##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546794_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 853977 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.587507626083607 31.0 31.0 33.0 30.0 34.0 2 31.95533134967335 31.0 31.0 34.0 30.0 34.0 3 32.02045488344534 33.0 31.0 34.0 30.0 34.0 4 35.72932994682527 37.0 35.0 37.0 33.0 37.0 5 35.65976835441704 37.0 35.0 37.0 33.0 37.0 6 35.71416092002478 37.0 35.0 37.0 33.0 37.0 7 36.043775183640776 37.0 35.0 37.0 35.0 37.0 8 35.92506004260068 37.0 35.0 37.0 35.0 37.0 9 37.70746167636833 39.0 38.0 39.0 35.0 39.0 10 37.40086793906627 39.0 37.0 39.0 35.0 39.0 11 37.041344204820504 39.0 37.0 39.0 33.0 39.0 12 36.01180008360881 37.0 35.0 39.0 32.0 39.0 13 35.64288382474001 37.0 35.0 39.0 31.0 39.0 14 36.5118685866247 38.0 35.0 41.0 31.0 41.0 15 36.811743173410996 38.0 35.0 41.0 32.0 41.0 16 36.97844087135836 38.0 35.0 41.0 33.0 41.0 17 36.89291163579347 38.0 35.0 41.0 32.0 41.0 18 36.80112696243576 38.0 35.0 41.0 32.0 41.0 19 36.76212357007273 37.0 35.0 40.0 32.0 41.0 20 36.63336717499418 37.0 35.0 40.0 32.0 41.0 21 36.470886218247095 37.0 35.0 40.0 32.0 41.0 22 36.39408906797256 37.0 35.0 40.0 31.0 41.0 23 36.32773833487319 37.0 35.0 40.0 31.0 41.0 24 36.319943042962514 37.0 35.0 40.0 31.0 41.0 25 36.19970444168871 37.0 35.0 40.0 31.0 41.0 26 36.12453262792792 37.0 35.0 40.0 31.0 41.0 27 36.01761522851318 36.0 35.0 40.0 31.0 41.0 28 36.03879378484432 36.0 35.0 40.0 31.0 41.0 29 35.987463362596415 36.0 35.0 40.0 31.0 41.0 30 36.044741251813576 36.0 35.0 40.0 31.0 41.0 31 35.88151905730482 36.0 35.0 40.0 31.0 41.0 32 35.67583201889512 36.0 35.0 40.0 30.0 41.0 33 35.604001044524615 36.0 35.0 40.0 30.0 41.0 34 35.44079290191656 36.0 35.0 40.0 29.0 41.0 35 35.33185671276861 36.0 34.0 40.0 29.0 41.0 36 35.18083508103848 36.0 34.0 40.0 29.0 41.0 37 34.87932227682947 36.0 34.0 40.0 27.0 41.0 38 34.98353351436865 35.0 34.0 40.0 27.0 41.0 39 34.907053702851485 36.0 34.0 40.0 27.0 41.0 40 34.78379979788683 36.0 34.0 40.0 27.0 41.0 41 34.762611873621886 36.0 34.0 40.0 27.0 41.0 42 34.78410425573522 36.0 34.0 40.0 27.0 41.0 43 34.66748753186561 35.0 34.0 40.0 27.0 41.0 44 34.56491568274087 35.0 34.0 40.0 27.0 41.0 45 34.53962694545638 35.0 34.0 40.0 27.0 41.0 46 34.39911028048765 35.0 34.0 40.0 26.0 41.0 47 34.28046305696758 35.0 34.0 40.0 26.0 41.0 48 34.17664058868096 35.0 34.0 40.0 25.0 41.0 49 34.26218973110517 35.0 34.0 39.0 26.0 41.0 50 34.10315383201187 35.0 34.0 39.0 26.0 41.0 51 33.48797098750903 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 4.0 14 11.0 15 30.0 16 58.0 17 156.0 18 386.0 19 772.0 20 1400.0 21 2265.0 22 3186.0 23 4725.0 24 6852.0 25 9258.0 26 12201.0 27 14345.0 28 15665.0 29 17483.0 30 20492.0 31 25161.0 32 31732.0 33 42804.0 34 84456.0 35 153943.0 36 53122.0 37 67155.0 38 101864.0 39 184403.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.98089175703795 23.235871692094754 28.927359870347797 13.855876680519499 2 31.632350754177217 25.097631435038647 29.895770026593222 13.37424778419091 3 29.267767164689445 24.96308448588194 31.827437975495826 13.941710373932786 4 26.54954407437203 27.546058032007885 30.907155579131523 14.997242314488563 5 23.991161354462708 31.638322811972685 29.30289691642749 15.067618917137112 6 21.854218556237463 39.58350166339375 27.394297504499537 11.167982275869257 7 86.37410609419224 4.758090674573203 6.760837821159117 2.106965410075447 8 87.93117379039482 3.751154890588388 6.250753825922713 2.0669174930940764 9 84.19020652781046 4.796499203140132 7.7934183239127055 3.2198759451366956 10 57.370397563400424 19.705565840766205 12.693316096335147 10.230720499498231 11 50.3765323890456 19.843157368406878 17.88561050239058 11.894699740156936 12 43.62986356775417 21.545545137632512 21.856209242169285 12.968382052444035 13 22.772041869980107 40.78880344552605 22.688198862498638 13.750955821995205 14 15.699837349249455 42.225961589129454 27.77428431913272 14.29991674248838 15 14.37076174182677 23.23481779954261 48.406924308265914 13.987496150364706 16 17.363113994873398 18.646169627519242 45.888706604510425 18.102009773096935 17 18.669706561183734 18.42918486095059 27.906137987322843 34.994970590542835 18 23.634008878459255 22.737848911621743 32.684721017076576 20.94342119284243 19 30.145191263933334 24.148074245559307 25.25758890461921 20.449145585888147 20 32.10472881588146 23.936124743406438 23.846192578957044 20.11295386175506 21 24.59410499346001 26.74123541968929 27.653906369843682 21.010753217007018 22 23.88061973566033 24.178988427088786 26.97086689688364 24.969524940367247 23 20.582521543320254 29.384397940459756 26.018616426437713 24.01446408978228 24 21.918857299435466 24.251121517324236 35.99113325066131 17.83888793257898 25 18.704016618714554 25.061681989093383 34.97248754943049 21.261813842761573 26 17.544032216324325 34.14494769765462 27.158342671992337 21.152677414028716 27 18.768186965222718 32.4704295314745 29.542247624936035 19.219135878366746 28 15.913777537334145 28.159072199836764 38.218945006715636 17.708205256113455 29 16.428779697813876 25.38054303570237 37.799612870135846 20.39106439634791 30 19.3882270833992 28.595852113113118 32.324758160934074 19.691162642553607 31 29.107575496763964 25.885123369833146 25.063672675025206 19.943628458377685 32 30.653635870755302 26.66359866834821 25.598581694823164 17.084183766073323 33 27.80156842631593 26.790299972950095 25.422347440270638 19.98578416046334 34 20.293989182378446 28.03705486213329 29.186851636519485 22.48210431896878 35 20.72210375689275 26.65551882544846 30.86804445552983 21.754332962128956 36 29.942141298887442 24.116223270650146 27.18995944855658 18.751675981905834 37 22.25411223018887 29.9889809678715 28.47769904810083 19.279207753838804 38 21.81136025911705 32.33787326824961 23.38458764111914 22.466178831514195 39 21.30467213988199 30.268145395016493 27.157874275302497 21.269308189799023 40 23.688108696135846 26.205389606511652 24.888492313024823 25.218009384327683 41 18.633054520203707 24.589303927389146 26.614065718397566 30.16357583400958 42 23.23165612188619 26.85283093104381 24.135661733278532 25.77985121379147 43 23.27357762562692 27.487976842467653 25.174214293827585 24.06423123807784 44 20.82433133445046 31.749567025809828 26.325299159110845 21.100802480628868 45 18.58797133880655 36.043008184061165 22.858578158428156 22.510442318704133 46 23.556606325463097 31.179762452618746 25.99098102173712 19.272650200181037 47 22.810450398547033 27.662220411088356 27.092767135414654 22.434562054949957 48 25.0134371300398 23.804856571078613 29.14270524850201 22.03900105037958 49 21.733840606948434 23.125915569154675 31.296041930871677 23.84420189302522 50 19.976767524183906 32.14887520389894 26.398954538588278 21.47540273332888 51 19.510244421102676 34.1435425075851 23.727454018082454 22.61875905322977 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 517.0 1 841.0 2 1165.0 3 3910.5 4 6656.0 5 4782.5 6 2909.0 7 2982.0 8 3055.0 9 3277.5 10 3500.0 11 3528.5 12 3557.0 13 3476.5 14 3396.0 15 3255.0 16 3114.0 17 3077.5 18 3041.0 19 2842.0 20 2643.0 21 2878.5 22 3114.0 23 3308.0 24 3502.0 25 4241.0 26 5602.0 27 6224.0 28 7372.0 29 8520.0 30 9737.5 31 10955.0 32 12501.0 33 14047.0 34 15388.5 35 16730.0 36 19878.5 37 23027.0 38 27406.5 39 31786.0 40 45584.5 41 59383.0 42 72890.5 43 86398.0 44 86217.0 45 86036.0 46 81026.5 47 76017.0 48 70889.5 49 65762.0 50 64289.0 51 62816.0 52 58900.5 53 54985.0 54 49613.5 55 44242.0 56 39919.0 57 35596.0 58 33732.0 59 31868.0 60 29079.5 61 26291.0 62 23816.0 63 21341.0 64 18859.5 65 16378.0 66 13504.0 67 10630.0 68 8858.5 69 7087.0 70 6240.0 71 5393.0 72 4326.5 73 3260.0 74 2642.0 75 1542.5 76 1061.0 77 805.0 78 549.0 79 374.0 80 199.0 81 156.0 82 113.0 83 88.0 84 63.0 85 38.0 86 13.0 87 13.5 88 14.0 89 13.5 90 13.0 91 8.0 92 3.0 93 3.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 853977.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.477977187501544 #Duplication Level Percentage of deduplicated Percentage of total 1 76.85372147136871 17.275161980080235 2 4.834271172809787 2.1732927428122943 3 1.9529154056168607 1.3169276380972836 4 1.2158144389866934 1.0931619689511152 5 0.9222513144791351 1.0365172004002654 6 0.7340458335354949 0.9899919300474844 7 0.6642244610866102 1.045129559857973 8 0.6010650919711287 1.0808581940424438 9 0.5319143117434593 1.0760721988567554 >10 10.753956948492831 58.490545481889164 >50 0.8917809828547849 12.46576075650699 >100 0.042990029743721556 1.3307056131294033 >500 0.0 0.0 >1k 0.0010485373108224771 0.6258747353285742 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3994 0.467694094805832 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1317 0.1542196101300152 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.3419834492029645E-4 0.0 0.0 0.014637396557518528 0.0 2 2.3419834492029645E-4 0.0 0.0 0.04754226401882018 0.0 3 2.3419834492029645E-4 0.0 0.0 0.06932271009640775 0.0 4 2.3419834492029645E-4 0.0 0.0 0.1083167345256371 0.0 5 2.3419834492029645E-4 0.0 0.0 0.20269866752851656 0.0 6 2.3419834492029645E-4 0.0 0.0 0.32740928619857446 0.0 7 2.3419834492029645E-4 0.0 0.0 0.42261091340867496 0.0 8 2.3419834492029645E-4 0.0 0.0 0.6445138452206558 0.0 9 2.3419834492029645E-4 0.0 0.0 0.7509569929869305 0.0 10 2.3419834492029645E-4 0.0 0.0 0.9034201155300435 0.0 11 2.3419834492029645E-4 0.0 0.0 1.0290675275797827 0.0 12 2.3419834492029645E-4 0.0 0.0 1.1433563199008872 0.0 13 2.3419834492029645E-4 0.0 0.0 1.1832871377097978 0.0 14 2.3419834492029645E-4 0.0 0.0 1.200032319371599 0.0 15 2.3419834492029645E-4 0.0 0.0 1.2277848232446542 0.0 16 2.3419834492029645E-4 0.0 0.0 1.2834069301632245 0.0 17 2.3419834492029645E-4 0.0 0.0 1.3428933097729798 0.0 18 2.3419834492029645E-4 0.0 0.0 1.4325912758774533 0.0 19 2.3419834492029645E-4 0.0 0.0 1.4784941514818315 0.0 20 2.3419834492029645E-4 0.0 0.0 1.5280271014324742 0.0 21 2.3419834492029645E-4 0.0 0.0 1.5968814148390413 0.0 22 2.3419834492029645E-4 0.0 0.0 1.6687803067295723 0.0 23 2.3419834492029645E-4 0.0 0.0 1.7527404133834985 0.0 24 2.3419834492029645E-4 0.0 0.0 1.813046487200475 0.0 25 2.3419834492029645E-4 0.0 0.0 1.8696053874987266 0.0 26 2.3419834492029645E-4 0.0 0.0 1.9242907010376158 0.0 27 2.3419834492029645E-4 0.0 0.0 1.9815521963706282 0.0 28 2.3419834492029645E-4 0.0 0.0 2.0363546090819775 0.0 29 2.3419834492029645E-4 0.0 0.0 2.105911517523306 0.0 30 2.3419834492029645E-4 0.0 0.0 2.194555591075638 0.0 31 2.3419834492029645E-4 0.0 0.0 2.269616160622593 0.0 32 2.3419834492029645E-4 0.0 0.0 2.3409295566508233 0.0 33 2.3419834492029645E-4 0.0 0.0 2.4106035642646115 0.0 34 2.3419834492029645E-4 0.0 0.0 2.486015431328947 0.0 35 2.3419834492029645E-4 0.0 0.0 2.5916388848880003 0.0 36 2.3419834492029645E-4 0.0 0.0 2.6761844874042273 0.0 37 2.3419834492029645E-4 0.0 0.0 2.7579197097814108 0.0 38 2.3419834492029645E-4 0.0 0.0 2.854994923750874 0.0 39 2.3419834492029645E-4 0.0 0.0 3.0048818644998634 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTCG 20 7.032266E-4 45.000004 1 AACCGTT 20 7.032266E-4 45.000004 33 CGCATCG 20 7.032266E-4 45.000004 21 TACGACA 20 7.032266E-4 45.000004 22 TCGTCGG 20 7.032266E-4 45.000004 1 CATACGA 20 7.032266E-4 45.000004 18 GCGATCG 20 7.032266E-4 45.000004 9 CGTACCC 20 7.032266E-4 45.000004 35 GATTCGC 20 7.032266E-4 45.000004 10 CGACCGT 25 3.8899605E-5 45.0 31 ATCGTAG 25 3.8899605E-5 45.0 1 CGTTTTT 2420 0.0 42.210747 1 ATACGCG 50 1.0804797E-9 40.5 1 ATAGGGC 225 0.0 40.0 4 CGCTGAA 130 0.0 39.807693 37 TCGATCA 85 0.0 39.705883 17 CCGTGCA 40 3.4568257E-7 39.375004 41 AATACGG 40 3.4568257E-7 39.375004 2 TCACGAC 120 0.0 39.374996 25 GTGGCGA 120 0.0 39.374996 28 >>END_MODULE