SRR1546791_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546791_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1670557
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7719	0.46206145614905686	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5131	0.3071430666538167	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACAAG	145	0.0	45.000004	1
CGGCATA	35	1.2123746E-7	45.000004	2
GTAGGCC	70	0.0	45.000004	1
ATATCTC	35	1.2123746E-7	45.000004	13
TATTCCG	35	1.2123746E-7	45.000004	40
GGAACGT	70	0.0	45.000004	8
GTGCGTC	35	1.2123746E-7	45.000004	41
TGTCGAT	35	1.2123746E-7	45.000004	11
CGATAAT	70	0.0	45.000004	10
CCTTCGT	20	7.034206E-4	45.0	23
CAGGTCG	25	3.8915678E-5	45.0	45
CGGCGTA	20	7.034206E-4	45.0	19
AAGTACG	50	2.1827873E-11	45.0	1
AGCCGAA	40	6.8175723E-9	45.0	37
GCCCATA	40	6.8175723E-9	45.0	12
GCCTTCG	20	7.034206E-4	45.0	22
CGTATTC	40	6.8175723E-9	45.0	22
CGTATAT	20	7.034206E-4	45.0	23
GAATGTA	80	0.0	45.0	28
AGTCAAC	25	3.8915678E-5	45.0	23