##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546797_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1900729 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.605996436104252 31.0 31.0 33.0 30.0 34.0 2 31.988504410676114 31.0 31.0 34.0 30.0 34.0 3 31.93287049337386 33.0 31.0 34.0 30.0 34.0 4 35.73837827486191 37.0 35.0 37.0 35.0 37.0 5 35.72276952684996 37.0 35.0 37.0 33.0 37.0 6 35.78782719682816 37.0 35.0 37.0 35.0 37.0 7 36.07428570827298 37.0 35.0 37.0 35.0 37.0 8 35.94207222597225 37.0 35.0 37.0 35.0 37.0 9 37.71291751743673 39.0 38.0 39.0 35.0 39.0 10 37.436005869326976 39.0 37.0 39.0 35.0 39.0 11 37.192771299853895 39.0 37.0 39.0 34.0 39.0 12 36.69277840239192 39.0 35.0 39.0 33.0 39.0 13 36.53143872693056 39.0 35.0 39.0 33.0 39.0 14 37.621570986710886 40.0 35.0 41.0 33.0 41.0 15 37.77783208442656 40.0 35.0 41.0 33.0 41.0 16 37.835156405779045 40.0 35.0 41.0 33.0 41.0 17 37.71783931323192 40.0 35.0 41.0 33.0 41.0 18 37.50571912145288 39.0 36.0 41.0 33.0 41.0 19 37.32054753728701 38.0 36.0 41.0 33.0 41.0 20 37.08297658424741 38.0 35.0 41.0 33.0 41.0 21 36.96710998779942 38.0 35.0 41.0 32.0 41.0 22 36.910436995489626 38.0 35.0 41.0 32.0 41.0 23 36.79902868846637 38.0 35.0 41.0 32.0 41.0 24 36.736818347065785 38.0 35.0 41.0 32.0 41.0 25 36.650322060640946 38.0 35.0 40.0 32.0 41.0 26 36.59220435948523 38.0 35.0 40.0 32.0 41.0 27 36.486256062805374 38.0 35.0 40.0 31.0 41.0 28 36.426313272433894 38.0 35.0 40.0 31.0 41.0 29 36.30066148304151 38.0 35.0 40.0 31.0 41.0 30 36.20278535235691 38.0 35.0 40.0 31.0 41.0 31 35.97800685947339 38.0 35.0 40.0 30.0 41.0 32 35.599500507436886 38.0 35.0 40.0 29.0 41.0 33 35.269719144601886 38.0 35.0 40.0 26.0 41.0 34 34.8314457242458 38.0 34.0 40.0 23.0 41.0 35 34.530470677303285 38.0 34.0 40.0 22.0 41.0 36 34.35202493359127 37.0 34.0 40.0 21.0 41.0 37 34.061166005253774 37.0 33.0 40.0 18.0 41.0 38 34.111447239453916 37.0 33.0 40.0 20.0 41.0 39 33.98259720349403 37.0 33.0 40.0 18.0 41.0 40 33.85828121736449 37.0 33.0 40.0 18.0 41.0 41 33.74958187095583 37.0 33.0 40.0 18.0 41.0 42 33.72461197782535 36.0 33.0 40.0 18.0 41.0 43 33.60797988561231 36.0 33.0 40.0 18.0 41.0 44 33.45589613248391 36.0 33.0 40.0 18.0 41.0 45 33.437790447770304 36.0 33.0 40.0 18.0 41.0 46 33.261338149730975 35.0 33.0 40.0 18.0 41.0 47 33.13922868541491 35.0 33.0 40.0 17.0 41.0 48 33.00580829776365 35.0 33.0 40.0 17.0 41.0 49 33.03542377687719 35.0 33.0 40.0 17.0 41.0 50 32.91456067645625 35.0 32.0 40.0 17.0 41.0 51 32.3434182358453 35.0 31.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 4.0 12 8.0 13 14.0 14 22.0 15 61.0 16 145.0 17 448.0 18 1011.0 19 1980.0 20 3562.0 21 5972.0 22 9192.0 23 13566.0 24 20847.0 25 32596.0 26 45495.0 27 50748.0 28 47341.0 29 43670.0 30 45579.0 31 51855.0 32 63403.0 33 81176.0 34 140386.0 35 222388.0 36 137431.0 37 175019.0 38 260425.0 39 446299.0 40 82.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.116639983921957 21.83825258624454 26.754682019372567 20.290425410460934 2 37.61293693104067 23.06194097106952 26.932245470027556 12.392876627862256 3 26.858589520126223 23.132282403225286 37.027529963503476 12.98159811314501 4 24.114642329337848 25.222533038639384 36.520934862360704 14.141889769662061 5 22.049276882711844 28.852140415598438 35.134203771289855 13.964378930399862 6 20.49276882711844 36.3678883207443 32.937362454089985 10.201980398047276 7 78.81817976155465 4.501220321255687 14.692152326817762 1.9884475903719045 8 79.64665136376622 3.892980009249083 14.35549202437591 2.1048766026087886 9 75.49840087671626 5.378410073187709 15.631107853881327 3.492081196214716 10 43.08036548082341 23.72700158728572 22.094996183043452 11.097636748847416 11 35.14067497260262 22.251778133547706 28.212911993240485 14.394634900609187 12 31.116376926958022 20.44420851157635 32.40225197805684 16.037162583408787 13 22.600223387973774 28.059128892125074 32.98271347467209 16.357934245229067 14 17.827107388796616 30.46052330447949 34.8674113984687 16.8449579082552 15 17.07949949729814 23.285855058769556 42.762855725355905 16.871789718576398 16 19.755683214177296 20.942227955694896 41.49571033008914 17.80637850003867 17 20.611512740637934 21.51921710038622 33.06925921580615 24.8000109431697 18 22.774367098097624 23.162376119899257 35.15656361322419 18.906693168778926 19 25.712397716876 24.32224688527402 30.976009731003213 18.989345666846773 20 26.987382209667977 23.555435835408414 31.171040164063367 18.286141790860245 21 23.929976340656665 24.67484843973023 33.311219011232005 18.0839562083811 22 23.3002705803931 22.33022172019262 33.10656069329189 21.26294700612239 23 21.442667523881624 25.530257075048574 32.23810443256245 20.788970968507346 24 21.152042190128103 23.708640211203175 36.87422036492315 18.26509723374558 25 20.138168039736332 25.01645421309403 35.10311043815294 19.742267309016697 26 19.596691585176004 28.599553118829668 32.10331404424303 19.700441251751304 27 19.7154354986955 27.229762896236124 34.34035046553191 18.71445113953646 28 18.465388806084402 26.134919812345686 37.30926397187606 18.09042740969386 29 19.283495963917 24.488604109265445 37.27433000706571 18.953569919751843 30 20.347508771634462 25.618275935180662 34.91355158994259 19.120663703242283 31 24.84715075110655 24.567258141481503 31.25969036090889 19.325900746503052 32 25.885699644715267 25.531309302904308 30.599101713079563 17.98388933930087 33 24.618501638055715 25.9107952790745 30.146696346507053 19.32400673636273 34 20.787708295080467 26.92046051804334 31.253219159596135 21.03861202728006 35 21.656743281130556 26.810870986868725 31.23091192905459 20.30147380294613 36 25.62380013142326 26.03964058000904 28.761227928863082 19.575331359704617 37 22.229260457435014 28.746286293311673 29.40271864111086 19.621734608142454 38 22.18127886721358 29.479320829008238 27.322727227290162 21.016673076488022 39 21.63585655819425 28.45392478359619 28.23222037439319 21.677998283816365 40 23.44931865615772 26.258767030965487 28.055393483237225 22.236520829639574 41 20.39043966814838 25.499058519126084 29.534825848398167 24.57567596432737 42 21.737028266523005 27.531278788296493 27.906661075829327 22.825031869351182 43 22.06842742968619 27.310573995556442 28.133942292667708 22.48705628208966 44 21.593820055357707 28.88549603862518 28.86545109797346 20.65523280804365 45 20.645710145949263 30.496404274359996 27.146742118418775 21.711143461271966 46 22.19832495847646 29.36220786866513 28.078700330241713 20.3607668426167 47 22.073530734786495 27.488242668997 29.27250544396387 21.165721152252637 48 22.92825542199861 25.56992606520972 30.31163306289324 21.190185449898433 49 21.449296559372748 25.612330847795768 30.828382162843837 22.109990429987654 50 20.142061282802544 29.197376375064515 29.487265149319025 21.173297192813916 51 19.873480122626635 30.13380655527432 28.01351481457904 21.97919850752001 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1352.0 1 2345.0 2 3338.0 3 28720.5 4 54103.0 5 37375.5 6 20648.0 7 20663.5 8 20679.0 9 21466.0 10 22253.0 11 22521.0 12 22789.0 13 22014.0 14 21239.0 15 20218.5 16 19198.0 17 17935.5 18 16673.0 19 15603.0 20 14533.0 21 14063.0 22 13593.0 23 12970.0 24 12347.0 25 12905.0 26 15771.0 27 18079.0 28 20111.5 29 22144.0 30 24733.5 31 27323.0 32 32282.5 33 37242.0 34 41435.5 35 45629.0 36 49423.5 37 53218.0 38 60909.0 39 68600.0 40 83374.5 41 98149.0 42 109185.5 43 120222.0 44 123529.0 45 126836.0 46 124493.0 47 122150.0 48 124327.0 49 126504.0 50 125820.0 51 125136.0 52 120011.0 53 114886.0 54 108297.5 55 101709.0 56 96464.0 57 91219.0 58 87303.0 59 83387.0 60 78445.0 61 73503.0 62 65171.0 63 56839.0 64 50270.0 65 43701.0 66 37476.5 67 31252.0 68 26143.5 69 21035.0 70 18025.0 71 15015.0 72 12242.5 73 9470.0 74 7508.0 75 4293.0 76 3040.0 77 2169.0 78 1298.0 79 1022.0 80 746.0 81 544.0 82 342.0 83 241.0 84 140.0 85 106.5 86 73.0 87 50.0 88 27.0 89 22.0 90 17.0 91 17.5 92 18.0 93 21.0 94 24.0 95 13.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1900729.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.672117221075325 #Duplication Level Percentage of deduplicated Percentage of total 1 79.54132154059484 20.419941305093943 2 6.1289591094476705 3.14686713401836 3 2.503086751816155 1.92778609521435 4 1.4160383975735487 1.454108149282072 5 0.9846319906138736 1.263879394133005 6 0.7521803068007172 1.1586036604543448 7 0.5618279839391527 1.0096319703236445 8 0.47854407927170234 0.9828191758811764 9 0.41578761677189224 0.9606733593155605 >10 5.713488174847306 35.631326470470206 >50 1.2938981616779919 22.583669686248058 >100 0.20733322344211666 7.0528731710180095 >500 0.0022806639452574123 0.38775718597535397 >1k 4.14666171864984E-4 0.1706983246977296 >5k 0.0 0.0 >10k+ 2.07333085932492E-4 1.8493649178742175 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34745 1.8279828423725843 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013310682375025583 0.0 2 0.0 0.0 0.0 0.04424618133358306 0.0 3 0.0 0.0 0.0 0.07781224993147366 0.0 4 0.0 0.0 0.0 0.12326849329914996 0.0 5 0.0 0.0 0.0 0.2513246233418862 0.0 6 0.0 0.0 0.0 0.44609199943811034 0.0 7 0.0 0.0 0.0 0.6002959916958177 0.0 8 0.0 0.0 0.0 0.862195504987823 0.0 9 0.0 0.0 0.0 1.0455988202421282 0.0 10 0.0 0.0 0.0 1.272511757331003 0.0 11 0.0 0.0 0.0 1.4344496243283498 0.0 12 0.0 0.0 0.0 1.562821422727806 0.0 13 0.0 0.0 0.0 1.6296378915668672 0.0 14 0.0 0.0 0.0 1.665518861447371 0.0 15 0.0 0.0 0.0 1.6977170338328083 0.0 16 0.0 0.0 0.0 1.7444359506273646 0.0 17 0.0 0.0 0.0 1.7957320585943604 0.0 18 0.0 0.0 0.0 1.8674413869625812 0.0 19 0.0 0.0 0.0 1.9127924075446843 0.0 20 0.0 0.0 0.0 1.9651933547601999 0.0 21 0.0 0.0 0.0 2.0246442286091284 0.0 22 0.0 0.0 0.0 2.0923024797327763 0.0 23 0.0 0.0 0.0 2.16900989041573 0.0 24 0.0 0.0 0.0 2.227776816158432 0.0 25 0.0 0.0 0.0 2.281703493764761 0.0 26 0.0 0.0 0.0 2.338260741010423 0.0 27 0.0 0.0 0.0 2.393870983185925 0.0 28 0.0 0.0 0.0 2.4559524266741866 0.0 29 0.0 0.0 0.0 2.5262412474371674 0.0 30 0.0 0.0 0.0 2.62046825191808 0.0 31 0.0 0.0 0.0 2.695281652460714 0.0 32 0.0 0.0 0.0 2.775145746710867 0.0 33 0.0 0.0 0.0 2.852010991572181 0.0 34 0.0 0.0 0.0 2.936925779529854 0.0 35 0.0 0.0 0.0 3.0289957169065134 0.0 36 0.0 0.0 0.0 3.1125952200445197 0.0 37 0.0 0.0 0.0 3.2039812093149522 0.0 38 0.0 0.0 0.0 3.309414440459424 0.0 39 0.0 0.0 0.0 3.479191404981983 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGT 20 7.034451E-4 45.000004 17 ATAACGC 35 1.2124838E-7 45.000004 11 GTACGAT 20 7.034451E-4 45.000004 11 CGTTTTT 20270 0.0 44.034286 1 CGGTCTA 175 0.0 42.42857 31 GTTTTTT 23500 0.0 39.054256 2 GCTACGA 215 0.0 38.720932 10 CAACGTA 35 6.250444E-6 38.57143 33 TATACGC 35 6.250444E-6 38.57143 12 TAGGGAC 1200 0.0 38.0625 5 TACGGGA 380 0.0 37.894737 4 GTTTACG 90 0.0 37.5 1 CATACGA 400 0.0 37.125 18 GACCGAT 425 0.0 37.058823 9 AGGGCGA 1040 0.0 36.778843 6 CGTAAGG 305 0.0 36.14754 2 CGGAATA 25 0.0021074545 36.0 23 ACATACG 425 0.0 36.0 17 TCGACGG 25 0.0021074545 36.0 2 ATAGGGA 1685 0.0 35.78635 4 >>END_MODULE