SRR1546789_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546789_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3769376
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	21360	0.5666720433302489	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20380	0.5406730450875689	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG	6986	0.18533571604424712	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4245	0.11261810973487388	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	4155	0.1102304466309543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTAC	20	7.035335E-4	45.000004	29
ACTATCG	40	6.8230293E-9	45.000004	18
TCGTTAA	30	2.1668238E-6	45.000004	34
CACATCG	30	2.1668238E-6	45.000004	17
CGCGACT	20	7.035335E-4	45.000004	25
ATCGTCC	30	2.1668238E-6	45.000004	41
ACTAGTC	20	7.035335E-4	45.000004	17
CTAACCG	80	0.0	45.000004	1
CTAGTCC	20	7.035335E-4	45.000004	18
GTCCGCG	20	7.035335E-4	45.000004	15
ACTAAGA	40	6.8230293E-9	45.000004	9
CTACCGT	30	2.1668238E-6	45.000004	43
GTATCGA	60	0.0	45.000004	38
ACCACGT	20	7.035335E-4	45.000004	32
ATGCGCA	60	0.0	45.000004	20
ACCGTAG	20	7.035335E-4	45.000004	1
ACGTAAT	30	2.1668238E-6	45.000004	45
ATACGTG	20	7.035335E-4	45.000004	24
ATCGGCC	30	2.1668238E-6	45.000004	33
CACAACG	40	6.8230293E-9	45.000004	12