SRR1546794_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546794_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	853977
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3994	0.467694094805832	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1317	0.1542196101300152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCG	20	7.032266E-4	45.000004	1
AACCGTT	20	7.032266E-4	45.000004	33
CGCATCG	20	7.032266E-4	45.000004	21
TACGACA	20	7.032266E-4	45.000004	22
TCGTCGG	20	7.032266E-4	45.000004	1
CATACGA	20	7.032266E-4	45.000004	18
GCGATCG	20	7.032266E-4	45.000004	9
CGTACCC	20	7.032266E-4	45.000004	35
GATTCGC	20	7.032266E-4	45.000004	10
CGACCGT	25	3.8899605E-5	45.0	31
ATCGTAG	25	3.8899605E-5	45.0	1
CGTTTTT	2420	0.0	42.210747	1
ATACGCG	50	1.0804797E-9	40.5	1
ATAGGGC	225	0.0	40.0	4
CGCTGAA	130	0.0	39.807693	37
TCGATCA	85	0.0	39.705883	17
CCGTGCA	40	3.4568257E-7	39.375004	41
AATACGG	40	3.4568257E-7	39.375004	2
TCACGAC	120	0.0	39.374996	25
GTGGCGA	120	0.0	39.374996	28