FastQCFastQC Report
Thu 26 May 2016
SRR1546792_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546792_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1445329
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60400.41789793188955593No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC52340.36213208203806885No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATCGT302.1658907E-645.00000413
CGTTATG302.1658907E-645.00000417
CCATACT351.2122109E-745.00000427
TATAGTC351.2122109E-745.00000443
ACGCGAG253.891306E-545.01
AACGTTG253.891306E-545.044
AACGTCG406.8175723E-945.023
ATCTCGA253.891306E-545.011
TCGTTAA207.03389E-445.017
CTCGTTA207.03389E-445.016
GTCGATC207.03389E-445.014
ACGTTGT207.03389E-445.015
CGCATTA207.03389E-445.015
TAAACGG1000.045.02
CACGATT253.891306E-545.011
CGCGAGT207.03389E-445.017
TATGCGA207.03389E-445.037
CCGCTAT207.03389E-445.040
ATCGTTC207.03389E-445.02
GTAATCG253.891306E-545.032