##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546798_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2171392 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.648204930293563 31.0 31.0 33.0 30.0 34.0 2 32.02219728174369 33.0 31.0 34.0 30.0 34.0 3 32.07161166661754 33.0 31.0 34.0 30.0 34.0 4 35.80251746345201 37.0 35.0 37.0 35.0 37.0 5 35.75661419034426 37.0 35.0 37.0 35.0 37.0 6 35.81108017345555 37.0 35.0 37.0 35.0 37.0 7 36.0856745350448 37.0 35.0 37.0 35.0 37.0 8 35.94987224784838 37.0 35.0 37.0 35.0 37.0 9 37.69379319809597 39.0 38.0 39.0 35.0 39.0 10 37.44940664790144 39.0 37.0 39.0 35.0 39.0 11 37.20475575114949 39.0 37.0 39.0 34.0 39.0 12 36.64383261981254 39.0 35.0 39.0 33.0 39.0 13 36.43944621698892 39.0 35.0 39.0 33.0 39.0 14 37.506986301874555 40.0 35.0 41.0 33.0 41.0 15 37.665587328312895 40.0 35.0 41.0 33.0 41.0 16 37.74590585209856 40.0 35.0 41.0 33.0 41.0 17 37.64444559066258 40.0 35.0 41.0 33.0 41.0 18 37.50994200954963 39.0 35.0 41.0 33.0 41.0 19 37.44449459148785 39.0 35.0 41.0 33.0 41.0 20 37.328349280093136 39.0 35.0 41.0 33.0 41.0 21 37.20098627976892 39.0 35.0 41.0 32.0 41.0 22 37.14032196858052 39.0 35.0 41.0 32.0 41.0 23 37.02989418769158 39.0 35.0 41.0 32.0 41.0 24 37.00284103469111 39.0 35.0 41.0 32.0 41.0 25 36.90099806944117 38.0 35.0 41.0 32.0 41.0 26 36.84701242336713 38.0 35.0 41.0 32.0 41.0 27 36.75416000427376 38.0 35.0 41.0 32.0 41.0 28 36.712142257132754 38.0 35.0 41.0 32.0 41.0 29 36.63085338805706 38.0 35.0 40.0 31.0 41.0 30 36.61608636303348 38.0 35.0 41.0 31.0 41.0 31 36.492791260168595 38.0 35.0 41.0 31.0 41.0 32 36.273509343315254 38.0 35.0 41.0 30.0 41.0 33 36.14754636657038 38.0 35.0 41.0 30.0 41.0 34 35.913136365980904 38.0 35.0 41.0 30.0 41.0 35 35.76518104515444 38.0 35.0 41.0 29.0 41.0 36 35.64707155594199 38.0 35.0 41.0 28.0 41.0 37 35.393078725536434 38.0 35.0 40.0 27.0 41.0 38 35.453154474180614 38.0 35.0 40.0 27.0 41.0 39 35.35452465515208 38.0 35.0 40.0 27.0 41.0 40 35.20626307916765 38.0 34.0 40.0 26.0 41.0 41 35.15330810834709 38.0 34.0 40.0 26.0 41.0 42 35.143359651320445 38.0 34.0 40.0 26.0 41.0 43 35.06000805013558 37.0 34.0 40.0 26.0 41.0 44 34.90916379907451 37.0 34.0 40.0 26.0 41.0 45 34.88790646737208 37.0 34.0 40.0 26.0 41.0 46 34.71294634962273 37.0 34.0 40.0 24.0 41.0 47 34.58303153000472 37.0 34.0 40.0 24.0 41.0 48 34.4390496971528 36.0 34.0 40.0 23.0 41.0 49 34.46552165615421 36.0 34.0 40.0 24.0 41.0 50 34.34528542059656 36.0 34.0 40.0 24.0 41.0 51 33.7584475764855 35.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 9.0 11 7.0 12 11.0 13 16.0 14 40.0 15 67.0 16 185.0 17 412.0 18 789.0 19 1715.0 20 3088.0 21 4827.0 22 7430.0 23 11087.0 24 15879.0 25 23679.0 26 32135.0 27 37337.0 28 39200.0 29 41073.0 30 46793.0 31 56229.0 32 69573.0 33 92753.0 34 166928.0 35 268958.0 36 149768.0 37 199609.0 38 314456.0 39 587185.0 40 154.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.00160265857109 22.730856519688754 27.517417398608817 14.750123423131337 2 33.864037446946476 24.508379877976893 28.766017375029474 12.86156530004716 3 29.980353616481963 24.45251709502476 32.00255872730488 13.564570561188399 4 26.782543179674605 26.571710681443054 31.07614838776232 15.569597751120018 5 23.398815137939167 30.451618132515918 30.706385581230844 15.443181148314078 6 22.28192790615421 39.13480384932799 28.221435834708796 10.361832409809008 7 83.6464811512615 4.954333441405328 8.857267596085828 2.5419178112473473 8 83.99598045861825 4.498450763381278 8.897241953548692 2.60832682445178 9 79.07899633046452 6.515636052817732 10.346726892242396 4.05864072447536 10 45.30476302758784 26.16386170714454 16.300511377033718 12.230863888233907 11 37.82200542324923 24.358337877269513 23.241680912520632 14.577975786960623 12 34.075376532657394 22.85644416116482 26.962335681443054 16.105843624734735 13 24.018463732020752 31.218729736500826 27.717151025701487 17.04565550577694 14 18.329117911459562 33.63552044034426 30.017841089955198 18.01752055824098 15 17.420346026880456 25.244359378684273 40.55020926668239 16.78508532775289 16 20.964478085946713 22.357271280358407 38.21553178790379 18.462718845791088 17 21.685213908865833 21.970422659750056 29.400449112827165 26.943914318556946 18 23.723307445178023 24.22607249174723 31.54764317083235 20.502976892242394 19 27.908779253124262 25.406835799339778 27.175424796628157 19.508960150907807 20 29.933931782008962 24.442293238622966 26.69702200247583 18.926752976892242 21 26.036339822565434 25.570371448361236 29.282276069912754 19.111012659160576 22 24.87892559243103 23.652661518509785 28.816952443409573 22.65146044564961 23 22.551202178141946 27.05996890473945 28.35448412815374 22.034344788964866 24 22.47995755717991 24.40899662520632 33.479077016033955 19.631968801579816 25 21.334977746993633 25.76011148608819 32.22674671362886 20.67816405328932 26 20.38821180146192 30.810189961094082 28.071670154444707 20.729928082999294 27 20.11198346498467 29.57844553171422 30.43370335710917 19.875867646191935 28 19.28785774286725 27.374882103277532 34.44979073331761 18.88746942053761 29 20.216478645956144 25.97743751473709 33.982164436453665 19.8239194028531 30 21.299654783659513 26.778812853690166 31.844641593963686 20.07689076868663 31 25.88933734673426 26.01796451308654 27.35936210504598 20.733336035133224 32 26.89233450247583 26.826754450601275 27.715861530299456 18.56504951662344 33 26.168605208087715 26.6930153560481 27.502035560598912 19.636343875265265 34 21.874769732963923 27.560247067319025 29.559103100683803 21.00588009903325 35 22.22454536076397 27.616846704786607 29.089358347087952 21.069249587361472 36 26.140788950129686 26.816484540792267 27.57724077458147 19.465485734496582 37 23.3859662373261 29.024561203136052 27.97505010610705 19.614422453430794 38 22.419259166470173 30.369689121079936 25.65598473237444 21.555066980075456 39 22.42805536724829 28.884190417943884 27.188596071091727 21.499158143716105 40 23.55751517920302 26.73170021810894 27.406014206555056 22.304770396132987 41 20.519556118839898 26.41885942289554 28.088617808299933 24.972966649964633 42 22.868371993633577 27.121726523815138 26.668376783187924 23.341524699363358 43 23.25508245402028 27.60510308594671 26.09878824274935 23.041026217283658 44 22.00993648314077 29.591386539141713 27.272873806295685 21.125803171421833 45 20.54654341546805 31.554965662579583 25.655247877858994 22.243243044093376 46 22.610150539377504 29.678795906036314 27.32413124852629 20.38692230605989 47 23.03780247877859 27.92061497877859 27.872903648903563 21.16867889353926 48 23.414933830464513 26.1791053849328 28.436965780476303 21.968995004126384 49 22.367541190167415 26.004609024994107 29.57757051697713 22.050279267861352 50 20.74254671657628 29.86890437102099 27.449258355930205 21.93929055647253 51 20.864173765031833 30.645180603041734 25.97462825689696 22.516017375029474 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1337.0 1 2573.0 2 3809.0 3 14886.0 4 25963.0 5 18663.5 6 11364.0 7 11614.0 8 11864.0 9 12369.0 10 12874.0 11 12629.5 12 12385.0 13 12191.5 14 11998.0 15 11532.0 16 11066.0 17 10297.5 18 9529.0 19 9620.0 20 9711.0 21 10259.0 22 10807.0 23 12351.5 24 13896.0 25 14956.5 26 18035.0 27 20053.0 28 23240.0 29 26427.0 30 30944.5 31 35462.0 32 41768.5 33 48075.0 34 53812.0 35 59549.0 36 65462.5 37 71376.0 38 81419.5 39 91463.0 40 108077.0 41 124691.0 42 142585.5 43 160480.0 44 164364.5 45 168249.0 46 166204.5 47 164160.0 48 156992.5 49 149825.0 50 148762.5 51 147700.0 52 139704.5 53 131709.0 54 125915.5 55 120122.0 56 111856.0 57 103590.0 58 100449.0 59 97308.0 60 88429.0 61 79550.0 62 72761.5 63 65973.0 64 57386.5 65 48800.0 66 42000.0 67 35200.0 68 28497.0 69 21794.0 70 18250.0 71 14706.0 72 12361.0 73 10016.0 74 7931.0 75 4523.5 76 3201.0 77 2625.5 78 2050.0 79 1409.0 80 768.0 81 552.0 82 336.0 83 250.0 84 164.0 85 121.5 86 79.0 87 47.5 88 16.0 89 16.5 90 17.0 91 12.0 92 7.0 93 5.5 94 4.0 95 5.0 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2171392.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.892988451212954 #Duplication Level Percentage of deduplicated Percentage of total 1 82.05979389166939 16.324145321958945 2 5.453068226391389 2.1695564650256043 3 1.7190882500911233 1.025934081170358 4 0.9610170203900656 0.7647000195215464 5 0.634455770880067 0.6310610661461292 6 0.4577522335936797 0.5463635937837602 7 0.3751180502869792 0.5223553329540278 8 0.3216575509498578 0.5118983957032771 9 0.28216239794517206 0.5051747991320876 >10 4.635653935586377 24.195474701733954 >50 2.4003284268352973 34.05940753642431 >100 0.6980452700154592 17.734451427502442 >500 0.001161859603277235 0.15286845385688327 >1k 4.6474384131089394E-4 0.19826211024861576 >5k 0.0 0.0 >10k+ 2.3237192065544697E-4 0.6583466948381408 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14242 0.6558926255600095 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2562 0.11798882928554587 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3816022164583826E-4 0.0 0.0 0.008888307592548926 0.0 2 1.3816022164583826E-4 0.0 0.0 0.03348082704550814 0.0 3 1.3816022164583826E-4 0.0 0.0 0.052823258075925486 0.0 4 1.3816022164583826E-4 0.0 0.0 0.07870527293091252 0.0 5 1.3816022164583826E-4 0.0 0.0 0.13834443527469936 0.0 6 1.3816022164583826E-4 0.0 0.0 0.22377350565904267 0.0 7 1.3816022164583826E-4 0.0 0.0 0.280695516977128 0.0 8 1.3816022164583826E-4 0.0 0.0 0.4016317643244518 0.0 9 1.3816022164583826E-4 0.0 0.0 0.4665210150907805 0.0 10 1.3816022164583826E-4 0.0 0.0 0.5780623673661872 0.0 11 1.3816022164583826E-4 0.0 0.0 0.6920445502240038 0.0 12 1.3816022164583826E-4 0.0 0.0 0.7829539760669654 0.0 13 1.3816022164583826E-4 0.0 0.0 0.8246323095967932 0.0 14 1.3816022164583826E-4 0.0 0.0 0.8438365804055648 0.0 15 1.3816022164583826E-4 0.0 0.0 0.8696725418533364 0.0 16 1.3816022164583826E-4 0.0 0.0 0.9176601921716576 0.0 17 1.3816022164583826E-4 0.0 0.0 0.9755953784484791 0.0 18 1.3816022164583826E-4 0.0 0.0 1.0511690196887526 0.0 19 1.8421362886111766E-4 0.0 0.0 1.0925710327752889 0.0 20 2.302670360763971E-4 0.0 0.0 1.1394534013204434 0.0 21 2.302670360763971E-4 0.0 0.0 1.2019939283187928 0.0 22 2.302670360763971E-4 0.0 0.0 1.2659160575336006 0.0 23 2.302670360763971E-4 0.0 0.0 1.336700144423485 0.0 24 2.302670360763971E-4 0.0 0.0 1.3913655387880217 0.0 25 2.302670360763971E-4 0.0 0.0 1.4389847618486207 0.0 26 2.302670360763971E-4 0.0 0.0 1.4902882574864418 0.0 27 2.302670360763971E-4 0.0 0.0 1.5439404768922425 0.0 28 2.302670360763971E-4 0.0 0.0 1.5982374439990568 0.0 29 2.302670360763971E-4 0.0 0.0 1.6594424221881632 0.0 30 2.302670360763971E-4 0.0 0.0 1.7372726803819853 0.0 31 2.302670360763971E-4 0.0 0.0 1.8050632958028767 0.0 32 2.302670360763971E-4 0.0 0.0 1.8750644747701013 0.0 33 2.302670360763971E-4 0.0 0.0 1.941427434567319 0.0 34 2.302670360763971E-4 0.0 0.0 2.0102312249469465 0.0 35 2.302670360763971E-4 0.0 0.0 2.0911470614241923 0.0 36 2.302670360763971E-4 0.0 0.0 2.164556192525348 0.0 37 2.302670360763971E-4 0.0 0.0 2.245656242631455 0.0 38 2.302670360763971E-4 0.0 0.0 2.3331116629332707 0.0 39 2.302670360763971E-4 0.0 0.0 2.463903339424664 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 25 3.8919556E-5 45.0 45 GTATGCG 50 2.1827873E-11 45.0 1 ACGCGTA 25 3.8919556E-5 45.0 45 ACGTTAG 90 0.0 42.500004 1 CGTTTTT 9685 0.0 42.351578 1 ACGGGAC 405 0.0 40.0 5 CGTTAGG 265 0.0 39.905663 2 ATAGGGC 795 0.0 38.773582 4 TATACGC 30 1.1402563E-4 37.499996 13 CGGTCTA 195 0.0 36.923077 31 AGGGCGA 1510 0.0 36.65563 6 ACGGGAT 570 0.0 36.31579 5 CGATAGT 75 1.8189894E-12 36.000004 10 CGTATAA 25 0.0021075201 36.0 20 TCGACCA 25 0.0021075201 36.0 38 GCGTAAG 100 0.0 36.0 1 GGGCGAT 2765 0.0 35.96745 7 TTTACGG 220 0.0 35.795456 2 TAGGGAC 1260 0.0 35.714287 5 AGGGTAC 625 0.0 35.64 6 >>END_MODULE