##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546787_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2792670 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.581375529511185 31.0 31.0 33.0 30.0 34.0 2 31.951394185492735 31.0 31.0 34.0 30.0 34.0 3 31.93544600686798 33.0 31.0 34.0 30.0 34.0 4 35.69349726247641 37.0 35.0 37.0 33.0 37.0 5 35.64141126592114 37.0 35.0 37.0 33.0 37.0 6 35.69993876827552 37.0 35.0 37.0 33.0 37.0 7 36.05354553169548 37.0 35.0 37.0 35.0 37.0 8 35.94516358896683 37.0 35.0 37.0 35.0 37.0 9 37.73121027547114 39.0 38.0 39.0 35.0 39.0 10 37.38841502934468 39.0 37.0 39.0 34.0 39.0 11 37.0744284143848 39.0 37.0 39.0 33.0 39.0 12 36.223611454271364 38.0 35.0 39.0 32.0 39.0 13 35.930530281057194 38.0 35.0 39.0 32.0 39.0 14 36.92313950448854 39.0 35.0 41.0 32.0 41.0 15 37.15933568950145 39.0 35.0 41.0 32.0 41.0 16 37.277574865630385 39.0 35.0 41.0 33.0 41.0 17 37.178536311128774 38.0 35.0 41.0 33.0 41.0 18 37.034673627746926 38.0 35.0 41.0 32.0 41.0 19 36.90893481865025 37.0 35.0 41.0 32.0 41.0 20 36.696745408515866 37.0 35.0 41.0 32.0 41.0 21 36.53675765486076 37.0 35.0 40.0 32.0 41.0 22 36.47223624703241 37.0 35.0 40.0 32.0 41.0 23 36.40263690303544 37.0 35.0 40.0 32.0 41.0 24 36.331430852911375 37.0 35.0 40.0 32.0 41.0 25 36.22616743116802 37.0 35.0 40.0 31.0 41.0 26 36.15053443478821 37.0 35.0 40.0 31.0 41.0 27 36.048445752631 36.0 35.0 40.0 31.0 41.0 28 36.05778018885153 36.0 35.0 40.0 31.0 41.0 29 35.97032230804212 36.0 35.0 40.0 31.0 41.0 30 35.94238237958656 36.0 35.0 40.0 31.0 41.0 31 35.713814736435026 36.0 35.0 40.0 30.0 41.0 32 35.391253173486305 36.0 34.0 40.0 29.0 41.0 33 35.17596422062041 36.0 34.0 40.0 28.0 41.0 34 34.88701529360791 36.0 34.0 40.0 26.0 41.0 35 34.66831240354213 36.0 34.0 40.0 24.0 41.0 36 34.4849767426871 36.0 34.0 40.0 23.0 41.0 37 34.15254899433159 36.0 33.0 40.0 23.0 41.0 38 34.25731396835287 35.0 34.0 40.0 23.0 41.0 39 34.16432589600633 36.0 34.0 40.0 23.0 41.0 40 34.01471996333258 36.0 33.0 40.0 22.0 41.0 41 33.97550910060981 36.0 34.0 40.0 22.0 41.0 42 33.97767047305983 35.0 33.0 40.0 22.0 41.0 43 33.851066183974474 35.0 33.0 40.0 22.0 41.0 44 33.724324392069235 35.0 33.0 40.0 21.0 41.0 45 33.70385330167904 35.0 33.0 40.0 22.0 41.0 46 33.53438537313753 35.0 33.0 40.0 20.0 41.0 47 33.429381559582765 35.0 33.0 40.0 20.0 41.0 48 33.297690382322294 35.0 33.0 40.0 20.0 41.0 49 33.3603737641755 35.0 33.0 39.0 20.0 41.0 50 33.20505072206885 35.0 33.0 39.0 20.0 41.0 51 32.62358567249263 35.0 32.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 7.0 12 5.0 13 13.0 14 30.0 15 86.0 16 218.0 17 609.0 18 1478.0 19 3091.0 20 5349.0 21 8844.0 22 13467.0 23 19850.0 24 29207.0 25 43448.0 26 58905.0 27 63729.0 28 62212.0 29 62398.0 30 68618.0 31 80504.0 32 100050.0 33 131867.0 34 248232.0 35 462710.0 36 176593.0 37 216719.0 38 324397.0 39 609797.0 40 232.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.24505938761114 23.407563371254035 29.42080517927288 17.926572061861947 2 33.1108580677273 25.224462611049642 29.147948021069443 12.516731300153616 3 27.1906455112849 23.74326361510669 35.84358338077897 13.222507492829443 4 24.418388137517145 26.101257935953765 35.640730913426935 13.839623013102157 5 22.84254852882725 30.38543759198187 33.85147546971179 12.920538409479102 6 20.448961030125293 38.13912850426295 30.582560775172148 10.829349690439615 7 82.45478341515468 4.904124010355681 10.860538481095153 1.7805540933944934 8 84.23716371787573 3.8162761801430176 10.360407781800212 1.5861523201810452 9 80.66925200614466 5.381767269315745 11.413987331120397 2.534993393419201 10 51.064894885539644 21.732714570643864 17.61658198068515 9.58580856313134 11 45.407907128303734 20.303866908728924 21.90853197835763 12.37969398460971 12 39.27438616091411 21.378931273655677 25.664901330984325 13.68178123444589 13 20.93054317194656 39.11518367726942 25.886696244096154 14.067576906687865 14 14.926396602534492 40.68404072088718 30.108462510787167 14.28110016579116 15 14.03005009542839 23.30801705894359 48.77912535315666 13.882807492471363 16 15.328162654377353 19.65054947415914 47.26559170972582 17.755696161737692 17 16.37046267550409 20.090952386067812 30.819144403026495 32.7194405354016 18 20.953890004905702 24.918411412734052 34.45623722101072 19.671461361349532 19 27.90970648161079 26.098894606237046 27.105923721742993 18.885475190409178 20 29.69008153487523 24.59767892375397 27.320843493860714 18.39139604751009 21 21.8387779436883 27.741802647645443 30.247290227631623 20.172129181034638 22 21.310502135948752 25.656987757235903 28.465554469378766 24.566955637436575 23 19.472511968832695 30.00519216377159 27.70166185048717 22.82063401690855 24 19.973072364439766 24.983367171917912 38.25675786970892 16.786802593933402 25 17.367250695570906 26.622049866257026 35.98459538721009 20.026104050961983 26 16.571560549581584 34.60057937386086 29.468358237815423 19.359501838742137 27 18.301768558404678 32.50538015590815 31.97259253689122 17.220258748795956 28 15.43404698729173 29.411495092510037 38.80272284229787 16.35173507790036 29 15.974067827562871 26.536110603830743 38.20719956170976 19.282622006896627 30 18.404143704769986 29.42990041787966 34.10761027976811 18.058345597582242 31 28.00749820064669 26.674974128701205 26.845205484357265 18.472322186294836 32 28.36636623732843 27.61264309782395 27.82240651419609 16.198584150651527 33 25.64266454683153 28.43694385659602 26.705912263174667 19.214479333397787 34 18.716139035403394 29.529052841903987 29.729506171513282 22.025301951179337 35 20.054499815588667 27.138795489621042 31.27644870321234 21.530255991577953 36 27.981608997840773 26.986862035256582 27.16085323364379 17.870675733258853 37 20.403842917351493 32.72799865361822 29.5327052605571 17.33545316847318 38 20.827881561373164 33.61027260650202 24.53061049103546 21.031235341089353 39 21.338754668471392 32.00614465726348 27.20958795704469 19.44551271722044 40 23.311168165232555 27.657617978493697 26.018648819946506 23.012565036327242 41 18.076929963081927 26.19274744241174 27.87909061937143 27.851231975134905 42 22.313986256879616 28.067870532501153 24.72576423279514 24.89237897782409 43 22.614666251293563 28.061460895845197 25.87144202501549 23.452430827845753 44 20.11082584050389 32.4823555951831 27.12013950806934 20.286679056243667 45 17.55520702410238 37.052426530882634 23.299852829013094 22.09251361600189 46 21.807696577110793 33.624774857036456 25.814936959970208 18.752591605882543 47 22.134086734200604 28.801004057049344 27.350349307293737 21.71455990145631 48 23.90311064321957 25.10192754604017 29.680234327722214 21.314727483018046 49 20.786773947512597 25.951472963149964 30.794042976792817 22.467710112544626 50 19.501588085953586 33.11991749830807 27.15458682909187 20.22390758664647 51 18.52857659515804 33.881196131300875 24.977279807496053 22.61294746604504 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2883.0 1 3670.5 2 4458.0 3 27551.0 4 50644.0 5 35191.5 6 19739.0 7 20705.0 8 21671.0 9 23345.5 10 25020.0 11 26013.0 12 27006.0 13 26823.5 14 26641.0 15 25721.5 16 24802.0 17 23064.5 18 21327.0 19 20397.5 20 19468.0 21 17981.0 22 16494.0 23 16572.0 24 16650.0 25 18186.0 26 21814.5 27 23907.0 28 27663.5 29 31420.0 30 36430.0 31 41440.0 32 47233.0 33 53026.0 34 55847.0 35 58668.0 36 67174.5 37 75681.0 38 92528.0 39 109375.0 40 146700.5 41 184026.0 42 224285.0 43 264544.0 44 263640.0 45 262736.0 46 255822.5 47 248909.0 48 230476.5 49 212044.0 50 203480.0 51 194916.0 52 178076.0 53 161236.0 54 143060.5 55 124885.0 56 119618.5 57 114352.0 58 102917.5 59 91483.0 60 83888.5 61 76294.0 62 66850.0 63 57406.0 64 46293.0 65 35180.0 66 29956.0 67 24732.0 68 20906.5 69 17081.0 70 14888.5 71 12696.0 72 11194.0 73 9692.0 74 7418.5 75 3878.0 76 2611.0 77 2110.0 78 1609.0 79 1147.5 80 686.0 81 466.0 82 246.0 83 157.0 84 68.0 85 44.5 86 21.0 87 21.0 88 21.0 89 12.0 90 3.0 91 2.5 92 2.0 93 2.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2792670.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.999672437909105 #Duplication Level Percentage of deduplicated Percentage of total 1 82.04780365682845 17.229770010432784 2 6.859801535330477 2.8810717046201195 3 2.382036125792812 1.5006593513074529 4 1.2319219356762856 1.034798284731077 5 0.8027342005916451 0.8428577633565684 6 0.5723531598736983 0.7211537325689932 7 0.41891003650171676 0.6157881483242019 8 0.3278380456854755 0.5507593257663411 9 0.2797569038480527 0.5287323008747464 >10 2.822466939655406 13.726328407722676 >50 1.026729491552832 15.820305158418984 >100 1.2184838466717642 41.72346686325223 >500 0.007953766256788952 1.0308075896080455 >1k 8.645398105205382E-4 0.2867045942986765 >5k 1.7290796210410765E-4 0.22875366566383762 >10k+ 1.7290796210410765E-4 1.2780430990532947 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35198 1.2603708995334215 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6300 0.2255905638689856 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.5808026010950094E-5 0.0 0.0 0.019372142071924 0.0 2 3.5808026010950094E-5 0.0 0.0 0.06638808022430147 0.0 3 3.5808026010950094E-5 0.0 0.0 0.10660049343459843 0.0 4 3.5808026010950094E-5 0.0 0.0 0.1719143328785714 0.0 5 3.5808026010950094E-5 0.0 0.0 0.3251726842054378 0.0 6 3.5808026010950094E-5 0.0 0.0 0.5658384270250334 0.0 7 3.5808026010950094E-5 0.0 0.0 0.7546541481807733 0.0 8 3.5808026010950094E-5 0.0 0.0 1.1073990124146427 0.0 9 3.5808026010950094E-5 0.0 0.0 1.3056322444112622 0.0 10 3.5808026010950094E-5 0.0 0.0 1.5572194351641977 0.0 11 3.5808026010950094E-5 0.0 0.0 1.7713514307096794 0.0 12 3.5808026010950094E-5 0.0 0.0 1.9624946735561308 0.0 13 3.5808026010950094E-5 0.0 0.0 2.049937873074871 0.0 14 3.5808026010950094E-5 0.0 0.0 2.092048111663748 0.0 15 3.5808026010950094E-5 0.0 0.0 2.128894570429016 0.0 16 3.5808026010950094E-5 0.0 0.0 2.199221533514522 0.0 17 3.5808026010950094E-5 0.0 0.0 2.284086555160474 0.0 18 3.5808026010950094E-5 0.0 0.0 2.4120286320975985 3.5808026010950094E-5 19 3.5808026010950094E-5 0.0 0.0 2.481245546376765 3.5808026010950094E-5 20 3.5808026010950094E-5 0.0 0.0 2.5540074552310155 3.5808026010950094E-5 21 3.5808026010950094E-5 0.0 0.0 2.651262053876756 3.5808026010950094E-5 22 3.5808026010950094E-5 0.0 0.0 2.756072146010807 3.5808026010950094E-5 23 3.5808026010950094E-5 0.0 0.0 2.8752770646012595 3.5808026010950094E-5 24 3.5808026010950094E-5 0.0 0.0 2.9635080406922407 3.5808026010950094E-5 25 3.5808026010950094E-5 0.0 0.0 3.0362699495464915 3.5808026010950094E-5 26 3.5808026010950094E-5 0.0 0.0 3.105844944085767 3.5808026010950094E-5 27 3.5808026010950094E-5 0.0 0.0 3.1802182141105106 3.5808026010950094E-5 28 3.5808026010950094E-5 0.0 0.0 3.2612875849993017 3.5808026010950094E-5 29 3.5808026010950094E-5 0.0 0.0 3.352025122911049 3.5808026010950094E-5 30 3.5808026010950094E-5 0.0 0.0 3.4709077692674035 3.5808026010950094E-5 31 3.5808026010950094E-5 0.0 0.0 3.5806235609649546 3.5808026010950094E-5 32 7.161605202190019E-5 0.0 0.0 3.677269423168509 3.5808026010950094E-5 33 7.161605202190019E-5 0.0 0.0 3.7796803775598264 3.5808026010950094E-5 34 7.161605202190019E-5 0.0 0.0 3.88950359333541 3.5808026010950094E-5 35 7.161605202190019E-5 0.0 0.0 4.016335621466196 3.5808026010950094E-5 36 7.161605202190019E-5 0.0 0.0 4.1287012070885565 3.5808026010950094E-5 37 7.161605202190019E-5 0.0 0.0 4.245005675572123 3.5808026010950094E-5 38 1.0742407803285029E-4 0.0 0.0 4.360486559457437 3.5808026010950094E-5 39 1.0742407803285029E-4 0.0 0.0 4.487211163510189 3.5808026010950094E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAG 40 6.8212103E-9 45.000004 1 TATATCG 20 7.035021E-4 45.000004 32 ACTACGC 55 1.8189894E-12 45.000004 20 ATACGAT 30 2.166622E-6 45.000004 26 CGCGAAC 25 3.892245E-5 44.999996 27 CCCGTCG 25 3.892245E-5 44.999996 18 GTCGTAA 25 3.892245E-5 44.999996 32 CGTTTTT 21520 0.0 44.090378 1 GCGATAC 105 0.0 42.857143 9 CTAACGG 205 0.0 41.707317 2 TAACGGG 985 0.0 41.34518 3 TTACGCG 55 6.184564E-11 40.909092 1 TCGACAC 55 6.184564E-11 40.909092 34 ACGGTCT 420 0.0 40.714287 30 TGTAGCG 150 0.0 40.500004 1 TACTCGC 45 1.9299478E-8 40.0 45 TCGTAAG 135 0.0 40.0 1 TATCGTG 45 1.9299478E-8 40.0 1 TAGGGAC 1710 0.0 39.473686 5 TAGGGCG 1050 0.0 39.214287 5 >>END_MODULE