SRR1546790_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546790_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1902975
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7304	0.3838200712042985	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6547	0.34404025276212247	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3110	0.16342831618912493	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCCG	30	2.1662545E-6	45.000004	39
CGTTGCC	30	2.1662545E-6	45.000004	39
TAAGTCG	30	2.1662545E-6	45.000004	14
AGGCGTA	30	2.1662545E-6	45.000004	19
TCTAGCG	135	0.0	45.000004	1
AACGGTC	30	2.1662545E-6	45.000004	17
ACCGTAC	30	2.1662545E-6	45.000004	12
ATCGGTC	30	2.1662545E-6	45.000004	12
CGTGGTA	20	7.034455E-4	45.0	44
CTAGACC	45	3.8562575E-10	45.0	39
GTACCGA	25	3.8917744E-5	45.0	8
GTCGACG	20	7.034455E-4	45.0	1
ACGCACT	25	3.8917744E-5	45.0	33
GTTTACG	20	7.034455E-4	45.0	1
ATTACGC	25	3.8917744E-5	45.0	11
CAATTCG	25	3.8917744E-5	45.0	1
ATCCGAT	35	1.2124838E-7	45.0	15
CCCGTCG	25	3.8917744E-5	45.0	34
TAACCGC	20	7.034455E-4	45.0	27
CTACGTC	25	3.8917744E-5	45.0	24