SRR1546796_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546796_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3149322
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13155	0.4177089544987778	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	12696	0.4031343889256164	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	35	1.2128294E-7	45.0	17
TCGTTAG	95	0.0	45.0	1
ACCGGTC	25	3.892358E-5	45.0	8
CATATTG	85	0.0	45.0	1
GTCGACG	75	0.0	45.0	1
ACGTTCC	50	2.1827873E-11	45.0	39
ACGTTAG	40	6.8212103E-9	45.0	1
CTATCCG	20	7.0351595E-4	45.0	31
TTAGCCG	45	3.8562575E-10	45.0	1
GACACGT	20	7.0351595E-4	45.0	9
CGTTGTA	35	1.2128294E-7	45.0	41
ACTCTCG	20	7.0351595E-4	45.0	16
CCGGACT	20	7.0351595E-4	45.0	24
CCGTGAT	40	6.8212103E-9	45.0	17
TACGGCA	25	3.892358E-5	45.0	15
TAGCCGT	40	6.8212103E-9	45.0	44
ATCGTAG	80	0.0	45.0	1
GTTACTA	25	3.892358E-5	45.0	44
CGCCTAT	45	3.8562575E-10	45.0	33
CTAACCG	45	3.8562575E-10	45.0	1