SRR1546803_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546803_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2317371
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35399	1.5275499693402568	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	12837	0.5539466921783348	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	12810	0.552781578780437	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	6223	0.2685370620414254	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4055	0.17498277142503293	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	3770	0.1626843522249998	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT	2422	0.10451498702624656	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTCGA	20	7.034771E-4	45.000004	39
CGTTTTT	20570	0.0	44.146816	1
CGATGAA	9570	0.0	43.80094	19
CGATCGA	795	0.0	43.301884	41
GATGAAT	10130	0.0	43.28973	20
CCGATGA	9165	0.0	43.207855	18
GCGATCG	745	0.0	43.18792	33
TGAATGA	10140	0.0	43.047337	22
CCGATCG	1520	0.0	42.92763	40
CGCCGAT	1500	0.0	42.749996	38
TCGCCGA	890	0.0	42.724716	37
ATGAATG	10255	0.0	42.652363	21
CGATCGC	740	0.0	42.567566	34
CCACCGA	10335	0.0	42.561684	15
ATACGGT	680	0.0	42.352943	28
ACCACCG	10525	0.0	42.2209	14
ACCGATG	9405	0.0	41.913876	17
GCCGATC	1515	0.0	41.73267	39
CACCGAT	9850	0.0	41.413704	16
CGATCGT	720	0.0	41.25	41