##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546806_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3370548 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56582965143947 31.0 31.0 33.0 30.0 34.0 2 31.941427328731116 31.0 31.0 34.0 30.0 34.0 3 32.0032638609508 33.0 31.0 34.0 30.0 34.0 4 35.73239188404972 37.0 35.0 37.0 33.0 37.0 5 35.6736625616962 37.0 35.0 37.0 33.0 37.0 6 35.72824656406021 37.0 35.0 37.0 33.0 37.0 7 36.04843248041565 37.0 35.0 37.0 35.0 37.0 8 35.913684658993134 37.0 35.0 37.0 35.0 37.0 9 37.63513292200556 39.0 37.0 39.0 35.0 39.0 10 37.35357336551801 39.0 37.0 39.0 34.0 39.0 11 37.08817705607515 39.0 37.0 39.0 33.0 39.0 12 36.47031402608715 39.0 35.0 39.0 33.0 39.0 13 36.2653802883092 39.0 35.0 39.0 32.0 39.0 14 37.27531873155345 39.0 35.0 41.0 32.0 41.0 15 37.44590760908908 39.0 35.0 41.0 33.0 41.0 16 37.5218041695297 39.0 35.0 41.0 33.0 41.0 17 37.422007044551805 39.0 35.0 41.0 33.0 41.0 18 37.296849948435685 39.0 35.0 41.0 32.0 41.0 19 37.25068000811738 39.0 35.0 41.0 32.0 41.0 20 37.15782893464208 39.0 35.0 41.0 32.0 41.0 21 37.02337987769348 39.0 35.0 41.0 32.0 41.0 22 36.98168191047865 39.0 35.0 41.0 32.0 41.0 23 36.885117790934885 38.0 35.0 41.0 32.0 41.0 24 36.84890943549832 38.0 35.0 41.0 32.0 41.0 25 36.762624356632806 38.0 35.0 41.0 31.0 41.0 26 36.69657604638771 38.0 35.0 41.0 31.0 41.0 27 36.5946439570064 38.0 35.0 41.0 31.0 41.0 28 36.546796247969176 38.0 35.0 40.0 31.0 41.0 29 36.45948403642375 38.0 35.0 40.0 31.0 41.0 30 36.456540301458396 38.0 35.0 40.0 31.0 41.0 31 36.33356118945643 38.0 35.0 41.0 31.0 41.0 32 36.145717550973906 38.0 35.0 41.0 30.0 41.0 33 36.04982483560537 38.0 35.0 41.0 30.0 41.0 34 35.837375999392385 38.0 35.0 41.0 29.0 41.0 35 35.70417006374038 38.0 35.0 41.0 29.0 41.0 36 35.59848457876879 38.0 35.0 40.0 28.0 41.0 37 35.338688248913826 38.0 34.0 40.0 27.0 41.0 38 35.42830572357967 38.0 34.0 40.0 28.0 41.0 39 35.30505454899322 38.0 34.0 40.0 27.0 41.0 40 35.155545329720866 37.0 34.0 40.0 26.0 41.0 41 35.08156922850527 37.0 34.0 40.0 26.0 41.0 42 35.07639885264948 37.0 34.0 40.0 26.0 41.0 43 34.97660944155075 37.0 34.0 40.0 26.0 41.0 44 34.8400951417989 37.0 34.0 40.0 26.0 41.0 45 34.82419743021016 37.0 34.0 40.0 26.0 41.0 46 34.65669974140704 36.0 34.0 40.0 25.0 41.0 47 34.53124032056508 36.0 34.0 40.0 24.0 41.0 48 34.38074609826058 36.0 34.0 40.0 24.0 41.0 49 34.41646343561937 36.0 34.0 40.0 24.0 41.0 50 34.2811094813069 35.0 34.0 40.0 24.0 41.0 51 33.68509334387168 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 9.0 11 9.0 12 17.0 13 32.0 14 71.0 15 113.0 16 280.0 17 685.0 18 1538.0 19 2850.0 20 5085.0 21 8184.0 22 12530.0 23 17550.0 24 25083.0 25 35660.0 26 47625.0 27 55747.0 28 60765.0 29 66918.0 30 77755.0 31 93102.0 32 116598.0 33 154256.0 34 272134.0 35 429222.0 36 238763.0 37 316602.0 38 479908.0 39 851269.0 40 188.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.561501571851224 23.022606412963114 28.424279968717254 13.991612046468408 2 32.90512403324326 24.485454590766842 29.401331771569488 13.208089604420408 3 30.170168174433353 24.912655152811947 31.294584738149407 13.622591934605294 4 26.99753867917027 26.892303566067 30.643503667652855 15.466654087109871 5 23.744002458947328 31.37107081697101 29.63900825622421 15.245918467857452 6 22.39890961351092 39.53867442326885 27.255627274852635 10.806788688367588 7 85.23091793975341 4.751274866876247 7.707352038896939 2.310455154473397 8 85.75801323701666 4.0994224084629565 7.683943382500412 2.45862097201998 9 80.46724152867723 6.207744259983836 9.529132948114075 3.7958812632248526 10 48.17442148873121 25.004776671330596 15.254374066175588 11.566427773762605 11 39.566266375675404 23.04138674185919 22.455398944029277 14.936947938436123 12 34.89287201962411 22.274300796191003 26.676492961975324 16.156334222209566 13 24.217634639827114 31.017537800974797 27.30677622748586 17.458051331712234 14 18.881499388230043 33.3945103288842 30.30483470343695 17.4191555794488 15 18.262846279002705 23.235212790323708 41.522832488960255 16.979108441713336 16 21.836419478375625 21.121609898449748 38.52373560619816 18.518235016976465 17 22.518919772096407 21.127959014379858 28.606535198430638 27.746586015093094 18 24.761581796194566 23.69852024062556 31.343449195798428 20.196448767381447 19 28.27329561839796 24.71598090280868 27.177390738835346 19.833332739958013 20 29.715553672577872 24.580572654654375 26.169869113271787 19.534004559495962 21 26.29471528071993 25.16623409605797 29.004897719895993 19.534152903326106 22 24.646318640173646 23.722729953704857 28.87248601711057 22.758465389010926 23 22.978963658135115 26.27095059913106 27.962900988207256 22.787184754526564 24 22.809020966323576 24.08976225824406 33.12378283887368 19.977433936558683 25 22.04674136075202 25.246636451995343 30.78128541708945 21.925336770163188 26 20.65272472013453 29.667905634336016 27.879620761965118 21.799748883564334 27 20.93502302889619 28.46637994771177 30.337885708792754 20.260711314599288 28 19.789007603511358 26.36283476752148 34.23920976648308 19.608947862484083 29 20.57131362615219 25.946878667801197 32.849613772003835 20.63219393404277 30 22.439555822970032 26.433980468457946 30.974814777893684 20.151648930678334 31 28.0921084642616 24.482339370333843 26.75897213153469 20.666580033869863 32 28.288248676476346 26.182715688962148 26.912893689690815 18.616141944870684 33 26.83394510328884 25.72928793774781 26.792201149486672 20.644565809476678 34 22.529748871696828 27.165997932680387 29.107670325418894 21.196582870203894 35 23.005012834708182 26.600540920942233 29.173534986002274 21.220911258347307 36 27.439276936569364 26.067126176514915 26.813117629536798 19.68047925737892 37 23.338460096103066 29.545996674724705 27.09191502390709 20.023628205265137 38 24.09237310965457 29.814291325920887 24.53239057862401 21.56094498580053 39 23.235153452791653 28.2372777364393 26.555830090537206 21.971738720231844 40 24.021316415016194 25.75601949593953 27.039519983100668 23.183144105943605 41 20.62433171104521 25.49270919743614 27.638176344024767 26.24478274749388 42 23.575988236927646 26.22579473723561 26.365979656720512 23.83223736911624 43 23.185784626120146 25.69448647519632 27.185401305663053 23.934327593020484 44 21.64110999160967 28.344530325632512 27.864311678694385 22.150048004063432 45 20.954960439667378 30.784341299990388 25.87576263563076 22.38493562471147 46 23.39750094049988 28.559094841550987 27.250939609820122 20.792464608129006 47 23.307574910667345 26.806560832244493 27.963049332037404 21.922814925050762 48 23.817877686358422 25.301048968891703 28.813741860374044 22.067331484375835 49 22.647385529000033 24.79463280155037 29.795451659492763 22.762530009956837 50 21.26674950186142 29.056432366487584 27.61684450125024 22.059973630400755 51 20.94840364237507 29.952577444379962 26.292875817226157 22.806143096018808 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2183.0 1 3972.5 2 5762.0 3 20634.0 4 35506.0 5 24928.0 6 14350.0 7 14679.5 8 15009.0 9 15352.5 10 15696.0 11 15455.0 12 15214.0 13 14841.5 14 14469.0 15 14149.5 16 13830.0 17 13246.0 18 12662.0 19 12378.5 20 12095.0 21 12587.5 22 13080.0 23 15714.5 24 18349.0 25 20737.0 26 26059.0 27 28993.0 28 35862.0 29 42731.0 30 47600.5 31 52470.0 32 59911.5 33 67353.0 34 76570.5 35 85788.0 36 93369.0 37 100950.0 38 115791.0 39 130632.0 40 159371.5 41 188111.0 42 217889.5 43 247668.0 44 252272.5 45 256877.0 46 252155.5 47 247434.0 48 238796.0 49 230158.0 50 234367.5 51 238577.0 52 228941.5 53 219306.0 54 201482.5 55 183659.0 56 177563.5 57 171468.0 58 164621.5 59 157775.0 60 149863.5 61 141952.0 62 130661.5 63 119371.0 64 103676.0 65 87981.0 66 74031.5 67 60082.0 68 49557.5 69 39033.0 70 32070.0 71 25107.0 72 20625.0 73 16143.0 74 12959.0 75 7435.0 76 5095.0 77 3922.5 78 2750.0 79 1902.5 80 1055.0 81 775.0 82 495.0 83 351.0 84 207.0 85 160.0 86 113.0 87 90.5 88 68.0 89 44.5 90 21.0 91 16.0 92 11.0 93 8.5 94 6.0 95 4.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3370548.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.26305243280962 #Duplication Level Percentage of deduplicated Percentage of total 1 82.49010604067104 15.065211318088007 2 6.351484610833418 2.3199499294766817 3 1.896496018435738 1.0390741866991966 4 0.9603244560307298 0.7015382357199437 5 0.6028018732540211 0.5504501108917023 6 0.44854005411526743 0.49150263159134355 7 0.34029648615757424 0.4350396798577655 8 0.2772049445029377 0.40500867488729847 9 0.22893436010916812 0.37629362001109107 >10 3.2211728592726745 14.981038584158144 >50 1.7324700368877777 23.0710755667908 >100 1.444907520194221 39.11062036289761 >500 0.003945554651592314 0.4799954963864667 >1k 0.0011507867733810918 0.3620007318403471 >5k 0.0 0.0 >10k+ 1.6439811048301313E-4 0.6112008707036531 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20357 0.6039670700432096 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4477 0.13282706550982215 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9668766028550848E-5 0.0 0.0 0.013944320033418897 0.0 2 2.9668766028550848E-5 0.0 0.0 0.047173337985395844 0.0 3 2.9668766028550848E-5 0.0 0.0 0.07265880800392102 0.0 4 2.9668766028550848E-5 0.0 0.0 0.10787563327981088 0.0 5 2.9668766028550848E-5 0.0 0.0 0.19450843008317936 0.0 6 2.9668766028550848E-5 0.0 0.0 0.3258817260576025 0.0 7 2.9668766028550848E-5 0.0 0.0 0.4199613831341372 0.0 8 2.9668766028550848E-5 0.0 0.0 0.6442869230760102 0.0 9 2.9668766028550848E-5 0.0 0.0 0.7721889734250929 0.0 10 2.9668766028550848E-5 0.0 0.0 0.9542068530102523 0.0 11 2.9668766028550848E-5 0.0 0.0 1.1128160761988852 0.0 12 2.9668766028550848E-5 0.0 0.0 1.236030461515457 0.0 13 2.9668766028550848E-5 0.0 0.0 1.2881584834276207 0.0 14 2.9668766028550848E-5 0.0 0.0 1.311596808590176 0.0 15 2.9668766028550848E-5 0.0 0.0 1.3442324512215817 0.0 16 2.9668766028550848E-5 0.0 0.0 1.4071302352021096 0.0 17 5.9337532057101696E-5 0.0 0.0 1.4759024348562904 0.0 18 5.9337532057101696E-5 0.0 0.0 1.580633178937075 0.0 19 5.9337532057101696E-5 0.0 0.0 1.636440127836779 0.0 20 5.9337532057101696E-5 0.0 0.0 1.6971127543651656 0.0 21 5.9337532057101696E-5 0.0 0.0 1.771729700926971 0.0 22 5.9337532057101696E-5 0.0 0.0 1.8573537596853686 0.0 23 5.9337532057101696E-5 0.0 0.0 1.9491192530116765 0.0 24 5.9337532057101696E-5 0.0 0.0 2.0230834867208536 0.0 25 5.9337532057101696E-5 0.0 0.0 2.0836077694190975 0.0 26 5.9337532057101696E-5 0.0 0.0 2.149976799024966 0.0 27 5.9337532057101696E-5 0.0 0.0 2.2142690150088353 0.0 28 5.9337532057101696E-5 0.0 0.0 2.2807567196788177 0.0 29 5.9337532057101696E-5 0.0 0.0 2.356975779606165 0.0 30 5.9337532057101696E-5 0.0 0.0 2.455416745288897 0.0 31 5.9337532057101696E-5 0.0 0.0 2.5412188166434655 0.0 32 5.9337532057101696E-5 0.0 0.0 2.624113348927237 0.0 33 5.9337532057101696E-5 0.0 0.0 2.7065628497205796 0.0 34 5.9337532057101696E-5 0.0 0.0 2.795450472742118 0.0 35 5.9337532057101696E-5 0.0 0.0 2.8956715643865625 0.0 36 5.9337532057101696E-5 0.0 0.0 2.9869030199243567 0.0 37 5.9337532057101696E-5 0.0 0.0 3.0862933861200017 0.0 38 5.9337532057101696E-5 0.0 0.0 3.20016211013758 0.0 39 5.9337532057101696E-5 0.0 0.0 3.3725969782955176 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGT 20 7.035228E-4 45.000004 13 CGTTTTT 12110 0.0 41.934353 1 TCTAGCG 125 0.0 39.600002 1 CGACTAA 80 0.0 39.375004 28 CGGTCTA 420 0.0 38.57143 31 CCCGCTA 35 6.2518848E-6 38.571426 29 AGGGCGA 2150 0.0 38.511623 6 GCGTAAG 155 0.0 37.741936 1 GGGCGAT 3825 0.0 37.705883 7 CGTACCA 30 1.14039E-4 37.500004 37 TAGGGAC 2470 0.0 37.34818 5 TCACGAC 440 0.0 37.329548 25 CGACCCG 545 0.0 37.155964 32 TAGACGG 480 0.0 37.031254 2 TATACGG 300 0.0 36.75 2 CTCACGA 480 0.0 36.562504 24 ATAGGGC 1125 0.0 36.2 4 ACGGGAT 785 0.0 36.114647 5 GTCGAAC 25 0.0021076852 36.0 30 TACGGGA 975 0.0 35.538464 4 >>END_MODULE