SRR1546792_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546792_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1445329
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6040	0.41789793188955593	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5234	0.36213208203806885	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGT	30	2.1658907E-6	45.000004	13
CGTTATG	30	2.1658907E-6	45.000004	17
CCATACT	35	1.2122109E-7	45.000004	27
TATAGTC	35	1.2122109E-7	45.000004	43
ACGCGAG	25	3.891306E-5	45.0	1
AACGTTG	25	3.891306E-5	45.0	44
AACGTCG	40	6.8175723E-9	45.0	23
ATCTCGA	25	3.891306E-5	45.0	11
TCGTTAA	20	7.03389E-4	45.0	17
CTCGTTA	20	7.03389E-4	45.0	16
GTCGATC	20	7.03389E-4	45.0	14
ACGTTGT	20	7.03389E-4	45.0	15
CGCATTA	20	7.03389E-4	45.0	15
TAAACGG	100	0.0	45.0	2
CACGATT	25	3.891306E-5	45.0	11
CGCGAGT	20	7.03389E-4	45.0	17
TATGCGA	20	7.03389E-4	45.0	37
CCGCTAT	20	7.03389E-4	45.0	40
ATCGTTC	20	7.03389E-4	45.0	2
GTAATCG	25	3.891306E-5	45.0	32