##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546803_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2317371 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.425034662123586 31.0 31.0 33.0 30.0 34.0 2 31.767401076478475 31.0 31.0 34.0 30.0 34.0 3 31.72819285302181 31.0 31.0 34.0 30.0 34.0 4 35.56070132922178 37.0 35.0 37.0 33.0 37.0 5 35.44206042105472 37.0 35.0 37.0 33.0 37.0 6 35.54950286337406 37.0 35.0 37.0 33.0 37.0 7 35.8268904720047 37.0 35.0 37.0 35.0 37.0 8 35.65524812384378 37.0 35.0 37.0 35.0 37.0 9 37.331519208620456 39.0 37.0 39.0 34.0 39.0 10 37.10646633620598 39.0 37.0 39.0 33.0 39.0 11 36.8678890863828 39.0 37.0 39.0 33.0 39.0 12 36.2203829253063 38.0 35.0 39.0 32.0 39.0 13 35.97653634226026 38.0 35.0 39.0 31.0 39.0 14 37.05223246515124 39.0 35.0 41.0 31.0 41.0 15 37.19128702309643 39.0 35.0 41.0 32.0 41.0 16 37.32462518949275 39.0 35.0 41.0 32.0 41.0 17 37.01944531108744 39.0 35.0 41.0 32.0 41.0 18 36.91207622775982 38.0 35.0 40.0 32.0 41.0 19 36.82225720439239 38.0 35.0 40.0 32.0 41.0 20 36.21536301265529 38.0 35.0 40.0 30.0 41.0 21 36.3447298684587 37.0 35.0 40.0 31.0 41.0 22 36.1791361849268 37.0 35.0 40.0 30.0 41.0 23 35.88135736573902 37.0 35.0 40.0 30.0 41.0 24 36.09364145835949 37.0 35.0 40.0 30.0 41.0 25 36.19876834568138 37.0 35.0 40.0 31.0 41.0 26 35.955572500044234 37.0 35.0 40.0 30.0 41.0 27 35.681455407873834 37.0 35.0 40.0 30.0 41.0 28 35.65796111196697 37.0 35.0 40.0 30.0 41.0 29 35.5060881490275 36.0 35.0 40.0 29.0 41.0 30 35.4981584735461 37.0 35.0 40.0 29.0 41.0 31 35.3846574415577 37.0 34.0 40.0 29.0 41.0 32 34.77348167384506 36.0 34.0 40.0 24.0 41.0 33 34.37027088023454 36.0 34.0 40.0 22.0 41.0 34 33.76731434025886 36.0 33.0 40.0 18.0 41.0 35 33.47145191684888 36.0 33.0 40.0 15.0 41.0 36 33.374135173004234 36.0 33.0 40.0 15.0 41.0 37 33.00697946077689 36.0 33.0 40.0 12.0 41.0 38 33.15501704301987 36.0 33.0 40.0 15.0 41.0 39 32.93422589650082 36.0 33.0 40.0 12.0 41.0 40 32.808211978142474 36.0 32.0 40.0 12.0 41.0 41 32.81021769928078 35.0 32.0 40.0 13.0 41.0 42 32.77663352134812 35.0 32.0 40.0 12.0 41.0 43 32.63199634413307 35.0 32.0 40.0 11.0 41.0 44 32.62622083386734 35.0 32.0 40.0 12.0 41.0 45 32.76400628125579 35.0 32.0 40.0 15.0 41.0 46 32.503984472059074 35.0 31.0 40.0 13.0 41.0 47 32.25007303534911 35.0 31.0 40.0 11.0 41.0 48 32.33130085773922 35.0 31.0 40.0 14.0 41.0 49 32.39659165494002 35.0 31.0 39.0 15.0 41.0 50 32.15049812912995 35.0 31.0 39.0 11.0 41.0 51 31.700448913876976 35.0 30.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 5.0 11 4.0 12 8.0 13 14.0 14 27.0 15 84.0 16 258.0 17 687.0 18 1969.0 19 4069.0 20 7909.0 21 15695.0 22 26206.0 23 35791.0 24 42811.0 25 51669.0 26 61969.0 27 62776.0 28 57742.0 29 54550.0 30 57815.0 31 67119.0 32 81271.0 33 105397.0 34 181745.0 35 300207.0 36 153761.0 37 185715.0 38 273588.0 39 486388.0 40 119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.76052345524303 20.382580087521593 25.47071660083776 18.386179856397618 2 33.812799072742344 29.004074013181313 26.13327775310902 11.049849160967321 3 25.561768055266075 28.80371766109095 33.78945365243632 11.845060631206657 4 22.649416084002088 24.190300128896062 40.28539236919768 12.87489141790417 5 26.4989075983086 27.820966086138128 32.5825687816064 13.097557533946874 6 19.239819605924126 40.42278944545349 30.89967035921309 9.437720589409292 7 75.50603679773329 4.029307348715419 18.624251360701415 1.8404044928498717 8 75.82303394665766 9.170607554854186 12.780172013889878 2.2261864845982795 9 71.99952014588946 5.022372334857042 13.714808720744326 9.263298798509172 10 48.364590736658045 20.57150106737333 20.431212783796813 10.63269541217181 11 42.00652377198127 19.89664149590204 24.758659705329876 13.33817502678682 12 32.00005523500553 19.42675557776463 29.283528619284528 19.28966056794531 13 25.36861814530345 30.467887964421752 29.872299256355582 14.291194633919213 14 15.975085560318137 37.37010603826491 31.383019809948426 15.271788591468521 15 14.48145333656113 22.08778827386724 44.84150358315522 18.58925480641641 16 16.823676485120423 19.828503938299047 41.17933641182184 22.168483164758683 17 17.610947923314825 24.30495591771883 31.70299447088964 26.381101688076704 18 20.21514897700886 22.878468747559193 34.08133613478377 22.825046140648176 19 24.28752236909843 24.675203064161934 28.423718083983964 22.613556482755676 20 30.917190212529626 23.091209823545732 29.16952011568281 16.82207984824182 21 21.31846821247008 29.891243137158447 30.87843940396251 17.91184924640897 22 21.408311401152428 22.2503863213961 34.390997384536185 21.95030489291529 23 23.612058664754155 26.675832225396796 30.312884730153268 19.399224379695784 24 19.79078878608561 27.320614610263092 35.094769029214575 17.793827574436722 25 17.336671598980054 30.13993011908753 33.77896763185523 18.744430650077177 26 17.057432754617192 29.00019030185499 34.900324548809834 19.042052394717977 27 22.83056964120117 27.744456973009502 31.75879045694453 17.666182928844798 28 15.616705309594364 30.23818801564359 37.14985645371414 16.995250221047904 29 17.896012334667173 23.69094115702665 40.21863568673294 18.19441082157324 30 18.251587682766377 29.809814656349804 34.228658251095744 17.709939409788074 31 24.994271525793668 23.355906326608903 28.30138117720469 23.34844097039274 32 30.537449549511063 25.353169604694287 28.223145970153247 15.886234875641406 33 27.833264505338164 25.114839186302063 28.39761091340144 18.65428539495834 34 20.658237286994616 25.82176095238958 30.90260471888187 22.61739704173393 35 23.47047581073553 25.635299656377853 30.82393798834973 20.07028654453689 36 25.41336713025234 28.278122061594797 27.565763099650425 18.742747708502435 37 21.25102109243621 29.243742154363716 30.74130124179512 18.76393551140495 38 20.709976952330898 29.996189647665396 25.798286075039346 23.495547324964367 39 21.84117260464552 29.580201012267782 28.17770654763523 20.400919835451468 40 22.174179274703963 25.993981973538116 27.573487369955007 24.258351381802914 41 18.004108966583253 26.290050233648387 27.968806030626947 27.73703476914141 42 22.677206196159354 27.011945864516303 26.75747646794579 23.553371471378558 43 22.349162046129 28.05183114831419 25.96601925198857 23.632987553568245 44 20.628893690306818 29.076138434458702 28.85688135391355 21.43808652132093 45 19.48738462680339 31.29718978963662 25.459626447383695 23.755799136176297 46 23.79118406159394 31.078579994312523 26.228212918863658 18.902023025229884 47 20.70311572898772 28.437009007189612 29.83549030345163 21.02438496037104 48 22.548741655954096 25.543600916728483 29.603158061441174 22.304499365876246 49 21.46812055557785 24.34340465984946 31.63162048718138 22.55685429739131 50 19.639108282618537 29.86189954047064 28.576520548500866 21.922471628409955 51 19.211036989761244 30.130393450164 27.59976714992981 23.058802410144942 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1589.0 1 2916.5 2 4244.0 3 29812.5 4 55381.0 5 37997.5 6 20614.0 7 20792.0 8 20970.0 9 22428.0 10 23886.0 11 24258.5 12 24631.0 13 24244.0 14 23857.0 15 22625.0 16 21393.0 17 19963.5 18 18534.0 19 17571.5 20 16609.0 21 16255.0 22 15901.0 23 15078.0 24 14255.0 25 15208.0 26 18660.5 27 21160.0 28 23507.0 29 25854.0 30 27370.5 31 28887.0 32 34962.5 33 41038.0 34 46630.0 35 52222.0 36 53318.0 37 54414.0 38 66679.5 39 78945.0 40 102725.0 41 126505.0 42 145744.0 43 164983.0 44 171633.0 45 178283.0 46 198432.5 47 218582.0 48 190195.5 49 161809.0 50 159535.5 51 157262.0 52 149226.5 53 141191.0 54 135994.5 55 130798.0 56 126066.0 57 121334.0 58 108599.0 59 95864.0 60 85714.5 61 75565.0 62 66106.0 63 56647.0 64 48508.0 65 40369.0 66 32513.5 67 24658.0 68 20403.5 69 16149.0 70 13480.0 71 10811.0 72 8988.0 73 7165.0 74 5675.5 75 3312.5 76 2439.0 77 1746.0 78 1053.0 79 829.0 80 605.0 81 483.0 82 361.0 83 237.0 84 113.0 85 74.0 86 35.0 87 29.5 88 24.0 89 22.5 90 21.0 91 15.0 92 9.0 93 6.5 94 4.0 95 2.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2317371.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.257554966063637 #Duplication Level Percentage of deduplicated Percentage of total 1 82.18426894880567 19.935894213714104 2 6.299315065825173 3.0561196291561377 3 2.33716446899056 1.7008168671380834 4 1.300326391675205 1.2617095567953789 5 0.8281559462741083 1.0044519193608312 6 0.6130007370733339 0.8921939444276352 7 0.43603270785976384 0.7403961164536853 8 0.35621142558099744 0.6912654588456745 9 0.2899589873373092 0.6330326465915034 >10 3.394510236102514 19.367822372262044 >50 1.2442413352410888 21.61321740310294 >100 0.7088350559189814 24.409647774565965 >500 0.005077350291548795 0.7487937637976398 >1k 0.0021760072678066265 0.9856647276730021 >5k 1.8133393898388554E-4 0.27373222064928115 >10k+ 5.440018169516566E-4 2.6852413854661763 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35399 1.5275499693402568 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG 12837 0.5539466921783348 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC 12810 0.552781578780437 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC 6223 0.2685370620414254 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4055 0.17498277142503293 No Hit GAACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT 3770 0.1626843522249998 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT 2422 0.10451498702624656 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.315234807029172E-5 0.0 0.0 0.026366084670948243 0.0 2 4.315234807029172E-5 0.0 0.0 0.1346353259793102 0.0 3 4.315234807029172E-5 0.0 0.0 0.19880286755983398 0.0 4 4.315234807029172E-5 0.0 0.0 0.4302720626088788 0.0 5 4.315234807029172E-5 0.0 0.0 1.1741753909926378 0.0 6 4.315234807029172E-5 0.0 0.0 1.434686116292989 0.0 7 4.315234807029172E-5 0.0 0.0 1.6926508530571929 0.0 8 4.315234807029172E-5 0.0 0.0 2.037955942315667 0.0 9 4.315234807029172E-5 0.0 0.0 2.191448844401695 0.0 10 4.315234807029172E-5 0.0 0.0 2.9710823169876552 0.0 11 4.315234807029172E-5 0.0 0.0 3.169842032199419 0.0 12 4.315234807029172E-5 0.0 0.0 3.636620981275765 0.0 13 4.315234807029172E-5 0.0 0.0 3.739798245511832 0.0 14 4.315234807029172E-5 0.0 0.0 3.79123584441162 0.0 15 4.315234807029172E-5 4.315234807029172E-5 0.0 3.890529397321361 0.0 16 4.315234807029172E-5 4.315234807029172E-5 0.0 3.984860430203019 0.0 17 4.315234807029172E-5 4.315234807029172E-5 0.0 4.07677493159274 0.0 18 4.315234807029172E-5 4.315234807029172E-5 0.0 4.198248791410611 0.0 19 4.315234807029172E-5 4.315234807029172E-5 0.0 4.331373785207461 0.0 20 4.315234807029172E-5 4.315234807029172E-5 0.0 4.413233789496805 0.0 21 4.315234807029172E-5 4.315234807029172E-5 0.0 4.505450357323018 0.0 22 4.315234807029172E-5 4.315234807029172E-5 0.0 4.631670975428621 0.0 23 4.315234807029172E-5 4.315234807029172E-5 0.0 4.747535029997355 0.0 24 4.315234807029172E-5 4.315234807029172E-5 0.0 4.83996735956392 0.0 25 4.315234807029172E-5 4.315234807029172E-5 0.0 4.917727890786585 0.0 26 4.315234807029172E-5 4.315234807029172E-5 0.0 4.998983762202944 0.0 27 4.315234807029172E-5 4.315234807029172E-5 0.0 5.114157379202553 0.0 28 4.315234807029172E-5 4.315234807029172E-5 0.0 5.195413250618913 0.0 29 4.315234807029172E-5 4.315234807029172E-5 0.0 5.286464705047228 0.0 30 4.315234807029172E-5 4.315234807029172E-5 0.0 5.409448897047559 0.0 31 4.315234807029172E-5 4.315234807029172E-5 0.0 5.503693625233077 0.0 32 4.315234807029172E-5 4.315234807029172E-5 0.0 5.605748928419317 0.0 33 4.315234807029172E-5 4.315234807029172E-5 0.0 5.700036808952904 0.0 34 4.315234807029172E-5 4.315234807029172E-5 0.0 5.802782549708269 0.0 35 4.315234807029172E-5 4.315234807029172E-5 0.0 5.913166256072075 0.0 36 4.315234807029172E-5 4.315234807029172E-5 0.0 6.016818196136915 0.0 37 4.315234807029172E-5 4.315234807029172E-5 0.0 6.123577105262817 0.0 38 4.315234807029172E-5 4.315234807029172E-5 0.0 6.242073453063838 0.0 39 4.315234807029172E-5 4.315234807029172E-5 0.0 6.3859865338782615 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTCGA 20 7.034771E-4 45.000004 39 CGTTTTT 20570 0.0 44.146816 1 CGATGAA 9570 0.0 43.80094 19 CGATCGA 795 0.0 43.301884 41 GATGAAT 10130 0.0 43.28973 20 CCGATGA 9165 0.0 43.207855 18 GCGATCG 745 0.0 43.18792 33 TGAATGA 10140 0.0 43.047337 22 CCGATCG 1520 0.0 42.92763 40 CGCCGAT 1500 0.0 42.749996 38 TCGCCGA 890 0.0 42.724716 37 ATGAATG 10255 0.0 42.652363 21 CGATCGC 740 0.0 42.567566 34 CCACCGA 10335 0.0 42.561684 15 ATACGGT 680 0.0 42.352943 28 ACCACCG 10525 0.0 42.2209 14 ACCGATG 9405 0.0 41.913876 17 GCCGATC 1515 0.0 41.73267 39 CACCGAT 9850 0.0 41.413704 16 CGATCGT 720 0.0 41.25 41 >>END_MODULE