##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546782_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1320286 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.394478166094316 31.0 31.0 33.0 30.0 34.0 2 31.788992687947914 31.0 31.0 34.0 30.0 34.0 3 31.93667811368143 31.0 31.0 34.0 30.0 34.0 4 35.63961293234951 37.0 35.0 37.0 33.0 37.0 5 35.51299415429687 37.0 35.0 37.0 33.0 37.0 6 35.56449360214378 37.0 35.0 37.0 33.0 37.0 7 35.93118536438317 37.0 35.0 37.0 35.0 37.0 8 22.23640408214584 35.0 0.0 37.0 0.0 37.0 9 29.992703853559 37.0 18.0 39.0 17.0 39.0 10 34.27030582767673 35.0 32.0 39.0 27.0 39.0 11 35.88379260251188 37.0 35.0 39.0 32.0 39.0 12 36.14492920473291 37.0 35.0 39.0 32.0 39.0 13 36.15947983997407 38.0 35.0 39.0 32.0 39.0 14 37.223933299300306 39.0 35.0 41.0 32.0 41.0 15 37.5316582922185 39.0 35.0 41.0 33.0 41.0 16 37.63278789595588 39.0 35.0 41.0 33.0 41.0 17 37.598515018715645 39.0 35.0 41.0 33.0 41.0 18 37.573134154266576 39.0 36.0 41.0 33.0 41.0 19 37.57426875692085 39.0 36.0 41.0 33.0 41.0 20 37.45344720765046 39.0 35.0 41.0 32.0 41.0 21 37.34161234762771 39.0 35.0 41.0 32.0 41.0 22 37.27842528058314 39.0 35.0 41.0 32.0 41.0 23 37.16027739444333 39.0 35.0 41.0 32.0 41.0 24 37.06737176642031 39.0 35.0 41.0 32.0 41.0 25 36.92275007081799 38.0 35.0 41.0 32.0 41.0 26 36.85776187886564 38.0 35.0 41.0 32.0 41.0 27 36.74157871855037 38.0 35.0 40.0 31.0 41.0 28 36.76479793014544 38.0 35.0 40.0 31.0 41.0 29 36.67359344869218 38.0 35.0 40.0 31.0 41.0 30 36.60774786675008 38.0 35.0 40.0 31.0 41.0 31 36.52342295532937 38.0 35.0 40.0 31.0 41.0 32 36.26095255118967 38.0 35.0 40.0 30.0 41.0 33 36.16231634660975 38.0 35.0 40.0 30.0 41.0 34 36.079999333477744 38.0 35.0 40.0 30.0 41.0 35 35.93733857664173 38.0 35.0 40.0 30.0 41.0 36 35.800320536611004 38.0 35.0 40.0 29.0 41.0 37 35.771026126157516 38.0 35.0 40.0 29.0 41.0 38 35.71585095956482 38.0 35.0 40.0 29.0 41.0 39 35.62702853775621 38.0 35.0 40.0 28.0 41.0 40 35.53261111607637 38.0 35.0 40.0 28.0 41.0 41 35.53006469810329 38.0 35.0 40.0 28.0 41.0 42 35.30868236124597 38.0 34.0 40.0 27.0 41.0 43 35.326380799311664 38.0 34.0 40.0 27.0 41.0 44 35.12265069840928 37.0 34.0 40.0 27.0 41.0 45 34.915672058932685 37.0 34.0 40.0 26.0 41.0 46 34.97858267072437 37.0 34.0 40.0 26.0 41.0 47 34.82677389595891 37.0 34.0 40.0 26.0 41.0 48 34.859323661691484 37.0 34.0 40.0 26.0 41.0 49 34.78998035274176 37.0 34.0 40.0 26.0 41.0 50 34.29484596519239 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 2.0 13 5.0 14 8.0 15 25.0 16 64.0 17 181.0 18 492.0 19 1004.0 20 1833.0 21 3228.0 22 4889.0 23 7173.0 24 9814.0 25 13548.0 26 17565.0 27 20292.0 28 23008.0 29 26638.0 30 32456.0 31 41201.0 32 53211.0 33 70470.0 34 110921.0 35 176728.0 36 126739.0 37 181498.0 38 210321.0 39 186971.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.889075548782614 25.476146834852447 29.606236830504905 13.028540785860033 2 30.168160534914406 26.33421849508364 29.85792472237076 13.639696247631194 3 27.940537126046934 25.729501032352083 32.138112499867454 14.191849341733533 4 25.612935379152702 27.719903111901512 31.493555184255534 15.173606324690256 5 22.98108137176339 32.672314937824076 29.81225279977217 14.53435089064036 6 19.88061677545623 41.6399174118335 27.48737773482412 10.992088077886155 7 86.55192890025343 4.787750532839096 6.608643884734065 2.051676682173408 8 54.23529447407607 39.866816735161926 3.7573677218420856 2.1405210689199157 9 81.90717768725867 5.778142008625404 8.566098557433769 3.7485817466821585 10 48.346191658474 25.51522927608109 13.854801156719073 12.283777908725837 11 42.6958249954934 21.927446023058643 21.358478390288166 14.018250591159795 12 39.00942674541728 21.28364611909844 24.192485567520976 15.514441567963305 13 23.848620677641055 37.481121514580934 24.041987872324633 14.628269935453378 14 16.475445471662958 40.59885509654727 26.485549343096874 16.440150088692903 15 14.62274083039584 23.115824904604 45.46916349942361 16.79227076557655 16 15.626992939408582 19.412839339355262 43.35507609714865 21.605091624087507 17 16.38569219093439 20.33650284862522 28.889498184484268 34.38830677595612 18 21.310231268073736 23.686686066503775 32.74502645638899 22.258056209033498 19 27.35687570723313 26.166679037723643 24.632390254838725 21.844055000204502 20 29.708790368147508 23.913227891532593 23.82544388109849 22.55253785922141 21 22.779837095901946 29.508833692093983 25.79766808100669 21.913661130997376 22 22.67773800525038 26.130323278441185 23.874221191469122 27.317717524839313 23 19.62544478999247 31.461289447892348 23.656238118104714 25.257027644010467 24 20.314083463734374 25.347538336390752 34.982571957893974 19.355806241980904 25 18.505157215936546 26.166376073062956 32.144777722402566 23.183688988597925 26 17.691697101991537 32.28255090185005 26.972186329325616 23.053565666832792 27 19.259311997552047 31.715779762869563 27.04179246011849 21.983115779459904 28 17.042671057634482 28.529348944092416 34.81109395994505 19.61688603832806 29 17.356618187271547 24.42819207353558 34.318397680502564 23.896792058690313 30 20.326883720648407 29.272445515592832 29.53148030048035 20.86919046327841 31 27.50502542630915 26.41420116550505 23.236632063053005 22.844141345132797 32 28.112090865161033 26.073517404562345 24.33866601630253 21.475725713974096 33 27.22894887925798 26.916895278750207 23.538990794418783 22.315165047573025 34 19.997030946325268 26.153575816148926 27.65582608616618 26.19356715135963 35 20.941371793687125 24.446748659002672 29.754765255406785 24.85711429190342 36 27.30612912656803 24.289737223601556 26.74708358643506 21.657050063395356 37 20.51434310444858 30.271320001878383 29.17193698940987 20.042399904263167 38 20.63719527435722 29.72310544836498 25.314363706045505 24.325335571232294 39 20.45155367852117 30.108552237924208 26.635138144311156 22.804755939243467 40 22.907157994555725 25.074491435946456 26.588860292391193 25.429490277106627 41 18.190831380473625 24.59073261399424 26.99922592529194 30.219210080240188 42 22.05370654540001 26.138351841949397 23.803327460868324 28.004614151782263 43 22.50254869020803 26.346034116850443 25.41737169067914 25.734045502262386 44 21.139510681776525 28.884196302922245 27.100870568952484 22.875422446348743 45 18.21135723623518 32.4754636495426 24.54528791489117 24.767891199331054 46 22.71416950569801 29.915715231396835 26.555382697385266 20.814732565519893 47 21.367037141952576 26.738979281761676 27.334683545837795 24.559300030447947 48 23.049854349739373 23.484305673164755 28.767251943897005 24.698588033198867 49 21.606227741565085 22.83959687522249 29.98827526763141 25.56590011558102 50 19.576515997291498 28.914871474816824 27.682335493976307 23.82627703391538 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 824.0 1 1139.5 2 1455.0 3 4675.5 4 7896.0 5 6056.5 6 4217.0 7 4491.5 8 4766.0 9 5320.5 10 5875.0 11 6130.5 12 6386.0 13 6344.0 14 6302.0 15 6064.0 16 5826.0 17 5605.0 18 5384.0 19 5153.0 20 4922.0 21 5004.5 22 5087.0 23 5424.5 24 5762.0 25 6829.5 26 7897.0 27 9219.5 28 10542.0 29 12423.0 30 14304.0 31 17325.5 32 20347.0 33 23617.5 34 26888.0 35 29849.5 36 32811.0 37 37330.0 38 41849.0 39 55962.5 40 70076.0 41 87117.0 42 104158.0 43 114660.5 44 125163.0 45 128854.0 46 132545.0 47 130111.0 48 127677.0 49 122450.0 50 117223.0 51 103894.0 52 90565.0 53 79601.0 54 68637.0 55 63232.5 56 57828.0 57 55064.5 58 52301.0 59 48426.5 60 44552.0 61 40304.0 62 36056.0 63 30616.0 64 25176.0 65 20435.5 66 15695.0 67 13485.0 68 11275.0 69 9841.0 70 8407.0 71 7004.5 72 5602.0 73 4626.0 74 3650.0 75 2808.0 76 1966.0 77 1591.5 78 1217.0 79 958.5 80 700.0 81 492.0 82 284.0 83 203.0 84 122.0 85 83.5 86 45.0 87 30.5 88 16.0 89 10.0 90 4.0 91 4.0 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1320286.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.858481071225423 #Duplication Level Percentage of deduplicated Percentage of total 1 75.78382053609415 22.627897709821116 2 6.726738364283502 4.017003802420896 3 2.8993270071541084 2.597085016872108 4 1.7813830222115343 2.127575649972217 5 1.3515680069240186 2.017788387560734 6 1.0421815150360176 1.867077422369038 7 0.871000834257484 1.8204733345889048 8 0.7471926924710339 1.784803109176346 9 0.6472153123935983 1.739237953870035 >10 7.6848505650654 48.59657663191323 >50 0.4196623082237858 7.876208743150857 >100 0.04301166155423268 1.9929772295680055 >500 0.0012801089569685433 0.25203658714659455 >1k 7.68065374181126E-4 0.6832584215699915 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4568 0.34598564250473 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2741 0.20760653373587237 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1629 0.12338235806484353 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05832069718227717 0.0 2 0.0 0.0 0.0 0.1902618069115328 0.0 3 0.0 0.0 0.0 0.2978142614554725 0.0 4 0.0 0.0 0.0 0.4625512957041126 0.0 5 0.0 0.0 0.0 0.7656674387216104 0.0 6 0.0 0.0 0.0 1.1806532826978398 0.0 7 0.0 0.0 0.0 1.47922495580503 0.0 8 0.0 0.0 0.0 2.3411594154599835 0.0 9 0.0 0.0 0.0 3.060851966922318 0.0 10 7.574116517178854E-5 0.0 0.0 4.149101028110576 0.0 11 7.574116517178854E-5 0.0 0.0 4.787599050508754 0.0 12 7.574116517178854E-5 0.0 0.0 5.444956623034706 0.0 13 7.574116517178854E-5 0.0 0.0 5.748451471878063 0.0 14 7.574116517178854E-5 0.0 0.0 5.866986395371912 0.0 15 7.574116517178854E-5 0.0 0.0 6.009228303564531 0.0 16 7.574116517178854E-5 0.0 0.0 6.29590861373975 0.0 17 7.574116517178854E-5 0.0 0.0 6.604478120649617 0.0 18 7.574116517178854E-5 0.0 0.0 7.127016419169786 0.0 19 7.574116517178854E-5 0.0 0.0 7.321519731330939 0.0 20 7.574116517178854E-5 0.0 0.0 7.571465576397841 0.0 21 7.574116517178854E-5 0.0 0.0 7.8212599391344 0.0 22 7.574116517178854E-5 0.0 0.0 8.060904985737938 0.0 23 7.574116517178854E-5 0.0 0.0 8.336375603467733 0.0 24 7.574116517178854E-5 0.0 0.0 8.529667056986138 0.0 25 7.574116517178854E-5 0.0 0.0 8.694101126574092 0.0 26 7.574116517178854E-5 0.0 0.0 8.851794232461755 0.0 27 7.574116517178854E-5 0.0 0.0 9.031073570423377 0.0 28 7.574116517178854E-5 0.0 0.0 9.19974914526095 0.0 29 7.574116517178854E-5 0.0 0.0 9.383345729637366 0.0 30 7.574116517178854E-5 0.0 0.0 9.614659248072009 0.0 31 7.574116517178854E-5 0.0 0.0 9.813934253638985 0.0 32 7.574116517178854E-5 0.0 0.0 9.997152132189541 0.0 33 7.574116517178854E-5 0.0 0.0 10.18302095152111 0.0 34 7.574116517178854E-5 0.0 0.0 10.362830477638935 0.0 35 7.574116517178854E-5 0.0 0.0 10.579980398186454 0.0 36 7.574116517178854E-5 0.0 0.0 10.77554408666001 0.0 37 7.574116517178854E-5 0.0 0.0 10.96648756405809 0.0 38 7.574116517178854E-5 0.0 0.0 11.166595722441956 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGT 20 7.856906E-4 44.000004 13 TCGAGTA 20 7.856906E-4 44.000004 41 TATACGA 40 8.314601E-9 44.000004 2 TTCGATC 20 7.856906E-4 44.000004 28 TCGACCA 25 4.4432003E-5 44.0 44 CGGTCTA 535 0.0 42.766354 31 TCACGAC 570 0.0 41.68421 25 CGACGGT 560 0.0 41.25 28 CGTTTTT 4040 0.0 41.00495 1 CACGACG 570 0.0 40.91228 26 CGACAGA 70 0.0 40.857143 2 GACGGTC 560 0.0 40.857143 29 GCGATAT 105 0.0 39.809525 9 ACGGTCT 575 0.0 39.791306 30 TCTAGCG 50 1.3478711E-9 39.600002 1 GAGCGAT 800 0.0 39.600002 7 ACATACG 445 0.0 39.550564 17 CTCACGA 615 0.0 38.99187 24 TCTAAAC 290 0.0 38.689655 34 TCTCACG 615 0.0 38.634148 23 >>END_MODULE