##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546793_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 800057 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.61602735805074 31.0 31.0 33.0 30.0 34.0 2 31.99972001994858 31.0 31.0 34.0 30.0 34.0 3 32.08333281253711 33.0 31.0 34.0 30.0 34.0 4 35.78796635739703 37.0 35.0 37.0 35.0 37.0 5 35.720612406366044 37.0 35.0 37.0 33.0 37.0 6 35.76947892462662 37.0 35.0 37.0 33.0 37.0 7 36.072382342758075 37.0 35.0 37.0 35.0 37.0 8 35.95388578563777 37.0 35.0 37.0 35.0 37.0 9 37.75091024764485 39.0 38.0 39.0 35.0 39.0 10 37.43990365686445 39.0 37.0 39.0 35.0 39.0 11 37.089283638540756 39.0 37.0 39.0 33.0 39.0 12 36.17014662705282 37.0 35.0 39.0 33.0 39.0 13 35.846008471896376 37.0 35.0 39.0 32.0 39.0 14 36.770260118966526 38.0 35.0 41.0 32.0 41.0 15 37.03469752780114 38.0 35.0 41.0 32.0 41.0 16 37.148375678232924 38.0 35.0 41.0 33.0 41.0 17 37.078875630111355 38.0 35.0 41.0 33.0 41.0 18 36.97735411351941 38.0 35.0 41.0 32.0 41.0 19 36.935930814929435 38.0 35.0 41.0 32.0 41.0 20 36.835621711953024 38.0 35.0 41.0 32.0 41.0 21 36.65593701448772 38.0 35.0 41.0 32.0 41.0 22 36.57650017436258 38.0 35.0 41.0 32.0 41.0 23 36.51269597041211 38.0 35.0 40.0 32.0 41.0 24 36.477384736337534 38.0 35.0 40.0 32.0 41.0 25 36.35394478143432 37.0 35.0 40.0 31.0 41.0 26 36.29206169060454 37.0 35.0 40.0 31.0 41.0 27 36.19478112184507 37.0 35.0 40.0 31.0 41.0 28 36.206125313571405 37.0 35.0 40.0 31.0 41.0 29 36.15303534623158 37.0 35.0 40.0 31.0 41.0 30 36.18011091709716 37.0 35.0 40.0 31.0 41.0 31 36.021878441161064 37.0 35.0 40.0 31.0 41.0 32 35.83600418470184 37.0 35.0 40.0 30.0 41.0 33 35.75856345235402 37.0 35.0 40.0 30.0 41.0 34 35.59404767410322 37.0 35.0 40.0 30.0 41.0 35 35.46211957398035 37.0 35.0 40.0 29.0 41.0 36 35.33470240245383 36.0 35.0 40.0 29.0 41.0 37 35.04446433191635 36.0 34.0 40.0 27.0 41.0 38 35.14971933249756 36.0 34.0 40.0 28.0 41.0 39 35.07172488960162 36.0 34.0 40.0 28.0 41.0 40 34.92849384481356 36.0 34.0 40.0 27.0 41.0 41 34.88984409860797 36.0 34.0 40.0 27.0 41.0 42 34.86909932667297 36.0 34.0 40.0 27.0 41.0 43 34.75299009945542 35.0 34.0 40.0 27.0 41.0 44 34.63256742957064 35.0 34.0 40.0 27.0 41.0 45 34.59961977709088 35.0 34.0 40.0 27.0 41.0 46 34.43575395253088 35.0 34.0 40.0 26.0 41.0 47 34.30331588874293 35.0 34.0 40.0 26.0 41.0 48 34.20636154673979 35.0 34.0 40.0 25.0 41.0 49 34.25700293854063 35.0 34.0 39.0 26.0 41.0 50 34.1227412546856 35.0 34.0 39.0 26.0 41.0 51 33.51760812042142 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 3.0 13 8.0 14 13.0 15 35.0 16 58.0 17 152.0 18 376.0 19 674.0 20 1159.0 21 1812.0 22 2755.0 23 4018.0 24 5907.0 25 8095.0 26 11011.0 27 13066.0 28 14183.0 29 15818.0 30 18544.0 31 22763.0 32 29044.0 33 39462.0 34 77502.0 35 135042.0 36 53658.0 37 68228.0 38 101800.0 39 174822.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.82598239875409 23.982041279558832 30.043484401736375 14.148491919950704 2 30.61181890790281 25.36169297937522 30.490327564161053 13.536160548560916 3 29.791252373268406 24.875102648936263 31.45563378609274 13.87801119170259 4 26.653600930933667 27.408547141016204 30.206722771002564 15.73112915704756 5 24.40951082235391 31.363765331720117 29.731506630152605 14.495217215773376 6 21.636208420150062 39.67742298361242 27.146565807186242 11.539802789051281 7 86.8134395424326 4.617545999847511 6.506661400375223 2.062353057344664 8 88.72667822417652 3.1367765046740423 6.0523187722874745 2.084226498861956 9 85.24605121885067 4.398436611391438 7.290605544354965 3.0649066254029402 10 56.04813157062559 19.550482028155493 13.0678189179021 11.333567483316815 11 47.468117896599864 19.944703939844285 18.58580076169573 14.001377401860118 12 41.1540677726712 20.983879898557227 22.54814344477956 15.313908883992017 13 22.98348742652086 36.44377838079037 23.79692946877535 16.77580472391342 14 16.933293502837923 38.76973765619199 28.33160637304592 15.96536246792416 15 16.444203350511277 22.106049943941493 45.83023459578505 15.61951210976218 16 18.732415315408776 18.21432722918492 43.52964851254348 19.523608942862822 17 20.51666318774787 18.467684177502353 27.054447370624846 33.961205264124935 18 24.714614083746532 22.49152247902337 31.164904500554336 21.62895893667576 19 30.34521290358062 24.132655548292185 25.009718057588397 20.5124134905388 20 32.35269487049048 23.364335291110507 23.898422237415584 20.38454760098343 21 25.817160527312428 25.446686923556694 27.91813583282191 20.81801671630896 22 25.263449979188984 22.298786211482433 27.289805601350903 25.147958207977684 23 23.018484932948528 27.245308771750015 25.339194582386003 24.397011712915454 24 23.66981352578629 23.165099486661575 34.23868549365858 18.92640149389356 25 20.35367480067045 24.52037792307298 32.8282859846236 22.297661291632974 26 20.047946583805903 31.590624168028025 26.335498595725053 22.025930652441016 27 20.13956505598976 30.318589800476715 29.881120970130876 19.660724173402645 28 17.971719514984557 26.484237998042637 36.16042356982065 19.383618917152155 29 18.595550067057722 24.84485480409521 36.491274996656486 20.068320132190582 30 21.55683907521589 26.45861482369381 31.80560885036941 20.178937250720885 31 30.265718567552064 24.353014847692105 24.982345007918187 20.39892157683765 32 30.57444657068184 25.62242440226134 25.500808067425197 18.302320959631626 33 28.323731934099694 26.04989394505641 24.921349353858538 20.705024766985353 34 21.384601347154014 27.39392318297321 28.046876660037974 23.174598809834798 35 21.902564442283488 26.111889527871142 29.7452556505349 22.240290379310473 36 30.095105723717186 23.7795557066559 26.51873554009277 19.606603029534146 37 22.844122356282114 29.197419683847524 28.13262055078576 19.825837409084603 38 23.77655592039067 30.029485399165313 23.710310640366874 22.483648040077146 39 22.67213461040901 29.21104371313544 25.911153830289592 22.205667846165962 40 24.274645431513004 25.103336387282404 25.583552171907755 25.03846600929684 41 20.293804066460265 23.01248536041807 27.35180118416563 29.34190938895604 42 24.648868768100275 25.11558551453209 24.55687532263326 25.678670394734375 43 24.283394808119922 25.52793113490664 25.240951582199767 24.947722474773673 44 21.48471921375602 29.35040878337418 26.97757784757836 22.187294155291433 45 20.306053193709946 33.97695414201738 22.88811922150547 22.828873442767204 46 23.690937020737273 29.69638413263055 26.1695104223824 20.443168424249773 47 23.7165601950861 26.610728985559778 26.924706614653704 22.748004204700415 48 26.209882545868606 22.96911345066664 28.51721814820694 22.303785855257814 49 22.91361740475991 22.472898805960074 30.583445929477527 24.03003785980249 50 21.36922744254472 29.95436575144021 26.34087321278359 22.33553359323148 51 20.96013159062417 31.85748015453899 24.25352193656202 22.928866318274824 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 557.0 1 994.0 2 1431.0 3 3887.5 4 6344.0 5 4552.0 6 2760.0 7 2851.0 8 2942.0 9 3129.0 10 3316.0 11 3315.0 12 3314.0 13 3255.0 14 3196.0 15 2944.0 16 2692.0 17 2500.5 18 2309.0 19 2362.0 20 2415.0 21 2559.0 22 2703.0 23 2704.5 24 2706.0 25 2990.5 26 4233.5 27 5192.0 28 5634.5 29 6077.0 30 7837.0 31 9597.0 32 10111.5 33 10626.0 34 12569.0 35 14512.0 36 16113.5 37 17715.0 38 22339.0 39 26963.0 40 37887.5 41 48812.0 42 60509.5 43 72207.0 44 71612.0 45 71017.0 46 67661.0 47 64305.0 48 61494.5 49 58684.0 50 58210.5 51 57737.0 52 54606.0 53 51475.0 54 47940.5 55 44406.0 56 42329.0 57 40252.0 58 38895.0 59 37538.0 60 35204.5 61 32871.0 62 29534.0 63 26197.0 64 23310.0 65 20423.0 66 17641.0 67 14859.0 68 12789.5 69 10720.0 70 8731.5 71 6743.0 72 5696.0 73 4649.0 74 3881.5 75 2410.5 76 1707.0 77 1237.0 78 767.0 79 626.0 80 485.0 81 345.0 82 205.0 83 151.5 84 98.0 85 75.0 86 52.0 87 46.0 88 40.0 89 34.0 90 28.0 91 16.5 92 5.0 93 8.5 94 12.0 95 9.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 800057.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.992097781291527 #Duplication Level Percentage of deduplicated Percentage of total 1 78.98215781614543 16.58001179853924 2 5.213366544393688 2.1887900053925247 3 1.7459019494525447 1.0995043331836596 4 1.0647555122108254 0.8940580730199515 5 0.7360818166208638 0.7725950734767937 6 0.6247263838946302 0.7868590402361249 7 0.4812057803968298 0.7071063156509064 8 0.44834435053988425 0.7529350756978316 9 0.404451586758116 0.7641258531322397 >10 8.306909250049817 46.06112334678501 >50 1.8802303864792247 25.682361327540825 >100 0.11067216719651816 3.1002080793168045 >500 0.0 0.0 >1k 0.00119645586158398 0.6103216780280986 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3662 0.45771738763613096 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1198 0.14973933107266107 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009374332078839382 0.0 2 0.0 0.0 0.0 0.04412185631773736 0.0 3 0.0 0.0 0.0 0.06649526221256735 0.0 4 0.0 0.0 0.0 0.10749234117069159 0.0 5 0.0 0.0 0.0 0.20398546603554496 0.0 6 0.0 0.0 0.0 0.3282266138537629 0.0 7 0.0 0.0 0.0 0.400846439691172 0.0 8 0.0 0.0 0.0 0.5843333662476549 0.0 9 0.0 0.0 0.0 0.6730770432606676 0.0 10 0.0 0.0 0.0 0.8271910626367871 0.0 11 0.0 0.0 0.0 0.993304227073821 0.0 12 0.0 0.0 0.0 1.134919137011488 0.0 13 0.0 0.0 0.0 1.1942899068441373 0.0 14 0.0 0.0 0.0 1.2164133305501983 0.0 15 0.0 0.0 0.0 1.2442863445979473 0.0 16 0.0 0.0 0.0 1.3092817136779005 0.0 17 0.0 0.0 0.0 1.3804016463826951 0.0 18 0.0 0.0 0.0 1.4847692101937737 0.0 19 0.0 0.0 0.0 1.541515167044348 0.0 20 0.0 0.0 0.0 1.6051356340860714 0.0 21 0.0 0.0 0.0 1.6817551749437853 0.0 22 0.0 0.0 0.0 1.757624769235192 0.0 23 0.0 0.0 0.0 1.8441186065492834 0.0 24 0.0 0.0 0.0 1.9067391448359305 0.0 25 0.0 0.0 0.0 1.9607352976100454 0.0 26 0.0 0.0 0.0 2.016606316799928 0.0 27 0.0 0.0 0.0 2.076352059915731 0.0 28 0.0 0.0 0.0 2.133972954426997 0.0 29 0.0 0.0 0.0 2.2017181275834097 0.0 30 0.0 0.0 0.0 2.2804625170456605 0.0 31 0.0 0.0 0.0 2.353457316166223 0.0 32 0.0 0.0 0.0 2.42407728449348 0.0 33 0.0 0.0 0.0 2.498446985652272 0.0 34 0.0 0.0 0.0 2.5746915532268324 0.0 35 0.0 0.0 0.0 2.682683858775062 0.0 36 0.0 0.0 0.0 2.7648030077856953 0.0 37 0.0 0.0 0.0 2.8475471122682507 0.0 38 0.0 0.0 0.0 2.944290219321873 0.0 39 0.0 0.0 0.0 3.0905297997517676 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAG 30 2.1646701E-6 45.000004 1 ACGTTCA 30 2.1646701E-6 45.000004 18 GACCGTA 20 7.031999E-4 45.000004 16 CGTTGCA 20 7.031999E-4 45.000004 33 ACTCTCG 20 7.031999E-4 45.000004 36 ATATGCG 30 2.1646701E-6 45.000004 1 ATCGTAC 20 7.031999E-4 45.000004 21 ATATACG 30 2.1646701E-6 45.000004 1 GTCGTAC 20 7.031999E-4 45.000004 31 TCGTACT 20 7.031999E-4 45.000004 13 CGGTCTA 80 0.0 45.000004 31 GACGATA 20 7.031999E-4 45.000004 10 CAATCGT 20 7.031999E-4 45.000004 38 TCGACCC 30 2.1646701E-6 45.000004 19 CGTTAGG 115 0.0 43.04348 2 TAGGGTA 295 0.0 41.949154 5 ACGGGTG 70 0.0 41.785717 5 CGTTTTT 2315 0.0 41.306694 1 TTTAGCG 60 3.6379788E-12 41.250004 1 CGTATGG 110 0.0 40.909092 2 >>END_MODULE