SRR1546801_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546801_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	654512
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2087	0.3188635196910064	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1826	0.27898648153127825	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	20	7.031057E-4	45.000004	2
ACGCGAG	20	7.031057E-4	45.000004	1
CCTTCAT	30	2.1640626E-6	45.000004	38
GTTTGCG	40	6.8066583E-9	45.000004	1
CTAGAGT	20	7.031057E-4	45.000004	14
CTATGCG	45	3.8380676E-10	45.000004	1
TCGTTGA	40	6.8066583E-9	45.000004	24
GCAAGTA	20	7.031057E-4	45.000004	32
AGATCCC	20	7.031057E-4	45.000004	32
CCCTCAT	20	7.031057E-4	45.000004	25
AGTTTCG	20	7.031057E-4	45.000004	1
CCTAGAC	20	7.031057E-4	45.000004	14
GCGAAAA	20	7.031057E-4	45.000004	24
TTTGTCG	20	7.031057E-4	45.000004	1
GTTTACG	20	7.031057E-4	45.000004	1
TTAGACG	30	2.1640626E-6	45.000004	1
CGTTGAT	40	6.8066583E-9	45.000004	25
TCCCTTA	20	7.031057E-4	45.000004	35
GTGATTG	60	0.0	45.000004	1
TAAGTTG	40	6.8066583E-9	45.000004	1