SRR1546793_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546793_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	800057
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3662	0.45771738763613096	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1198	0.14973933107266107	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAG	30	2.1646701E-6	45.000004	1
ACGTTCA	30	2.1646701E-6	45.000004	18
GACCGTA	20	7.031999E-4	45.000004	16
CGTTGCA	20	7.031999E-4	45.000004	33
ACTCTCG	20	7.031999E-4	45.000004	36
ATATGCG	30	2.1646701E-6	45.000004	1
ATCGTAC	20	7.031999E-4	45.000004	21
ATATACG	30	2.1646701E-6	45.000004	1
GTCGTAC	20	7.031999E-4	45.000004	31
TCGTACT	20	7.031999E-4	45.000004	13
CGGTCTA	80	0.0	45.000004	31
GACGATA	20	7.031999E-4	45.000004	10
CAATCGT	20	7.031999E-4	45.000004	38
TCGACCC	30	2.1646701E-6	45.000004	19
CGTTAGG	115	0.0	43.04348	2
TAGGGTA	295	0.0	41.949154	5
ACGGGTG	70	0.0	41.785717	5
CGTTTTT	2315	0.0	41.306694	1
TTTAGCG	60	3.6379788E-12	41.250004	1
CGTATGG	110	0.0	40.909092	2