SRR1546788_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546788_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3261624
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35360	1.0841225107492465	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5110	0.15667041939843465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	40	6.8212103E-9	45.0	1
CTACGAT	20	7.0351956E-4	45.0	28
TAGTCGA	25	3.8923885E-5	45.0	1
CGTTTTT	22060	0.0	43.072304	1
CGGTCTA	300	0.0	42.0	31
CGTAAGG	515	0.0	41.06796	2
GCGATAA	335	0.0	40.298508	9
TAATGCG	190	0.0	40.263157	1
CTTAACG	160	0.0	39.375	1
TACGATT	40	3.4608274E-7	39.375	3
ATTACGT	35	6.251821E-6	38.571426	25
GCGTAAG	260	0.0	38.076927	1
GTTTTTT	26230	0.0	38.01754	2
TAGGGTA	1370	0.0	37.937958	5
CGCATCG	185	0.0	37.7027	21
CCATACG	30	1.14038194E-4	37.500004	1
CGTACCA	30	1.14038194E-4	37.500004	24
TACGTTA	30	1.14038194E-4	37.500004	33
AGGGCGA	2045	0.0	37.298286	6
TCACGAC	345	0.0	37.173912	25