Basic Statistics
Measure | Value |
---|---|
Filename | SRR1546797_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1900729 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34745 | 1.8279828423725843 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTAAGT | 20 | 7.034451E-4 | 45.000004 | 17 |
ATAACGC | 35 | 1.2124838E-7 | 45.000004 | 11 |
GTACGAT | 20 | 7.034451E-4 | 45.000004 | 11 |
CGTTTTT | 20270 | 0.0 | 44.034286 | 1 |
CGGTCTA | 175 | 0.0 | 42.42857 | 31 |
GTTTTTT | 23500 | 0.0 | 39.054256 | 2 |
GCTACGA | 215 | 0.0 | 38.720932 | 10 |
CAACGTA | 35 | 6.250444E-6 | 38.57143 | 33 |
TATACGC | 35 | 6.250444E-6 | 38.57143 | 12 |
TAGGGAC | 1200 | 0.0 | 38.0625 | 5 |
TACGGGA | 380 | 0.0 | 37.894737 | 4 |
GTTTACG | 90 | 0.0 | 37.5 | 1 |
CATACGA | 400 | 0.0 | 37.125 | 18 |
GACCGAT | 425 | 0.0 | 37.058823 | 9 |
AGGGCGA | 1040 | 0.0 | 36.778843 | 6 |
CGTAAGG | 305 | 0.0 | 36.14754 | 2 |
CGGAATA | 25 | 0.0021074545 | 36.0 | 23 |
ACATACG | 425 | 0.0 | 36.0 | 17 |
TCGACGG | 25 | 0.0021074545 | 36.0 | 2 |
ATAGGGA | 1685 | 0.0 | 35.78635 | 4 |