##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546791_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1670557 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.652521883419723 31.0 31.0 33.0 30.0 34.0 2 32.01272389987292 33.0 31.0 34.0 30.0 34.0 3 32.06853941529681 33.0 31.0 34.0 30.0 34.0 4 35.747223830135695 37.0 35.0 37.0 35.0 37.0 5 35.663185991259205 37.0 35.0 37.0 33.0 37.0 6 35.73077482540255 37.0 35.0 37.0 33.0 37.0 7 36.09044767703227 37.0 35.0 37.0 35.0 37.0 8 35.99953548427261 37.0 35.0 37.0 35.0 37.0 9 37.85831432270793 39.0 38.0 39.0 35.0 39.0 10 37.502358794102804 39.0 37.0 39.0 35.0 39.0 11 37.06465568071009 39.0 37.0 39.0 33.0 39.0 12 35.443178532669045 35.0 35.0 39.0 32.0 39.0 13 34.839662459886135 35.0 35.0 39.0 30.0 39.0 14 35.5582305781844 35.0 35.0 40.0 31.0 41.0 15 36.00959919356239 35.0 35.0 40.0 31.0 41.0 16 36.27930983498318 35.0 35.0 40.0 32.0 41.0 17 36.23801881647858 35.0 35.0 40.0 32.0 41.0 18 36.192666278373025 36.0 35.0 40.0 32.0 41.0 19 36.14463918321853 36.0 35.0 40.0 32.0 41.0 20 35.977438064070846 35.0 35.0 40.0 32.0 41.0 21 35.7398209100318 35.0 35.0 40.0 31.0 41.0 22 35.65443681358972 35.0 35.0 40.0 31.0 41.0 23 35.672463136546675 35.0 35.0 40.0 31.0 41.0 24 35.6061481290372 35.0 35.0 40.0 31.0 41.0 25 35.48501368106566 35.0 35.0 40.0 31.0 41.0 26 35.40787354157924 35.0 34.0 40.0 31.0 41.0 27 35.286769023744775 35.0 34.0 40.0 31.0 41.0 28 35.406825986781655 35.0 35.0 40.0 31.0 41.0 29 35.43999276887888 35.0 35.0 40.0 31.0 41.0 30 35.51423567109653 36.0 35.0 40.0 31.0 41.0 31 35.264543502556336 35.0 34.0 40.0 31.0 41.0 32 34.99770196407545 35.0 34.0 40.0 30.0 41.0 33 34.92428752805202 35.0 34.0 40.0 30.0 41.0 34 34.81374954581017 35.0 34.0 40.0 29.0 41.0 35 34.75524211385783 35.0 34.0 40.0 29.0 41.0 36 34.55307122115558 35.0 34.0 39.0 28.0 41.0 37 34.25253014413755 35.0 34.0 39.0 27.0 41.0 38 34.40339300005926 35.0 34.0 39.0 28.0 41.0 39 34.40236280474117 35.0 34.0 39.0 27.0 41.0 40 34.24836985508426 35.0 34.0 39.0 27.0 41.0 41 34.26785557152495 35.0 34.0 39.0 27.0 41.0 42 34.274403686914006 35.0 34.0 39.0 27.0 41.0 43 34.14324384022814 35.0 34.0 39.0 27.0 41.0 44 34.04675566293159 35.0 34.0 39.0 27.0 41.0 45 34.00870847268306 35.0 34.0 39.0 27.0 41.0 46 33.887839804328735 35.0 34.0 38.0 27.0 41.0 47 33.80082271960789 35.0 33.0 38.0 26.0 41.0 48 33.73961918090792 35.0 34.0 38.0 26.0 41.0 49 33.88250804971037 35.0 34.0 38.0 27.0 41.0 50 33.696084599328245 35.0 34.0 38.0 26.0 40.0 51 33.05962622047616 35.0 33.0 37.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 6.0 13 5.0 14 15.0 15 46.0 16 115.0 17 305.0 18 695.0 19 1472.0 20 2604.0 21 4195.0 22 6327.0 23 9427.0 24 13502.0 25 19311.0 26 25140.0 27 29844.0 28 32446.0 29 35994.0 30 42677.0 31 52773.0 32 68419.0 33 94877.0 34 204482.0 35 426401.0 36 83367.0 37 93603.0 38 145073.0 39 277364.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.55621568135658 23.71346802294085 31.695296838120456 14.035019457582113 2 28.29822628021672 26.568743239530292 32.17633400117445 12.956696479078536 3 28.245788680062994 25.12281831748333 33.57461014499954 13.056782857454131 4 26.103868350496274 27.329447603404134 31.19336843938878 15.373315606710817 5 22.474899090542856 32.4451664923735 31.32260677127449 13.757327645809154 6 21.02693891917486 39.48910453220093 27.654069870109193 11.82988667851501 7 87.53493595249967 5.287218574403627 5.714261770176055 1.4635837029206427 8 90.5356117749948 2.888976550934808 5.133916412310385 1.4414952617599999 9 89.1193775489253 3.386834451024419 5.8411655513699925 1.6526224486802905 10 69.24684401669623 13.676097253790203 9.029204031948627 8.047854697564944 11 64.97102463429863 14.755258276131853 12.446746803611012 7.826970285958515 12 54.946763265186405 19.420468741862745 16.59254967055898 9.040218322391873 13 19.908808858362807 53.89334216072843 17.405811355134844 8.792037625773919 14 11.336338718164061 54.34001952642142 25.05469732550281 9.2689444299117 15 9.123543824006006 20.293710421134985 61.05622256528811 9.526523189570904 16 10.891696601792097 12.965974821571487 58.179337789731214 17.962990786905205 17 12.482782688648157 13.541591217779459 27.322264370506367 46.65336172306602 18 22.004217754916475 20.491907788839292 36.63275183067684 20.871122625567402 19 32.7919969207875 23.01172602910287 22.865427519084953 21.330849531024683 20 36.110830100379694 21.88497608881349 21.788601047435076 20.21559276337174 21 21.17018455521123 28.385801861295363 27.687831064728712 22.7561825187647 22 22.703505477514383 23.794279393040764 24.296806394513926 29.205408734930927 23 18.1240747846377 32.879213340221256 21.947290634201646 27.0494212409394 24 19.993271705185755 21.657507047050775 43.03139611518793 15.31782513257554 25 13.918531364089942 23.660910702238837 40.97112519955919 21.449432734112037 26 13.058997687597609 39.826297456477086 26.907432670660146 20.207272185265154 27 15.848785764269044 37.37950875067418 30.603984180126748 16.167721304930033 28 10.992680884279913 28.87294477231247 46.17424008878476 13.960134254622858 29 10.785265034356804 23.34718300542873 45.24778262579487 20.619769334419598 30 16.494079519585384 31.487402106004165 33.61298058072846 18.405537793681987 31 33.983814979075845 25.652222582048985 21.99619647818063 18.367765960694545 32 34.54123385194279 27.36889552406772 24.333800043937444 13.756070580052043 33 29.730323478935468 29.02241587686023 23.260804629833043 17.986456014371257 34 17.952994121122476 29.340633094231443 28.301339014472422 24.405033770173663 35 18.474077807581544 26.3512708635503 32.42906407862767 22.74558725024049 36 34.823175743180265 21.337374300906824 26.906355185725477 16.93309477018743 37 19.418852514460745 31.957784140259804 30.616016095230513 18.007347250048937 38 18.867299948460303 35.52030849590885 21.34964565710718 24.262745898523665 39 18.961998902162573 32.85963903057483 27.693577651046926 20.48478441621567 40 24.291538690388894 25.820250371582652 22.779109003763416 27.10910193426504 41 15.505367371481487 22.228514202149345 27.52267656835415 34.743441858015025 42 24.127581399497295 24.403417542771663 22.218876698011503 29.250124359719543 43 24.384322115318426 26.489488236558227 23.13479875275133 25.991390895372025 44 19.364020503341102 33.810878647062026 27.06438630947642 19.76071454012045 45 15.640651591056157 43.844897240860384 18.85371166622869 21.66073950185477 46 23.23500485167522 35.78237677612916 24.099447070647695 16.88317130154793 47 23.166524698049813 27.659756596153258 24.844587763243037 24.329130942553892 48 25.73195646721423 20.772233452674765 31.190016264036487 22.30579381607452 49 20.982163434112096 20.469160884663022 33.78262459766413 24.766051083560754 50 18.781999057799283 36.30711193931126 24.385160159156495 20.525728843732956 51 17.134883754340617 39.052124530919926 20.36332791996921 23.44966379477025 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1137.0 1 1424.0 2 1711.0 3 5159.0 4 8607.0 5 6536.5 6 4466.0 7 5121.0 8 5776.0 9 6442.0 10 7108.0 11 7431.5 12 7755.0 13 7427.5 14 7100.0 15 6545.0 16 5990.0 17 5515.5 18 5041.0 19 5157.5 20 5274.0 21 4794.0 22 4314.0 23 4637.0 24 4960.0 25 4648.5 26 5638.0 27 6939.0 28 8046.5 29 9154.0 30 12304.5 31 15455.0 32 18118.5 33 20782.0 34 20746.0 35 20710.0 36 25518.0 37 30326.0 38 43178.0 39 56030.0 40 98944.5 41 141859.0 42 188350.0 43 234841.0 44 231164.5 45 227488.0 46 201229.0 47 174970.0 48 157600.0 49 140230.0 50 137175.5 51 134121.0 52 118806.5 53 103492.0 54 91336.0 55 79180.0 56 68843.5 57 58507.0 58 52429.0 59 46351.0 60 39866.0 61 33381.0 62 28716.5 63 24052.0 64 19232.5 65 14413.0 66 12160.0 67 9907.0 68 7893.5 69 5880.0 70 4792.5 71 3705.0 72 3407.5 73 3110.0 74 2111.0 75 827.5 76 543.0 77 397.0 78 251.0 79 184.0 80 117.0 81 68.0 82 19.0 83 12.0 84 5.0 85 23.5 86 42.0 87 21.0 88 0.0 89 1.5 90 3.0 91 3.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1670557.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.735406026101279 #Duplication Level Percentage of deduplicated Percentage of total 1 83.15835633345725 13.085305013701607 2 7.7010453625818185 2.423581512112985 3 2.138173104866517 1.0093506587749281 4 0.9078168151139172 0.5713946473255841 5 0.540867381487232 0.42553839269879046 6 0.3479449961362348 0.3285033473372337 7 0.2363050740874222 0.26028494007554726 8 0.19288146945273424 0.24280545893998595 9 0.14939253440917952 0.21156769675770715 >10 1.5325142095583286 5.741448439070469 >50 0.8804258819725994 10.401843515619317 >100 2.198958422232171 63.10507974430005 >500 0.01455249391236895 1.4189508977107996 >1k 0.0 0.0 >5k 7.659207322299447E-4 0.7743457355749681 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7719 0.46206145614905686 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5131 0.3071430666538167 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023884249385085335 0.0 2 0.0 0.0 0.0 0.08607907422494414 0.0 3 0.0 0.0 0.0 0.12235440035868277 0.0 4 0.0 0.0 0.0 0.2153174061106565 0.0 5 0.0 0.0 0.0 0.3614961955802765 0.0 6 0.0 0.0 0.0 0.5493377358569627 0.0 7 0.0 0.0 0.0 0.6760020759543075 0.0 8 0.0 0.0 0.0 1.0222339016268227 0.0 9 0.0 0.0 0.0 1.15506384996142 0.0 10 0.0 0.0 0.0 1.3712192999101498 0.0 11 0.0 0.0 0.0 1.5566065689467645 0.0 12 0.0 0.0 0.0 1.7242751968355465 0.0 13 0.0 0.0 0.0 1.7932342326541386 0.0 14 0.0 0.0 0.0 1.8101746902380464 0.0 15 0.0 0.0 0.0 1.8434570026643808 0.0 16 0.0 0.0 0.0 1.9204373152188163 0.0 17 0.0 0.0 0.0 2.011245351101459 0.0 18 0.0 0.0 0.0 2.175082921444764 0.0 19 0.0 0.0 0.0 2.2336861298357373 0.0 20 0.0 0.0 0.0 2.292768220419896 0.0 21 0.0 0.0 0.0 2.3929743193437876 0.0 22 0.0 0.0 0.0 2.4811485031639147 0.0 23 0.0 0.0 0.0 2.595840788431643 0.0 24 0.0 0.0 0.0 2.6706062708425993 0.0 25 0.0 0.0 0.0 2.7287904573145365 0.0 26 0.0 0.0 0.0 2.7964325671018706 0.0 27 0.0 0.0 0.0 2.8517434604147 0.0 28 0.0 0.0 0.0 2.9094487646934524 0.0 29 0.0 0.0 0.0 2.976312690916862 0.0 30 0.0 0.0 0.0 3.080948450127712 0.0 31 5.986027414808354E-5 0.0 0.0 3.1869011353698196 0.0 32 5.986027414808354E-5 0.0 0.0 3.265377954777957 0.0 33 5.986027414808354E-5 0.0 0.0 3.3437350536377988 0.0 34 5.986027414808354E-5 0.0 0.0 3.430592311426668 0.0 35 5.986027414808354E-5 0.0 0.0 3.5613870104402303 0.0 36 5.986027414808354E-5 0.0 0.0 3.6538112737248714 0.0 37 5.986027414808354E-5 0.0 0.0 3.7434819643987005 0.0 38 5.986027414808354E-5 0.0 0.0 3.8408147701634845 0.0 39 5.986027414808354E-5 0.0 0.0 3.9370102307194546 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACAAG 145 0.0 45.000004 1 CGGCATA 35 1.2123746E-7 45.000004 2 GTAGGCC 70 0.0 45.000004 1 ATATCTC 35 1.2123746E-7 45.000004 13 TATTCCG 35 1.2123746E-7 45.000004 40 GGAACGT 70 0.0 45.000004 8 GTGCGTC 35 1.2123746E-7 45.000004 41 TGTCGAT 35 1.2123746E-7 45.000004 11 CGATAAT 70 0.0 45.000004 10 CCTTCGT 20 7.034206E-4 45.0 23 CAGGTCG 25 3.8915678E-5 45.0 45 CGGCGTA 20 7.034206E-4 45.0 19 AAGTACG 50 2.1827873E-11 45.0 1 AGCCGAA 40 6.8175723E-9 45.0 37 GCCCATA 40 6.8175723E-9 45.0 12 GCCTTCG 20 7.034206E-4 45.0 22 CGTATTC 40 6.8175723E-9 45.0 22 CGTATAT 20 7.034206E-4 45.0 23 GAATGTA 80 0.0 45.0 28 AGTCAAC 25 3.8915678E-5 45.0 23 >>END_MODULE