FastQCFastQC Report
Thu 26 May 2016
SRR1546790_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546790_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1902975
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73040.3838200712042985No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC65470.34404025276212247No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT31100.16342831618912493No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATCCG302.1662545E-645.00000439
CGTTGCC302.1662545E-645.00000439
TAAGTCG302.1662545E-645.00000414
AGGCGTA302.1662545E-645.00000419
TCTAGCG1350.045.0000041
AACGGTC302.1662545E-645.00000417
ACCGTAC302.1662545E-645.00000412
ATCGGTC302.1662545E-645.00000412
CGTGGTA207.034455E-445.044
CTAGACC453.8562575E-1045.039
GTACCGA253.8917744E-545.08
GTCGACG207.034455E-445.01
ACGCACT253.8917744E-545.033
GTTTACG207.034455E-445.01
ATTACGC253.8917744E-545.011
CAATTCG253.8917744E-545.01
ATCCGAT351.2124838E-745.015
CCCGTCG253.8917744E-545.034
TAACCGC207.034455E-445.027
CTACGTC253.8917744E-545.024