##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546807_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 7892338 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.609152319629494 31.0 31.0 33.0 30.0 34.0 2 32.00658423397478 33.0 31.0 34.0 30.0 34.0 3 31.976998831018133 33.0 31.0 34.0 30.0 34.0 4 35.769652668195405 37.0 35.0 37.0 35.0 37.0 5 35.73612673456205 37.0 35.0 37.0 33.0 37.0 6 35.80038665348595 37.0 35.0 37.0 35.0 37.0 7 36.1364384039305 37.0 35.0 37.0 35.0 37.0 8 36.03148420658112 37.0 35.0 37.0 35.0 37.0 9 37.841027842446685 39.0 38.0 39.0 35.0 39.0 10 37.32993556535465 39.0 37.0 39.0 34.0 39.0 11 37.18053547630626 39.0 37.0 39.0 34.0 39.0 12 36.87089985248984 39.0 35.0 39.0 33.0 39.0 13 36.75775315248789 39.0 35.0 39.0 33.0 39.0 14 37.898280332139855 40.0 36.0 41.0 33.0 41.0 15 38.02675873739822 40.0 36.0 41.0 33.0 41.0 16 38.07174375958049 40.0 36.0 41.0 33.0 41.0 17 37.96903148344635 40.0 36.0 41.0 33.0 41.0 18 37.76895211533008 39.0 36.0 41.0 33.0 41.0 19 37.604281773031005 39.0 36.0 41.0 33.0 41.0 20 37.400573949063 39.0 35.0 41.0 33.0 41.0 21 37.28754065018503 39.0 35.0 41.0 33.0 41.0 22 37.25918796179282 39.0 35.0 41.0 33.0 41.0 23 37.13483900461435 39.0 35.0 41.0 32.0 41.0 24 37.07767229431887 39.0 35.0 41.0 32.0 41.0 25 36.99733070225832 39.0 35.0 41.0 32.0 41.0 26 36.98189649252224 39.0 35.0 41.0 32.0 41.0 27 36.890343520513184 39.0 35.0 41.0 32.0 41.0 28 36.865232710509865 38.0 35.0 41.0 32.0 41.0 29 36.75605441632125 38.0 35.0 41.0 32.0 41.0 30 36.67164128044187 38.0 35.0 41.0 31.0 41.0 31 36.45645054735365 38.0 35.0 41.0 31.0 41.0 32 36.09870091726938 38.0 35.0 41.0 30.0 41.0 33 35.794347251726926 39.0 35.0 41.0 28.0 41.0 34 35.410449603146745 38.0 35.0 41.0 25.0 41.0 35 35.14950436740038 38.0 35.0 41.0 23.0 41.0 36 35.01334053356559 38.0 35.0 41.0 23.0 41.0 37 34.73830859752839 38.0 34.0 41.0 21.0 41.0 38 34.81535142058031 38.0 34.0 41.0 22.0 41.0 39 34.69830308838775 38.0 34.0 41.0 21.0 41.0 40 34.59284561811722 38.0 34.0 40.0 21.0 41.0 41 34.50218604423683 38.0 34.0 40.0 20.0 41.0 42 34.50971727262568 38.0 34.0 40.0 20.0 41.0 43 34.41585598589417 38.0 34.0 40.0 19.0 41.0 44 34.26796660254541 38.0 34.0 40.0 18.0 41.0 45 34.25520650534734 38.0 34.0 40.0 20.0 41.0 46 34.084240310032335 38.0 34.0 40.0 18.0 41.0 47 33.98698193108303 37.0 33.0 40.0 18.0 41.0 48 33.83564743425839 37.0 33.0 40.0 18.0 41.0 49 33.889818961124064 37.0 33.0 40.0 18.0 41.0 50 33.77990729743202 37.0 33.0 40.0 18.0 41.0 51 33.21499003210455 36.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 3.0 10 6.0 11 7.0 12 11.0 13 17.0 14 64.0 15 155.0 16 515.0 17 1461.0 18 3463.0 19 7125.0 20 12888.0 21 20740.0 22 31923.0 23 48112.0 24 74453.0 25 120125.0 26 171939.0 27 194335.0 28 185250.0 29 172544.0 30 175832.0 31 198154.0 32 237144.0 33 300711.0 34 492811.0 35 781333.0 36 518782.0 37 679023.0 38 1126370.0 39 2336495.0 40 545.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.318688581254378 23.19575010598887 27.43584980775025 20.049711505006503 2 35.75754104803925 23.929740464739346 28.798855294844188 11.513863192377215 3 25.648470706652454 23.625686076800058 38.63406508945765 12.091778127089842 4 23.57260928257254 25.278605655257035 37.85961777105846 13.289167291111962 5 21.73652471548988 29.812838730424367 35.95427615999213 12.496360394093612 6 19.459328781914813 38.11201446263452 32.54605922858347 9.882597526867198 7 82.69586274688186 3.0729677314884385 12.984124602874331 1.2470449187553803 8 84.21301773948353 2.2941237438133038 12.421693039502363 1.071165477200799 9 80.04876375036143 3.582309830116247 14.384837547504933 1.9840888720173921 10 35.59662548664287 22.9094851234197 30.68097184889953 10.812917541037903 11 31.409678602208878 22.932393417514557 30.013552384603905 15.644375595672663 12 28.93510136033201 22.482374677820438 31.7093870029388 16.873136958908756 13 22.335954187466374 26.99269848807793 32.92550319056279 17.745844133892895 14 17.950118203249783 29.44597659147391 34.633121389377905 17.970783815898407 15 17.49707121007742 25.249108692506578 40.99026169431669 16.26355840309931 16 20.743434961857943 22.94316335666313 39.81113074478057 16.502270936698352 17 20.72881318564917 23.055183394324978 33.70830037943129 22.507703040594564 18 21.97047313483026 24.078340283956415 35.86987784861723 18.081308732596096 19 23.731180798389527 25.252795812850387 33.086228694209495 17.929794694550587 20 25.244990774596832 24.58682078745234 32.85690501344469 17.311283424506147 21 22.769222504155294 25.115738834297265 34.93502178948747 17.180016872059962 22 22.578543899158905 22.12524349565363 35.228192203628375 20.06802040155908 23 19.927517042478414 25.112026372920166 35.10414784567006 19.856308738931354 24 19.3539607654918 24.823265298571854 38.03222821931853 17.790545716617814 25 19.066593447974476 26.237687742212763 35.82696280873931 18.868756001073447 26 18.73301675625144 29.594031578475228 32.67139597923961 19.00155568603372 27 18.33366741262222 28.180863515982207 35.46167181385288 18.023797257542697 28 16.982496188075068 27.152461032459584 38.495120203924365 17.369922575540986 29 17.877630177521542 25.635584791224098 37.494326776172024 18.992458255082333 30 19.164549212159944 26.040661208377035 36.22907432499723 18.565715254465786 31 23.12162758361337 25.354806142362378 33.02068411160292 18.502882162421326 32 23.367308901367377 26.72325995161383 32.402882390490625 17.50654875652817 33 22.43833196196108 26.927077882371485 31.775539770344352 18.85905038532308 34 19.73047783812604 27.579900911491627 32.46180029289166 20.227820957490668 35 19.951008180338956 27.833602666282157 32.2090108152996 20.006378338079287 36 23.36900675059786 27.38537046943504 30.217813783444146 19.027808996522957 37 20.798627732365237 29.4878526489869 30.56152688848349 19.15199273016437 38 20.51980034306691 30.254520270165823 29.109941819521666 20.1157375672456 39 20.572674409028096 29.13766490994177 29.837191463416797 20.452469217613338 40 21.791704815480532 27.50751424989655 29.929458165628485 20.771322768994434 41 19.143009333862793 27.307662190848898 30.669986510967977 22.879341964320332 42 21.023820824703655 27.83837945105747 29.241525134883982 21.896274589354892 43 21.327773848509782 28.014271563128695 29.159230129272213 21.498724459089306 44 20.60187994989571 29.495923768090016 29.66882563823293 20.23337064378135 45 19.595055356220172 30.984912202189008 28.352181571544456 21.067850870046367 46 21.23513970131538 29.480757159665487 29.426717406172926 19.85738573284621 47 21.12235943265481 28.271964530662526 30.15636177771403 20.449314258968634 48 21.192313355053976 27.27563112476937 30.843382531260065 20.688672988916593 49 20.755953432303585 26.798079352404823 31.16949628867897 21.27647092661262 50 19.435242129771936 29.18047858568652 30.96382846249109 20.420450822050448 51 19.423445878775087 29.983535930670985 29.531363203147155 21.061654987406776 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4854.0 1 8089.0 2 11324.0 3 110028.0 4 208732.0 5 146155.0 6 83578.0 7 83068.5 8 82559.0 9 84195.0 10 85831.0 11 85845.0 12 85859.0 13 82676.5 14 79494.0 15 75865.5 16 72237.0 17 67894.5 18 63552.0 19 59770.0 20 55988.0 21 54151.0 22 52314.0 23 56218.0 24 60122.0 25 65560.5 26 77790.0 27 84581.0 28 98164.5 29 111748.0 30 131966.0 31 152184.0 32 171507.0 33 190830.0 34 212264.5 35 233699.0 36 258070.0 37 282441.0 38 317011.5 39 351582.0 40 415871.0 41 480160.0 42 526688.5 43 573217.0 44 589828.5 45 606440.0 46 608839.0 47 611238.0 48 590114.0 49 568990.0 50 557984.5 51 546979.0 52 518557.5 53 490136.0 54 452161.0 55 414186.0 56 370568.5 57 326951.0 58 301281.0 59 275611.0 60 241707.5 61 207804.0 62 176124.5 63 144445.0 64 118742.5 65 93040.0 66 74025.5 67 55011.0 68 43117.5 69 31224.0 70 25175.0 71 19126.0 72 15193.0 73 11260.0 74 8904.0 75 4833.0 76 3118.0 77 2216.5 78 1315.0 79 916.0 80 517.0 81 364.0 82 211.0 83 178.5 84 146.0 85 103.0 86 60.0 87 58.5 88 57.0 89 39.5 90 22.0 91 15.0 92 8.0 93 7.0 94 6.0 95 3.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 7892338.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.74916783097823 #Duplication Level Percentage of deduplicated Percentage of total 1 83.09494264118814 16.41055968126334 2 6.963402278960336 2.7504280056360795 3 2.0671534823550926 1.2247368316626543 4 1.0346210186642235 0.8173161655622964 5 0.6552314446787083 0.6470137884547067 6 0.4824130919752 0.5716354270367616 7 0.3618227787247638 0.5001989147474382 8 0.2871068504517347 0.45360970999959005 9 0.23235736184375688 0.41299780822341225 >10 2.562697295439934 11.757161071028348 >50 0.9753210367807182 14.009759565468261 >100 1.2697427542920021 46.65732761469506 >500 0.01047279604432006 1.270108792006224 >1k 0.0025858748582094394 0.8527353336579601 >5k 6.464687145523339E-5 0.06725771043568776 >10k+ 6.464687145523339E-5 1.5971535801221848 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 125098 1.5850562913043005 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016725081971907436 0.0 2 0.0 0.0 0.0 0.05452123312508917 0.0 3 0.0 0.0 0.0 0.0915824943128386 0.0 4 0.0 0.0 0.0 0.1282763105178719 0.0 5 0.0 0.0 0.0 0.23080613121232263 0.0 6 0.0 0.0 0.0 0.4059380122848261 0.0 7 0.0 0.0 0.0 0.5397259975434402 0.0 8 0.0 0.0 0.0 0.7742445901328605 0.0 9 0.0 0.0 0.0 0.9220841783512059 0.0 10 0.0 0.0 0.0 1.1165766088578568 0.0 11 0.0 0.0 0.0 1.2898839355334248 0.0 12 0.0 0.0 0.0 1.409658329382244 0.0 13 1.2670516645384422E-5 0.0 0.0 1.4665489491200199 0.0 14 1.2670516645384422E-5 0.0 0.0 1.496945518552297 0.0 15 2.5341033290768844E-5 0.0 0.0 1.5283937408661412 0.0 16 2.5341033290768844E-5 0.0 0.0 1.5928613295578573 0.0 17 2.5341033290768844E-5 0.0 0.0 1.665526742519137 0.0 18 2.5341033290768844E-5 0.0 0.0 1.7636092118710578 0.0 19 2.5341033290768844E-5 0.0 0.0 1.821298074157493 0.0 20 2.5341033290768844E-5 0.0 0.0 1.8817110975226858 0.0 21 2.5341033290768844E-5 0.0 0.0 1.9629037681863093 0.0 22 2.5341033290768844E-5 0.0 0.0 2.0547016612821194 0.0 23 2.5341033290768844E-5 0.0 0.0 2.152213957384998 0.0 24 3.801154993615327E-5 0.0 0.0 2.2273754621254183 0.0 25 3.801154993615327E-5 0.0 0.0 2.2994326902877193 0.0 26 3.801154993615327E-5 0.0 0.0 2.3695766704365675 0.0 27 3.801154993615327E-5 0.0 0.0 2.446942845073285 0.0 28 3.801154993615327E-5 0.0 0.0 2.5246637941760732 0.0 29 3.801154993615327E-5 0.0 0.0 2.6209597206809945 0.0 30 3.801154993615327E-5 0.0 0.0 2.7275821182519047 0.0 31 3.801154993615327E-5 0.0 0.0 2.8212172362612953 0.0 32 3.801154993615327E-5 1.2670516645384422E-5 0.0 2.912698366440971 0.0 33 3.801154993615327E-5 1.2670516645384422E-5 0.0 3.0040527914541926 0.0 34 3.801154993615327E-5 1.2670516645384422E-5 0.0 3.1008555386249297 0.0 35 3.801154993615327E-5 1.2670516645384422E-5 0.0 3.213648477802142 0.0 36 3.801154993615327E-5 1.2670516645384422E-5 0.0 3.3207270139722853 0.0 37 5.068206658153769E-5 1.2670516645384422E-5 0.0 3.42733674102655 0.0 38 5.068206658153769E-5 1.2670516645384422E-5 0.0 3.552850878915728 0.0 39 6.33525832269221E-5 1.2670516645384422E-5 0.0 3.7393862249690777 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 82140 0.0 44.170017 1 CGGTCTA 625 0.0 39.960003 31 GCGATAT 865 0.0 39.53757 9 ACGGGTA 1750 0.0 39.471428 5 TATAGCG 535 0.0 39.11215 1 GTTTTTT 96180 0.0 38.522305 2 CACGACG 650 0.0 38.423077 26 GGGCGAT 9565 0.0 38.29587 7 AGGGCGA 5300 0.0 37.740566 6 GGCGATA 2200 0.0 37.738636 8 TACGGGT 2280 0.0 37.5 4 CGACGGT 705 0.0 37.340427 28 TAGGGTA 6780 0.0 37.134956 5 TCACGAC 670 0.0 36.940296 25 GCGGGAT 3180 0.0 36.650944 5 TAGGGCG 2105 0.0 36.55582 5 GCGCGAC 790 0.0 36.455696 9 CGTAAGG 1005 0.0 36.268658 2 TGGGCGA 3340 0.0 36.242516 6 ATAGGGT 6885 0.0 36.24183 4 >>END_MODULE