##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546796_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3149322 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.65553760460188 31.0 31.0 33.0 30.0 34.0 2 32.008127781154165 33.0 31.0 34.0 30.0 34.0 3 32.04775948601 33.0 31.0 34.0 30.0 34.0 4 35.748385843048126 37.0 35.0 37.0 35.0 37.0 5 35.6592714241351 37.0 35.0 37.0 33.0 37.0 6 35.711274363180394 37.0 35.0 37.0 33.0 37.0 7 36.08839362885091 37.0 35.0 37.0 35.0 37.0 8 35.991512141343435 37.0 35.0 37.0 35.0 37.0 9 37.81879877637155 39.0 38.0 39.0 35.0 39.0 10 37.49913663956877 39.0 37.0 39.0 35.0 39.0 11 37.07727822051857 39.0 37.0 39.0 33.0 39.0 12 35.59643281950845 35.0 35.0 39.0 32.0 39.0 13 35.042191620926666 35.0 35.0 39.0 31.0 39.0 14 35.77713457055201 35.0 35.0 40.0 31.0 41.0 15 36.19247253853369 35.0 35.0 40.0 32.0 41.0 16 36.448498756240234 35.0 35.0 40.0 32.0 41.0 17 36.394296296155176 35.0 35.0 40.0 32.0 41.0 18 36.341530335735754 36.0 35.0 40.0 32.0 41.0 19 36.25871568547135 36.0 35.0 40.0 32.0 41.0 20 36.09756322154419 35.0 35.0 40.0 32.0 41.0 21 35.88789809362142 35.0 35.0 40.0 31.0 41.0 22 35.791996499564036 35.0 35.0 40.0 31.0 41.0 23 35.775938122554635 35.0 35.0 40.0 31.0 41.0 24 35.738692328062996 35.0 35.0 40.0 31.0 41.0 25 35.622044363834505 35.0 35.0 40.0 31.0 41.0 26 35.54397867223485 35.0 35.0 40.0 31.0 41.0 27 35.435021887250656 35.0 34.0 40.0 31.0 41.0 28 35.52172658114985 35.0 35.0 40.0 31.0 41.0 29 35.53117591659411 35.0 35.0 40.0 31.0 41.0 30 35.57860072739466 36.0 35.0 40.0 31.0 41.0 31 35.34258389583536 35.0 34.0 40.0 31.0 41.0 32 35.063400947886564 35.0 34.0 40.0 30.0 41.0 33 34.97082737173271 35.0 34.0 40.0 30.0 41.0 34 34.85071548733347 35.0 34.0 40.0 29.0 41.0 35 34.74278844779924 35.0 34.0 40.0 29.0 41.0 36 34.56567762839113 35.0 34.0 40.0 27.0 41.0 37 34.24816801838618 35.0 34.0 40.0 26.0 41.0 38 34.391133075627074 35.0 34.0 40.0 27.0 41.0 39 34.38150560660358 35.0 34.0 40.0 27.0 41.0 40 34.21701559891304 35.0 34.0 39.0 26.0 41.0 41 34.25564772354176 35.0 34.0 39.0 26.0 41.0 42 34.263286510556874 35.0 34.0 39.0 27.0 41.0 43 34.12218947443291 35.0 34.0 39.0 27.0 41.0 44 33.997309579649205 35.0 34.0 39.0 26.0 41.0 45 33.98825906020407 35.0 34.0 39.0 26.0 41.0 46 33.83610916889413 35.0 34.0 39.0 26.0 41.0 47 33.741611051521566 35.0 33.0 39.0 25.0 41.0 48 33.65416016526732 35.0 33.0 38.0 24.0 41.0 49 33.79383943591668 35.0 34.0 38.0 26.0 41.0 50 33.58753217359165 35.0 34.0 38.0 24.0 40.0 51 32.95487631941097 35.0 33.0 37.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 4.0 11 5.0 12 9.0 13 9.0 14 21.0 15 77.0 16 210.0 17 534.0 18 1370.0 19 2650.0 20 5030.0 21 8218.0 22 12489.0 23 18484.0 24 26480.0 25 37561.0 26 49191.0 27 56440.0 28 61512.0 29 68529.0 30 80615.0 31 98782.0 32 127312.0 33 174383.0 34 366046.0 35 765642.0 36 169794.0 37 188266.0 38 286405.0 39 543093.0 40 160.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.379039679016625 23.806552648474817 30.862960345115553 13.951447327393007 2 28.353309061442435 27.276347099470932 31.72816244258288 12.642181396503755 3 28.189623036323376 25.095306227816653 33.02872808814087 13.686342647719096 4 25.890683772570732 27.89927482804235 31.599976121844637 14.610065277542278 5 24.19200069094237 32.595428476351415 30.00595048712072 13.206620345585494 6 21.11857726837713 40.09869425863726 27.57717375358887 11.205554719396746 7 86.94649197509813 5.266339866168019 6.2253716831749815 1.5617964755588662 8 89.34710391633502 3.9175733697602215 5.397225180530921 1.33809753337385 9 86.77394690031696 4.809003334686005 6.505019175555882 1.912030589441156 10 65.3503833523533 16.955713007434618 9.718758513737242 7.975145126474842 11 61.47783554682563 15.154785696730915 14.392113604134476 8.975265152308973 12 52.84321514281487 21.014808901725516 16.976447629045236 9.165528326414384 13 21.404607086858697 51.91787311681689 17.15191396751428 9.525605828810138 14 11.828037907841752 52.91621498214536 25.27315403124863 9.982593078764253 15 10.412145852345361 22.49906487809122 57.14487118179723 9.943918087766193 16 11.480629799048812 15.423573708880834 55.657979717539206 17.437816774531154 17 13.697837185273528 15.577416345486425 27.579428207087116 43.145318262152934 18 22.051317712193292 21.50215189174051 35.35218056457866 21.094349831487538 19 31.167406825977146 23.947090834154146 23.79210509436634 21.093397245502366 20 34.51168219699351 22.481918330358088 22.004101200194835 21.00229827245356 21 21.65443863790365 30.142106777268253 26.367072023756222 21.836382561071876 22 22.909915213496745 25.55686589049961 23.795375639582105 27.73784325642154 23 18.98468940298896 31.757533843792412 23.044388601737136 26.213388151481492 24 20.63209160574879 23.647820070478662 40.1447676674535 15.575320656319041 25 14.596379792221944 24.226833585133562 39.68285872324265 21.49392789940184 26 13.793794346846719 39.77421171922084 26.647227561995884 19.784766371936563 27 15.654512304553169 38.4935233678868 29.03621795421364 16.81574637334639 28 11.67140101901298 30.234126583436055 43.34637741075698 14.748094986793983 29 11.762150710533886 24.834869219470097 42.92171457856643 20.481265491429586 30 16.208885595058238 32.71701020092579 33.47409378907587 17.600010414940105 31 32.84583157898748 26.73400814524523 21.93615006658576 18.48401020918153 32 33.74456470313293 28.591868344996165 24.029044981745276 13.634521970125633 33 29.29090769378298 29.849154833961087 23.341944710639307 17.517992761616625 34 18.532592094425404 30.623607239907507 27.9537627463943 22.890037919272782 35 19.37921876518184 27.899020805112972 30.69908380279946 22.022676626905728 36 33.578243190121555 23.50223317907791 26.641004000226083 16.278519630574454 37 20.24203939768623 32.96442853414163 29.790380278675855 17.00315178949628 38 19.95553328621208 35.427307845942714 21.864261577571302 22.752897290273907 39 19.906316343644757 33.11090450579521 27.147239945613688 19.835539204946333 40 23.874535534950063 27.377575236828754 22.924616790534596 25.82327243768659 41 16.6230382285457 24.22289622972818 26.476270130523332 32.677795411202794 42 23.988814100304765 25.247974008373863 23.015112459126122 27.748099432195243 43 24.548966412453222 27.159782327751813 23.47457643264169 24.816674827153275 44 20.12566514316415 34.14931848823334 26.165473076427244 19.55954329217527 45 15.637175239623005 43.400420788982515 19.451996334449127 21.51040763694535 46 23.482578154917153 35.55231888006371 24.11808001849287 16.84702294652627 47 23.097828675505394 29.07155889426359 24.8319797086484 22.998632721582613 48 25.04697836550216 23.461335487447773 29.880558418605656 21.61112772844441 49 22.060113256123064 21.522759501886437 32.41180165127605 24.005325590714445 50 18.785598932087606 34.95688913359765 25.85769254461754 20.39981938969721 51 17.72000449620585 38.644000200678114 20.839914114847577 22.79608118826846 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3299.0 1 3799.0 2 4299.0 3 12099.0 4 19899.0 5 14697.0 6 9495.0 7 10938.0 8 12381.0 9 13970.0 10 15559.0 11 16139.5 12 16720.0 13 16438.5 14 16157.0 15 14891.5 16 13626.0 17 12946.5 18 12267.0 19 11475.5 20 10684.0 21 9982.5 22 9281.0 23 8439.0 24 7597.0 25 8828.0 26 12240.0 27 14421.0 28 15825.0 29 17229.0 30 24004.0 31 30779.0 32 34891.5 33 39004.0 34 46554.0 35 54104.0 36 57543.0 37 60982.0 38 85867.5 39 110753.0 40 185959.5 41 261166.0 42 334640.5 43 408115.0 44 421571.5 45 435028.0 46 392043.0 47 349058.0 48 312593.0 49 276128.0 50 252479.5 51 228831.0 52 210467.5 53 192104.0 54 169357.0 55 146610.0 56 129240.0 57 111870.0 58 98429.0 59 84988.0 60 73979.5 61 62971.0 62 52821.0 63 42671.0 64 33487.5 65 24304.0 66 18937.5 67 13571.0 68 11142.0 69 8713.0 70 7020.5 71 5328.0 72 4728.5 73 4129.0 74 3240.0 75 1817.5 76 1284.0 77 940.0 78 596.0 79 474.0 80 352.0 81 235.5 82 119.0 83 239.5 84 360.0 85 198.0 86 36.0 87 31.5 88 27.0 89 18.0 90 9.0 91 8.0 92 7.0 93 4.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3149322.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.520006781140546 #Duplication Level Percentage of deduplicated Percentage of total 1 80.91835263859745 12.558533816697548 2 9.283560951119275 2.881618578290055 3 3.0203154431013886 1.406259484743512 4 1.340934612360225 0.8324525710758707 5 0.7532552900916449 0.584526360507616 6 0.4516778031619806 0.4206025540778762 7 0.32743451874953694 0.35572501659606137 8 0.2384565025697756 0.2960677229511981 9 0.19628538974234364 0.27417155218559897 >10 1.433837855330372 4.799400568323372 >50 0.4261893412402052 4.812377817405427 >100 1.5042401248265231 59.32628246559677 >500 0.09845635725433248 9.281456676235276 >1k 0.006591220569327696 1.3441346859922114 >5k 0.0 0.0 >10k+ 4.11951285582981E-4 0.8263901293215843 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13155 0.4177089544987778 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 12696 0.4031343889256164 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.350573234493011E-5 0.0 0.0 0.03959582411706393 0.0 2 6.350573234493011E-5 0.0 0.0 0.16479737543509365 0.0 3 6.350573234493011E-5 0.0 0.0 0.23024003261654413 0.0 4 6.350573234493011E-5 0.0 0.0 0.3557591125962985 0.0 5 6.350573234493011E-5 0.0 0.0 0.6013675324403157 0.0 6 6.350573234493011E-5 0.0 0.0 0.8515801178793404 0.0 7 6.350573234493011E-5 0.0 0.0 1.0435896996242366 0.0 8 6.350573234493011E-5 0.0 0.0 1.433356131891245 0.0 9 6.350573234493011E-5 0.0 0.0 1.5824993443033135 0.0 10 6.350573234493011E-5 0.0 0.0 1.878912350023275 0.0 11 6.350573234493011E-5 0.0 0.0 2.142334127790045 0.0 12 6.350573234493011E-5 0.0 0.0 2.4425257245845295 0.0 13 6.350573234493011E-5 0.0 0.0 2.5381018517636496 0.0 14 6.350573234493011E-5 0.0 0.0 2.5851913522974153 0.0 15 6.350573234493011E-5 0.0 0.0 2.639075966192088 0.0 16 6.350573234493011E-5 0.0 0.0 2.7673892983950195 0.0 17 6.350573234493011E-5 0.0 0.0 2.912976189795772 0.0 18 6.350573234493011E-5 0.0 0.0 3.1471535778177016 0.0 19 6.350573234493011E-5 0.0 0.0 3.243333009454098 0.0 20 6.350573234493011E-5 0.0 0.0 3.342846492038604 0.0 21 6.350573234493011E-5 0.0 0.0 3.4824638445989327 0.0 22 6.350573234493011E-5 0.0 0.0 3.617604043028944 0.0 23 6.350573234493011E-5 0.0 0.0 3.774431449054749 0.0 24 6.350573234493011E-5 0.0 0.0 3.8902659048519013 0.0 25 6.350573234493011E-5 0.0 0.0 3.9753318333279353 0.0 26 6.350573234493011E-5 0.0 0.0 4.07586140762996 0.0 27 6.350573234493011E-5 0.0 0.0 4.163404059667446 0.0 28 6.350573234493011E-5 0.0 0.0 4.251454757563692 0.0 29 6.350573234493011E-5 0.0 0.0 4.350396688557092 0.0 30 6.350573234493011E-5 0.0 0.0 4.4978252461958474 0.0 31 6.350573234493011E-5 0.0 0.0 4.6421102700835295 0.0 32 6.350573234493011E-5 0.0 0.0 4.750070015069911 0.0 33 6.350573234493011E-5 0.0 0.0 4.860538236483916 0.0 34 6.350573234493011E-5 0.0 0.0 4.993169958486303 0.0 35 6.350573234493011E-5 0.0 0.0 5.172097359368143 0.0 36 6.350573234493011E-5 0.0 0.0 5.309841292824297 0.0 37 6.350573234493011E-5 0.0 0.0 5.442155486164959 0.0 38 6.350573234493011E-5 0.0 0.0 5.569325715185681 0.0 39 6.350573234493011E-5 0.0 0.0 5.707069648641835 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTC 35 1.2128294E-7 45.0 17 TCGTTAG 95 0.0 45.0 1 ACCGGTC 25 3.892358E-5 45.0 8 CATATTG 85 0.0 45.0 1 GTCGACG 75 0.0 45.0 1 ACGTTCC 50 2.1827873E-11 45.0 39 ACGTTAG 40 6.8212103E-9 45.0 1 CTATCCG 20 7.0351595E-4 45.0 31 TTAGCCG 45 3.8562575E-10 45.0 1 GACACGT 20 7.0351595E-4 45.0 9 CGTTGTA 35 1.2128294E-7 45.0 41 ACTCTCG 20 7.0351595E-4 45.0 16 CCGGACT 20 7.0351595E-4 45.0 24 CCGTGAT 40 6.8212103E-9 45.0 17 TACGGCA 25 3.892358E-5 45.0 15 TAGCCGT 40 6.8212103E-9 45.0 44 ATCGTAG 80 0.0 45.0 1 GTTACTA 25 3.892358E-5 45.0 44 CGCCTAT 45 3.8562575E-10 45.0 33 CTAACCG 45 3.8562575E-10 45.0 1 >>END_MODULE