 CTAACGG 220 0.0 38.86364 2 ATTCGAC 35 6.2511044E-6 38.57143 18 GTACGAT 35 6.2511044E-6 38.57143 42 AACGGGA 705 0.0 38.297874 4 CACGACG 340 0.0 37.72059 26 ATAGGGA 2295 0.0 37.54902 4 TACGGGA 660 0.0 37.5 4 CTATTCG 30 1.1402889E-4 37.499996 1 CGAGGGT 345 0.0 37.173912 4 TTTAGCG 170 0.0 37.058826 1 >>END_MODULE