##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546783_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2824608 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.459315416510893 31.0 31.0 33.0 30.0 34.0 2 31.84988182430978 31.0 31.0 34.0 30.0 34.0 3 31.934051379872887 31.0 31.0 34.0 30.0 34.0 4 35.661939285026456 37.0 35.0 37.0 33.0 37.0 5 35.55590510258415 37.0 35.0 37.0 33.0 37.0 6 35.60102322162934 37.0 35.0 37.0 33.0 37.0 7 36.01693119894867 37.0 35.0 37.0 35.0 37.0 8 21.92316632962875 35.0 0.0 37.0 0.0 37.0 9 29.855596245567526 37.0 18.0 39.0 17.0 39.0 10 34.28840462110141 35.0 32.0 39.0 27.0 39.0 11 35.89696198552153 37.0 35.0 39.0 32.0 39.0 12 36.49003755565374 37.0 35.0 39.0 32.0 39.0 13 36.668657739410214 39.0 35.0 39.0 33.0 39.0 14 37.82939508774315 40.0 36.0 41.0 33.0 41.0 15 38.064703491599545 40.0 37.0 41.0 33.0 41.0 16 38.09010383033681 40.0 37.0 41.0 33.0 41.0 17 38.041321131994245 40.0 36.0 41.0 33.0 41.0 18 37.94596347528577 40.0 36.0 41.0 33.0 41.0 19 37.91952547043696 40.0 36.0 41.0 33.0 41.0 20 37.763405399970544 40.0 36.0 41.0 33.0 41.0 21 37.6665834692814 39.0 35.0 41.0 33.0 41.0 22 37.632912956417314 39.0 35.0 41.0 33.0 41.0 23 37.46023023371739 39.0 35.0 41.0 33.0 41.0 24 37.29642697322956 39.0 35.0 41.0 32.0 41.0 25 37.156327532882436 39.0 35.0 41.0 32.0 41.0 26 37.09941450282658 39.0 35.0 41.0 32.0 41.0 27 36.985614641040456 39.0 35.0 41.0 32.0 41.0 28 36.97139496878859 39.0 35.0 41.0 32.0 41.0 29 36.86327483318039 39.0 35.0 41.0 31.0 41.0 30 36.71531023065855 39.0 35.0 41.0 31.0 41.0 31 36.55786325040501 39.0 35.0 41.0 31.0 41.0 32 36.136439817489716 39.0 35.0 41.0 30.0 41.0 33 35.817428825521986 39.0 35.0 41.0 27.0 41.0 34 35.54892962138463 39.0 35.0 41.0 25.0 41.0 35 35.29645919008939 39.0 35.0 41.0 24.0 41.0 36 35.13756457533222 39.0 35.0 41.0 23.0 41.0 37 35.11201200308149 39.0 35.0 41.0 23.0 41.0 38 35.01899555619753 39.0 35.0 40.0 23.0 41.0 39 34.93446913695635 38.0 35.0 40.0 22.0 41.0 40 34.89702854342974 38.0 34.0 40.0 22.0 41.0 41 34.884579382342615 38.0 34.0 40.0 22.0 41.0 42 34.63407488755962 38.0 34.0 40.0 20.0 41.0 43 34.672138222365724 38.0 34.0 40.0 21.0 41.0 44 34.4721904774043 38.0 34.0 40.0 19.0 41.0 45 34.27152227848962 38.0 34.0 40.0 18.0 41.0 46 34.3456461923212 38.0 34.0 40.0 20.0 41.0 47 34.22975577496063 38.0 33.0 40.0 19.0 41.0 48 34.23152522403109 38.0 34.0 40.0 19.0 41.0 49 34.15770294497502 38.0 33.0 40.0 18.0 41.0 50 33.70025469020834 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 6.0 13 4.0 14 10.0 15 58.0 16 149.0 17 429.0 18 1135.0 19 2441.0 20 4653.0 21 8225.0 22 12636.0 23 19189.0 24 28942.0 25 44051.0 26 59198.0 27 64905.0 28 62007.0 29 61828.0 30 67376.0 31 81328.0 32 102640.0 33 132115.0 34 192097.0 35 278148.0 36 261770.0 37 389892.0 38 464889.0 39 484485.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.23215964834766 23.363489730256376 28.504946527093317 17.899404094302643 2 34.69511521598749 24.046770383713422 28.333843138587728 12.92427126171136 3 26.040108928389355 24.01427029874588 36.92908892136537 13.016531851499394 4 23.261387066807146 26.55572029817943 36.59852977829136 13.584362856722066 5 21.75066416295642 30.618337128550227 34.81484864448448 12.816150064008882 6 19.00777028175237 38.87229661602601 31.62187461056543 10.498058491656186 7 83.13330557726948 3.1061301249589324 12.062240140932829 1.6983241568387542 8 51.234826213053275 40.006365485051376 6.9942094619855215 1.7645988399098211 9 78.05631790322764 5.073907600629893 13.889891977931097 2.9798825182113764 10 37.172166898911286 33.64997904133954 18.798466902309986 10.379387157439192 11 26.891058865513372 24.041353702885498 34.46662333322004 14.600964098381086 12 26.293701639307116 22.240572851170853 34.60607631218208 16.859649197339948 13 20.10838318095821 28.618307389910385 35.55158804336743 15.72172138576397 14 16.59908206731695 31.43016659302813 34.6187152341139 17.352036105541018 15 15.218217890765729 24.83378224518234 43.95887854173039 15.98912132232154 16 17.913211319942448 23.439889712129965 41.69934376734754 16.947555200580044 17 18.237539509907215 23.32327176018761 34.78241936580226 23.65676936410291 18 20.06494352490682 24.377860573927425 36.94689670212645 18.6102991990393 19 22.612624477449614 26.466044137806026 32.852346237070776 18.068985147673587 20 23.989842130306226 25.182892635013427 32.18156289297489 18.64570234170547 21 21.32950837779968 26.987886460705347 33.557824660979506 18.12478050051547 22 20.724964313632192 24.608405838969514 32.778672297182474 21.887957550215816 23 17.83928955805549 28.448974158538103 32.66895795806002 21.042778325346383 24 18.262746547485527 25.388514087618532 37.76690429256024 18.5818350723357 25 17.746922758839457 26.79897529143867 35.62784641267036 19.826255537051512 26 17.809126080503916 29.276416408931787 33.654935481312805 19.259522029251492 27 18.282713919949245 28.62846809185558 33.92403476871835 19.164783219476828 28 17.234356059318674 27.488982542002287 37.55154697572194 17.7251144229571 29 18.176823120234737 24.974297318424362 36.17882552198394 20.670054039356966 30 19.833442375012744 26.77922033783095 33.725033703791816 19.662303583364487 31 23.15177893711269 25.94568874689869 30.38410993667086 20.518422379317766 32 23.559446124913617 26.56173883243268 30.10821324587341 19.770601796780298 33 23.052579331362086 27.1804795568093 30.026148761173232 19.740792350655383 34 19.814678709399676 28.31840736838528 30.63961441729259 21.227299504922453 35 21.117160328088 27.15937928378026 30.60555659404774 21.117903794083993 36 23.084902400616297 28.14255995876242 29.655194632317123 19.11734300830416 37 20.95550957867428 29.044986065323048 30.460722337400448 19.538782018602227 38 19.806111148874464 29.968300026056717 29.713361995717634 20.51222682935119 39 19.43211234974906 28.690458994664038 31.08640207773964 20.791026577847262 40 21.06058610610747 26.528035040614483 31.18312346350361 21.22825538977444 41 18.4941414879516 25.926748065572287 31.23778591578017 24.34132453069594 42 20.99505488903239 26.982221957878753 29.623190191346904 22.399532961741947 43 21.23073360976107 26.80906518709853 30.249790413395417 21.710410789744984 44 20.646227724342634 29.468443054753084 29.478143515843612 20.40718570506067 45 19.36512960382467 30.456721782279168 28.75344118546715 21.424707428429006 46 21.404563040251958 29.440899409758803 28.935023904201927 20.21951364578731 47 20.585405125242158 26.83777713580079 30.043602510507654 22.5332152284494 48 21.226733054639794 25.595268440788953 30.778819574255966 22.399178930315287 49 20.75353464976379 25.227146563346135 31.21126896192321 22.808049824966865 50 19.63844186520749 27.617177321596483 30.819993429176723 21.924387384019305 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1465.0 1 1981.5 2 2498.0 3 26431.5 4 50365.0 5 38158.5 6 25952.0 7 26433.5 8 26915.0 9 27756.5 10 28598.0 11 28850.5 12 29103.0 13 28387.0 14 27671.0 15 26737.5 16 25804.0 17 24407.0 18 23010.0 19 22069.5 20 21129.0 21 20825.5 22 20522.0 23 21813.5 24 23105.0 25 26445.0 26 29785.0 27 34770.0 28 39755.0 29 46837.5 30 53920.0 31 62130.0 32 70340.0 33 78145.0 34 85950.0 35 95893.0 36 105836.0 37 116643.5 38 127451.0 39 145038.5 40 162626.0 41 185904.5 42 209183.0 43 224368.0 44 239553.0 45 250021.5 46 260490.0 47 261498.0 48 262506.0 49 246345.0 50 230184.0 51 202633.5 52 175083.0 53 152110.0 54 129137.0 55 113759.5 56 98382.0 57 87641.0 58 76900.0 59 67866.5 60 58833.0 61 49570.5 62 40308.0 63 32796.5 64 25285.0 65 19488.5 66 13692.0 67 11174.5 68 8657.0 69 7437.0 70 6217.0 71 4954.5 72 3692.0 73 2872.5 74 2053.0 75 1625.0 76 1197.0 77 939.5 78 682.0 79 528.0 80 374.0 81 324.0 82 274.0 83 182.5 84 91.0 85 53.0 86 15.0 87 13.5 88 12.0 89 7.0 90 2.0 91 2.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2824608.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.07752420833811 #Duplication Level Percentage of deduplicated Percentage of total 1 76.27362986644201 25.992164682314982 2 7.043555819094263 4.80053887875931 3 3.1040738138937103 3.17337451612294 4 1.9031220072504689 2.5941474509399547 5 1.434736533966531 2.4446134484415785 6 1.1095493255133797 2.2686416400316447 7 0.9252808118091655 2.2071895484756308 8 0.8036632487984183 2.19094830530238 9 0.6979462876841586 2.1405853363208966 >10 6.364312795528179 42.6319563430479 >50 0.3154867718240912 6.695823504265194 >100 0.022783679283388463 1.307272464852079 >500 0.0010935523013568171 0.26730582617689896 >1k 5.467761506783946E-4 0.27118144389924076 >5k 0.0 0.0 >10k+ 2.187104602713579E-4 1.0142566110492834 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16820 0.5954808596449489 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10397 0.3680864743001507 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05696365654986462 0.0 2 0.0 0.0 0.0 0.1729443519242316 0.0 3 0.0 0.0 0.0 0.2737370990948125 0.0 4 0.0 0.0 0.0 0.40037414041169606 0.0 5 0.0 0.0 0.0 0.65885248501739 0.0 6 0.0 0.0 0.0 1.1316260521814 0.0 7 0.0 0.0 0.0 1.493233751373642 0.0 8 0.0 0.0 0.0 2.423628340640542 0.0 9 0.0 0.0 0.0 3.3582005007420497 0.0 10 0.0 0.0 0.0 4.56254460795976 0.0 11 3.540314266616819E-5 0.0 0.0 5.171018420963192 0.0 12 3.540314266616819E-5 0.0 0.0 5.777474254834654 0.0 13 3.540314266616819E-5 0.0 0.0 6.123823199537776 0.0 14 3.540314266616819E-5 0.0 0.0 6.277756063850276 0.0 15 3.540314266616819E-5 0.0 0.0 6.418271137092297 0.0 16 3.540314266616819E-5 0.0 0.0 6.671828444867394 0.0 17 3.540314266616819E-5 0.0 0.0 6.948964245658159 0.0 18 3.540314266616819E-5 0.0 0.0 7.412532995728965 0.0 19 3.540314266616819E-5 0.0 0.0 7.5995677984343315 0.0 20 7.080628533233638E-5 0.0 0.0 7.834680068880354 0.0 21 7.080628533233638E-5 0.0 0.0 8.055489469689245 0.0 22 7.080628533233638E-5 0.0 0.0 8.287380054152647 0.0 23 7.080628533233638E-5 0.0 0.0 8.552762011578244 0.0 24 7.080628533233638E-5 0.0 0.0 8.754382909062072 0.0 25 7.080628533233638E-5 0.0 0.0 8.936178046652845 0.0 26 7.080628533233638E-5 0.0 0.0 9.107352241443769 0.0 27 7.080628533233638E-5 0.0 0.0 9.302812992103682 0.0 28 7.080628533233638E-5 0.0 0.0 9.496893020199616 0.0 29 7.080628533233638E-5 0.0 0.0 9.704036807939367 0.0 30 7.080628533233638E-5 0.0 0.0 9.96743618937566 0.0 31 1.0620942799850457E-4 0.0 0.0 10.190405181887186 0.0 32 1.0620942799850457E-4 0.0 0.0 10.397761388482932 0.0 33 1.0620942799850457E-4 0.0 0.0 10.611454757615924 0.0 34 1.0620942799850457E-4 0.0 0.0 10.821289184198303 0.0 35 1.0620942799850457E-4 0.0 0.0 11.05774677406564 0.0 36 1.4161257066467277E-4 0.0 0.0 11.275086666893246 0.0 37 1.4161257066467277E-4 0.0 0.0 11.510623775051263 0.0 38 1.4161257066467277E-4 0.0 0.0 11.74357645379465 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTCGA 20 7.8584335E-4 44.0 2 CGCGTCA 25 4.4444932E-5 44.0 39 CGTTTTT 26075 0.0 43.13097 1 GAGCGAT 1680 0.0 41.25 7 AACGCCG 55 7.8216544E-11 40.000004 13 ATCGCGA 55 7.8216544E-11 40.000004 2 GCGAACG 100 0.0 39.600002 1 GCGATCG 95 0.0 39.36842 9 GTTTTTA 11875 0.0 39.331367 2 ATTACGA 90 0.0 39.11111 2 CGAGGTT 270 0.0 39.11111 6 CTATGCG 70 0.0 37.714287 1 TATACGA 105 0.0 37.714287 2 CGGTCTA 295 0.0 37.288136 31 AATCGCG 125 0.0 36.96 1 AGCGATA 405 0.0 36.938274 8 GAGACCG 555 0.0 36.864864 7 CGTACTA 30 1.3015754E-4 36.666668 23 TAAGCGA 120 0.0 36.666668 2 TCGACAG 150 0.0 36.666668 1 >>END_MODULE