##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546804_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2335718 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.529879035054744 31.0 31.0 33.0 30.0 34.0 2 31.912224849061403 31.0 31.0 34.0 30.0 34.0 3 31.947726994440252 33.0 31.0 34.0 30.0 34.0 4 35.71718589316005 37.0 35.0 37.0 33.0 37.0 5 35.66088371969561 37.0 35.0 37.0 33.0 37.0 6 35.712806939878874 37.0 35.0 37.0 33.0 37.0 7 36.00865686696768 37.0 35.0 37.0 35.0 37.0 8 35.87555561073726 37.0 35.0 37.0 35.0 37.0 9 37.63929763781415 39.0 37.0 39.0 35.0 39.0 10 37.35790151037069 39.0 37.0 39.0 34.0 39.0 11 37.07075169177101 39.0 37.0 39.0 33.0 39.0 12 36.52340950405828 39.0 35.0 39.0 33.0 39.0 13 36.3255726932789 39.0 35.0 39.0 32.0 39.0 14 37.36841776276074 40.0 35.0 41.0 32.0 41.0 15 37.54676977272085 40.0 35.0 41.0 33.0 41.0 16 37.633295200876134 40.0 35.0 41.0 33.0 41.0 17 37.53997229117556 40.0 35.0 41.0 33.0 41.0 18 37.38663271850454 39.0 35.0 41.0 32.0 41.0 19 37.262169919485146 39.0 35.0 41.0 32.0 41.0 20 37.09735207760526 39.0 35.0 41.0 32.0 41.0 21 36.971902858136126 38.0 35.0 41.0 32.0 41.0 22 36.92284770678652 38.0 35.0 41.0 32.0 41.0 23 36.797781667136185 38.0 35.0 41.0 32.0 41.0 24 36.75236222865945 38.0 35.0 41.0 31.0 41.0 25 36.650199210692385 38.0 35.0 41.0 31.0 41.0 26 36.58782609886981 38.0 35.0 41.0 31.0 41.0 27 36.47470114114803 38.0 35.0 40.0 31.0 41.0 28 36.418295787419545 38.0 35.0 40.0 31.0 41.0 29 36.30873975368602 38.0 35.0 40.0 31.0 41.0 30 36.27601491275916 38.0 35.0 40.0 30.0 41.0 31 36.13308413087539 38.0 35.0 40.0 30.0 41.0 32 35.870251460150584 38.0 35.0 40.0 30.0 41.0 33 35.69387571616094 38.0 35.0 40.0 29.0 41.0 34 35.41380337866129 38.0 35.0 40.0 27.0 41.0 35 35.21638185774139 38.0 34.0 40.0 26.0 41.0 36 35.078857122306715 38.0 34.0 40.0 25.0 41.0 37 34.79534729791867 37.0 34.0 40.0 24.0 41.0 38 34.848405501006546 37.0 34.0 40.0 24.0 41.0 39 34.70497508688977 37.0 34.0 40.0 24.0 41.0 40 34.55732712596298 37.0 34.0 40.0 23.0 41.0 41 34.45501854247816 37.0 34.0 40.0 23.0 41.0 42 34.429407145896896 37.0 34.0 40.0 23.0 41.0 43 34.31586861085114 36.0 33.0 40.0 23.0 41.0 44 34.16706554472757 36.0 33.0 40.0 23.0 41.0 45 34.15040343055112 36.0 33.0 40.0 23.0 41.0 46 33.96961790764125 35.0 33.0 40.0 23.0 41.0 47 33.84887259506499 35.0 33.0 40.0 23.0 41.0 48 33.689177375008455 35.0 33.0 40.0 22.0 41.0 49 33.71934796923259 35.0 33.0 40.0 23.0 41.0 50 33.581569350409595 35.0 33.0 39.0 22.0 41.0 51 32.97688162697723 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 7.0 11 4.0 12 8.0 13 15.0 14 39.0 15 91.0 16 209.0 17 572.0 18 1205.0 19 2348.0 20 4220.0 21 6604.0 22 9867.0 23 14110.0 24 20194.0 25 29860.0 26 41435.0 27 48894.0 28 50395.0 29 52077.0 30 56949.0 31 66674.0 32 81315.0 33 106741.0 34 184175.0 35 277449.0 36 176265.0 37 228887.0 38 333248.0 39 541739.0 40 120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.774169655754676 21.662589405056604 28.50592408843876 18.057316850749963 2 33.26506025128033 24.068787413549067 29.217439776548364 13.44871255862223 3 27.418720924358166 25.03076141897267 33.92729773029107 13.6232199263781 4 25.44823476121689 26.25128547196194 33.15006349225377 15.150416274567391 5 23.2218529805396 30.657211187309425 31.870885098286696 14.250050733864276 6 21.68194105624052 38.36631819423407 29.062755007239744 10.88898574228567 7 82.84167866155076 4.593876486801917 10.214203940715445 2.350240910931885 8 84.07042288495444 3.5792420146610167 9.892975093739913 2.4573600066446377 9 79.4659286780339 5.206193555900156 11.573571809610577 3.7543059564553594 10 47.925177611338356 24.450340323617834 16.334163627629707 11.290318437414106 11 36.6344310400485 21.63561697088433 25.086290382657495 16.643661606409676 12 31.796817937781874 20.412995061903878 29.797860871903197 17.992326128411047 13 23.792255743201878 26.890789042170333 30.55651409973293 18.760441114894864 14 18.541921584711854 29.474833862649515 32.736914302154624 19.246330250484007 15 17.295709499177555 22.80917473770378 41.11566550414048 18.77945025897818 16 21.504907698617725 20.404903331652193 38.033486919225695 20.056702050504384 17 22.257310171861498 20.50457289792689 30.117163116437855 27.120953813773752 18 24.323998016883888 22.75972527505461 32.04650561411951 20.869771093941992 19 27.068421787219176 23.382317557170857 28.27177767179086 21.277482983819105 20 28.49042564213659 23.621430326777464 27.49073304225938 20.39741098882656 21 26.08760989126256 23.541283665236985 30.37960918227286 19.991497261227597 22 25.411757755002956 21.1658256690234 29.9784905540823 23.443926021891343 23 23.066697263967654 24.399221138853235 29.3801734627211 23.153908134458014 24 22.748037220246623 22.88422660612283 33.60859487318246 20.759141300448086 25 22.2041359444933 23.4292410299531 32.258645949553845 22.107977075999756 26 21.541727211932262 27.290066694695163 29.100302348143053 22.06790374522952 27 21.34213119905742 26.24165245975756 31.23159559501618 21.184620746168843 28 19.7571795910294 24.83835805521043 34.85994456522577 20.544517788534403 29 20.251203270257797 24.164218454453835 34.01707740403593 21.567500871252438 30 22.453052979854586 24.39545356074663 32.05712333423813 21.09437012516066 31 27.3285987435127 22.846850518769816 28.07260979279177 21.751940944925714 32 27.45310007458092 24.26744153189726 27.82883036393948 20.450628029582337 33 25.65468091610374 24.538493088634844 28.173435320530988 21.63339067473043 34 22.292502776448185 25.4530298606253 29.683934447566017 22.570532915360502 35 22.83965786965721 25.100547240719983 30.095028595061564 21.964766294561244 36 27.336519220214083 23.778255765464838 28.15382678902162 20.731398225299458 37 23.380176887792107 27.276580477609023 28.30174704309339 21.041495591505484 38 23.794524852743354 27.58261057199542 25.954717136229633 22.668147439031596 39 23.074446487118735 26.957321046461946 27.045131304378355 22.923101162040965 40 24.754443815563352 24.776920844040248 26.998293458371258 23.470341882025142 41 21.982319783467013 24.003496997497127 27.84942360336308 26.164759615672782 42 23.674561740758087 25.00002140669379 27.141033292546446 24.18438356000168 43 23.567571085208062 25.10744019611957 27.62478175875684 23.700206959915537 44 22.60568270655961 26.785510922123308 28.357019126452766 22.25178724486432 45 21.52819818145855 28.562223693099938 26.714654765686614 23.194923359754902 46 23.162171118259995 27.16034213034279 27.978463153514248 21.699023597882963 47 23.451033044228797 25.937634594587188 28.45446239657356 22.156869964610454 48 24.056885291803205 24.371777757417632 29.11190477617589 22.45943217460327 49 22.580251554340038 24.092163523165038 30.320355453869002 23.007229468625923 50 21.84677259840443 27.524812498769112 28.61330006447696 22.015114838349493 51 21.723641295738613 28.14012650499761 27.09689268995658 23.0393395093072 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1901.0 1 3149.0 2 4397.0 3 24764.0 4 45131.0 5 30826.0 6 16521.0 7 16511.5 8 16502.0 9 16803.0 10 17104.0 11 16820.0 12 16536.0 13 15955.0 14 15374.0 15 14456.0 16 13538.0 17 12531.0 18 11524.0 19 11193.5 20 10863.0 21 11349.5 22 11836.0 23 11728.0 24 11620.0 25 12162.0 26 14943.0 27 17182.0 28 19686.0 29 22190.0 30 24803.0 31 27416.0 32 34000.5 33 40585.0 34 43384.5 35 46184.0 36 51668.5 37 57153.0 38 65644.5 39 74136.0 40 91796.0 41 109456.0 42 126530.5 43 143605.0 44 146063.0 45 148521.0 46 153236.0 47 157951.0 48 160057.5 49 162164.0 50 159523.0 51 156882.0 52 148488.5 53 140095.0 54 137108.0 55 134121.0 56 132596.5 57 131072.0 58 129146.5 59 127221.0 60 120303.0 61 113385.0 62 105285.5 63 97186.0 64 86155.0 65 75124.0 66 63578.5 67 52033.0 68 44698.0 69 37363.0 70 31262.0 71 25161.0 72 20235.5 73 15310.0 74 12556.0 75 7254.0 76 4706.0 77 3559.0 78 2412.0 79 1712.0 80 1012.0 81 710.5 82 409.0 83 291.0 84 173.0 85 125.0 86 77.0 87 60.5 88 44.0 89 30.0 90 16.0 91 13.5 92 11.0 93 7.5 94 4.0 95 3.5 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2335718.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.964803318201305 #Duplication Level Percentage of deduplicated Percentage of total 1 81.16545476264069 17.827832500937678 2 5.556575772040815 2.440981879111181 3 1.921691960636954 1.26628757860678 4 1.1125862970395552 0.9775095675599891 5 0.736995283220476 0.809397822118991 6 0.5436495542653577 0.7164693320079831 7 0.4178806628715016 0.6425066599316482 8 0.3704899183868805 0.6510190550995426 9 0.3107616096681582 0.6143235871687865 >10 5.478208486950874 31.484663940096198 >50 2.0387656268178653 30.84734694508766 >100 0.34142057625274563 9.58135272135254 >500 0.004533866135243277 0.6710762271578196 >1k 7.884984583031785E-4 0.2542027569290637 >5k 0.0 0.0 >10k+ 1.9712461457579463E-4 1.2150294268341655 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28062 1.2014292821308052 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019822598447244058 0.0 2 0.0 0.0 0.0 0.06225066553410986 0.0 3 0.0 0.0 0.0 0.10133928839012243 0.0 4 0.0 0.0 0.0 0.16761441235628616 0.0 5 0.0 0.0 0.0 0.322427621827635 0.0 6 0.0 0.0 0.0 0.5619685253099903 0.0 7 0.0 0.0 0.0 0.7591669884806299 0.0 8 0.0 0.0 0.0 1.1217535678536537 0.0 9 0.0 0.0 0.0 1.321906154766971 0.0 10 4.2813387575041164E-5 0.0 0.0 1.5730922996697376 0.0 11 4.2813387575041164E-5 0.0 0.0 1.763911568091696 0.0 12 4.2813387575041164E-5 0.0 0.0 1.931525980447982 0.0 13 4.2813387575041164E-5 0.0 0.0 2.0101313600357575 0.0 14 4.2813387575041164E-5 0.0 0.0 2.052131293246873 0.0 15 4.2813387575041164E-5 0.0 0.0 2.091134289327736 0.0 16 4.2813387575041164E-5 0.0 0.0 2.1535990217997205 0.0 17 4.2813387575041164E-5 0.0 0.0 2.224840498724589 0.0 18 4.2813387575041164E-5 0.0 0.0 2.323268476759609 0.0 19 4.2813387575041164E-5 0.0 0.0 2.382736272101341 0.0 20 4.2813387575041164E-5 0.0 0.0 2.450252984307181 0.0 21 4.2813387575041164E-5 0.0 0.0 2.530356832460083 0.0 22 4.2813387575041164E-5 0.0 0.0 2.618894917965268 0.0 23 4.2813387575041164E-5 0.0 0.0 2.7138550116067095 0.0 24 4.2813387575041164E-5 0.0 0.0 2.7903197218157327 0.0 25 4.2813387575041164E-5 0.0 0.0 2.8596345962997245 0.0 26 4.2813387575041164E-5 0.0 0.0 2.923426543786536 0.0 27 4.2813387575041164E-5 0.0 0.0 2.9893163472645243 0.0 28 4.2813387575041164E-5 0.0 0.0 3.060771891127268 0.0 29 4.2813387575041164E-5 0.0 0.0 3.1425454613955965 0.0 30 4.2813387575041164E-5 0.0 0.0 3.2450407112502453 0.0 31 4.2813387575041164E-5 0.0 0.0 3.3334931699802803 0.0 32 4.2813387575041164E-5 0.0 0.0 3.414324845721958 0.0 33 4.2813387575041164E-5 0.0 0.0 3.498495965694489 0.0 34 4.2813387575041164E-5 0.0 0.0 3.5846793148830467 0.0 35 4.2813387575041164E-5 0.0 0.0 3.6834069866310917 0.0 36 4.2813387575041164E-5 0.0 0.0 3.7714313114853764 0.0 37 4.2813387575041164E-5 0.0 0.0 3.862837893958089 0.0 38 4.2813387575041164E-5 0.0 0.0 3.974794902466822 0.0 39 4.2813387575041164E-5 0.0 0.0 4.158250268225873 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGAT 25 3.8920472E-5 45.0 37 CGTTTTT 15055 0.0 43.341084 1 ATTCGCG 140 0.0 40.17857 1 TACGGGC 305 0.0 37.62295 4 TTACGAG 90 0.0 37.5 1 ACGTTAC 30 1.1402829E-4 37.499996 45 TCGATAG 60 1.5643309E-10 37.499996 1 ACGAACT 30 1.1402829E-4 37.499996 41 GACCGAT 715 0.0 37.44755 9 GTTTTTT 18490 0.0 37.418873 2 TACGTTG 110 0.0 36.81818 1 GTAGGGA 2445 0.0 36.717793 4 CGGTCTA 215 0.0 36.627903 31 TTACGGG 725 0.0 36.62069 3 CGTTAGG 320 0.0 36.562504 2 AGGGCGA 1380 0.0 36.032608 6 TACGGGA 600 0.0 36.000004 4 ACGGGTA 150 0.0 36.000004 5 CGACGTA 50 4.8827133E-8 36.0 30 CGGGATA 270 0.0 35.833332 6 >>END_MODULE