##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546779_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1756911 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46407814624645 31.0 31.0 33.0 30.0 34.0 2 31.85684932247564 31.0 31.0 34.0 30.0 34.0 3 31.923170837908124 31.0 31.0 34.0 30.0 34.0 4 35.658766437229886 37.0 35.0 37.0 33.0 37.0 5 35.553235764361425 37.0 35.0 37.0 33.0 37.0 6 35.60253137466838 37.0 35.0 37.0 33.0 37.0 7 36.0190151920046 37.0 35.0 37.0 35.0 37.0 8 22.17535378855275 35.0 0.0 37.0 0.0 37.0 9 30.000114405339826 37.0 18.0 39.0 17.0 39.0 10 34.305766769062295 35.0 32.0 39.0 27.0 39.0 11 35.95056095613267 37.0 35.0 39.0 32.0 39.0 12 36.423160308063416 37.0 35.0 39.0 32.0 39.0 13 36.55179744449207 39.0 35.0 39.0 32.0 39.0 14 37.71346812672924 39.0 36.0 41.0 33.0 41.0 15 37.97153754515738 40.0 36.0 41.0 33.0 41.0 16 38.00508619958552 40.0 36.0 41.0 33.0 41.0 17 37.96208174460744 40.0 36.0 41.0 33.0 41.0 18 37.87868366695866 39.0 36.0 41.0 33.0 41.0 19 37.83027711705374 39.0 36.0 41.0 33.0 41.0 20 37.65882677039418 39.0 35.0 41.0 33.0 41.0 21 37.58394306826015 39.0 35.0 41.0 33.0 41.0 22 37.54925320633772 39.0 35.0 41.0 33.0 41.0 23 37.38483622676391 39.0 35.0 41.0 33.0 41.0 24 37.19499337188964 39.0 35.0 41.0 33.0 41.0 25 37.059960920046606 38.0 35.0 41.0 32.0 41.0 26 36.99153457403363 39.0 35.0 41.0 32.0 41.0 27 36.8742594246379 38.0 35.0 40.0 32.0 41.0 28 36.88267760859827 38.0 35.0 40.0 32.0 41.0 29 36.786718849161964 38.0 35.0 40.0 32.0 41.0 30 36.642443470386375 38.0 35.0 40.0 31.0 41.0 31 36.444113560675525 38.0 35.0 40.0 31.0 41.0 32 35.99002112229931 38.0 35.0 40.0 30.0 41.0 33 35.64310713519353 38.0 35.0 40.0 27.0 41.0 34 35.33990623315581 38.0 35.0 41.0 24.0 41.0 35 35.02140404380188 38.0 35.0 41.0 23.0 41.0 36 34.781859752713714 38.0 35.0 40.0 21.0 41.0 37 34.668539271482736 38.0 34.0 40.0 20.0 41.0 38 34.50825625202415 38.0 34.0 40.0 18.0 41.0 39 34.316159441201066 38.0 34.0 40.0 18.0 41.0 40 34.03824098090342 38.0 33.0 40.0 15.0 41.0 41 33.92777721808333 38.0 34.0 40.0 15.0 41.0 42 33.38030554763446 38.0 33.0 40.0 12.0 41.0 43 33.17854404690961 38.0 33.0 40.0 10.0 41.0 44 32.679253530770765 37.0 31.0 40.0 10.0 41.0 45 32.36243440902812 37.0 31.0 40.0 9.0 41.0 46 32.2667477180119 37.0 30.0 40.0 9.0 41.0 47 32.076978856641006 37.0 30.0 40.0 9.0 41.0 48 32.0762269688106 37.0 30.0 40.0 9.0 41.0 49 31.951159165148376 36.0 30.0 40.0 9.0 41.0 50 31.484298293994403 36.0 29.0 40.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 1.0 13 4.0 14 6.0 15 22.0 16 80.0 17 247.0 18 706.0 19 1538.0 20 2995.0 21 5328.0 22 8694.0 23 13793.0 24 20687.0 25 32104.0 26 43166.0 27 46358.0 28 44903.0 29 45093.0 30 51111.0 31 60684.0 32 75360.0 33 93861.0 34 132997.0 35 195402.0 36 154944.0 37 217291.0 38 255428.0 39 254102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.198747119233698 24.169522531306367 28.825535271849283 17.80619507761065 2 35.346241215405904 25.03120533709448 27.609992765712093 12.012560681787523 3 25.427241334364687 23.743376869972355 37.79394630689887 13.035435488764085 4 22.883800033126324 26.100980641591974 37.30923194174321 13.705987383538496 5 20.771854692696444 30.608721784996508 35.80363490239403 12.815788619913018 6 18.307131095428282 38.363525528612435 32.86028717447839 10.469056201480894 7 81.91610161243229 3.2553726398206853 12.98899033587928 1.8395354118677611 8 50.96604210458015 39.54878761644728 7.5262207362808935 1.9589495426916903 9 76.64076324867908 5.212899230524483 14.863928793205803 3.2824087275906404 10 38.619258459876455 28.584714877418378 21.17546079454224 11.62056586816293 11 31.924041684524713 23.70262352503912 30.9317888043276 13.441545986108574 12 28.937720806574724 22.05330833491281 32.983970161265994 16.025000697246476 13 20.102213487194287 32.10999305030249 34.00900785526416 13.778785607239069 14 16.504023254450566 34.77415759819365 33.14533291669299 15.576486230662795 15 14.964901466266648 24.40362659235442 46.02913864162726 14.602333299751665 16 16.043100646532466 22.75226235136555 43.7348277744291 17.469809227672886 17 16.946959749241707 22.67291854852067 34.112257251505625 26.26786445073199 18 19.80401966861156 24.38655116849971 37.31350079770689 18.495928365181843 19 23.975716470555426 26.854405260141235 31.48378033947081 17.68609792983253 20 24.798410391875287 24.896821751357923 31.394703545028747 18.910064311738044 21 19.975798432589926 28.472130916136333 33.26776370573125 18.28430694554249 22 20.237621598362125 25.39508261943832 31.435343053802956 22.931952728396602 23 17.624000305080905 29.925192568092523 31.055187200717622 21.39561992610895 24 17.597305725788047 25.55519317711597 38.44008034556104 18.40742075153494 25 16.478410118668503 27.55239166924221 36.56667867638144 19.40251953570784 26 16.23565450953406 31.375977496868085 33.30009317489617 19.088274818701688 27 17.796063659456856 30.292940279843428 33.427475836852295 18.483520223847425 28 16.529579472153113 27.58375353105536 38.96384051326447 16.922826483527054 29 16.87433227977968 24.824421954213957 38.248095663354604 20.053150102651756 30 18.013319968968265 28.232619637534285 35.17281182712158 18.581248566375873 31 23.027518183903453 25.597141801719044 31.80428604522369 19.571053969153816 32 24.0307562534471 25.878203278367547 32.675474170290926 17.41556629789443 33 22.666999068251037 26.48449466136873 31.818287892784554 19.030218377595677 34 18.333541084323564 26.36394216895449 34.471182660931596 20.831334085790346 35 20.510259199242306 25.534133487695165 33.36976090422338 20.58584640883915 36 25.088521843166784 24.959545474984218 31.254969659817718 18.696963022031284 37 21.620218667877882 28.6272326828166 31.518272695657323 18.234275953648194 38 21.30250194802127 29.58339950060077 29.09572539531029 20.018373156067668 39 21.892400924121937 28.581584383045016 28.69382683584997 20.83218785698308 40 22.941458047675724 25.82680625256487 28.887348306203332 22.344387393556076 41 18.572198591732878 25.23286609281859 29.284579583143373 26.910355732305163 42 21.02115588097519 26.796519573273773 28.346171206168098 23.83615333958294 43 20.86776165668039 26.968526009570205 28.988377897343693 23.175334436405713 44 19.96162583079052 29.411620736622403 29.939479006050963 20.68727442653612 45 18.470030639002204 31.814474381457003 27.715860393611287 21.99963458592951 46 21.334319154470545 29.668662783715284 28.682044793390215 20.314973268423955 47 21.11541222065318 26.656387261506133 29.71727082362169 22.510929694219 48 21.958141305962567 25.09597811158334 30.68533352002463 22.260547062429456 49 20.80611937656489 24.23594593010118 31.283371781496044 23.674562911837878 50 19.354366840437564 28.870215964269107 29.38834124210048 22.38707595319285 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1113.0 1 1386.0 2 1659.0 3 15000.5 4 28342.0 5 21880.5 6 15419.0 7 16101.0 8 16783.0 9 17860.0 10 18937.0 11 19432.5 12 19928.0 13 19689.0 14 19450.0 15 18784.5 16 18119.0 17 17364.5 18 16610.0 19 15988.0 20 15366.0 21 14935.5 22 14505.0 23 14961.5 24 15418.0 25 16335.0 26 17252.0 27 19431.5 28 21611.0 29 24902.5 30 28194.0 31 32158.0 32 36122.0 33 41846.0 34 47570.0 35 53828.5 36 60087.0 37 67339.5 38 74592.0 39 88509.5 40 102427.0 41 119778.0 42 137129.0 43 148378.5 44 159628.0 45 165147.5 46 170667.0 47 167887.0 48 165107.0 49 157550.0 50 149993.0 51 134815.0 52 119637.0 53 102065.5 54 84494.0 55 71675.0 56 58856.0 57 50631.5 58 42407.0 59 36493.0 60 30579.0 61 25216.5 62 19854.0 63 16045.0 64 12236.0 65 9537.0 66 6838.0 67 5405.0 68 3972.0 69 3240.5 70 2509.0 71 2055.0 72 1601.0 73 1251.0 74 901.0 75 691.0 76 481.0 77 388.5 78 296.0 79 206.0 80 116.0 81 85.5 82 55.0 83 39.5 84 24.0 85 18.5 86 13.0 87 12.5 88 12.0 89 6.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1756911.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.77044382616894 #Duplication Level Percentage of deduplicated Percentage of total 1 80.7580570491292 35.34815999579457 2 7.023267207052348 6.148230455249185 3 2.8361786633750365 3.724223965987078 4 1.6645739903529793 2.914365693569878 5 1.1055070237733629 2.4194266541753597 6 0.8296665062934458 2.1788922724902666 7 0.6603318774949851 2.0232113545366044 8 0.550488625343312 1.9276105162027517 9 0.45559855661880844 1.7947575926790484 >10 3.8882546615187694 33.44358671597133 >50 0.21022520551521726 5.777086455071262 >100 0.01731379827860036 1.117935768816224 >500 1.3420881348511626E-4 0.049932224318830064 >1k 1.3420881348511626E-4 0.16084050609994907 >5k 1.3420881348511626E-4 0.3685585592662821 >10k+ 1.3420881348511626E-4 0.6031812697714671 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10268 0.5844348404671608 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6274 0.35710403088147324 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2738 0.15584170171397413 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07205828866687043 0.0 2 0.0 0.0 0.0 0.2609124764999479 0.0 3 0.0 0.0 0.0 0.4412858704851868 0.0 4 0.0 0.0 0.0 0.6106171570443807 0.0 5 0.0 0.0 0.0 0.9726161427642037 0.0 6 0.0 0.0 0.0 1.54891169786062 0.0 7 0.0 0.0 0.0 1.9359546385673492 0.0 8 0.0 0.0 0.0 2.929687388831876 0.0 9 0.0 0.0 0.0 3.899969890335936 0.0 10 0.0 0.0 0.0 5.302032943046062 0.0 11 0.0 0.0 0.0 6.107309932034121 0.0 12 0.0 0.0 0.0 6.872630429202162 0.0 13 0.0 0.0 0.0 7.293767299538793 0.0 14 0.0 0.0 0.0 7.477328105976911 0.0 15 0.0 0.0 0.0 7.666580720366598 0.0 16 0.0 0.0 0.0 8.00029142056712 0.0 17 0.0 0.0 0.0 8.387789705909976 0.0 18 0.0 0.0 0.0 9.003870998587862 0.0 19 0.0 0.0 0.0 9.249870938254698 0.0 20 0.0 0.0 0.0 9.563261884068117 0.0 21 0.0 0.0 0.0 9.86919656146498 0.0 22 0.0 0.0 0.0 10.178660159791816 0.0 23 0.0 0.0 0.0 10.538211668092465 0.0 24 0.0 0.0 0.0 10.807149593804125 0.0 25 0.0 0.0 0.0 11.04034296557993 0.0 26 0.0 0.0 0.0 11.268242955960774 0.0 27 0.0 0.0 0.0 11.53501799465084 0.0 28 0.0 0.0 0.0 11.779993408886392 0.0 29 0.0 0.0 0.0 12.039653687636994 0.0 30 0.0 0.0 0.0 12.381219082810683 0.0 31 0.0 0.0 0.0 12.660231508596622 0.0 32 0.0 0.0 0.0 12.927461891922812 0.0 33 0.0 0.0 0.0 13.17898288530267 0.0 34 0.0 0.0 0.0 13.417981901189076 0.0 35 0.0 0.0 0.0 13.693294651806495 0.0 36 0.0 0.0 0.0 13.953467193272738 0.0 37 0.0 0.0 0.0 14.23561011343204 0.0 38 0.0 0.0 0.0 14.512971914912024 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGA 25 4.4438035E-5 44.0 2 ACCGCGA 25 4.4438035E-5 44.0 2 TGCGCGA 25 4.4438035E-5 44.0 2 TCGACGA 25 4.4438035E-5 44.0 2 GTACGCG 25 4.4438035E-5 44.0 1 CGTTTTT 17390 0.0 43.43071 1 GAGCGAT 1230 0.0 42.03252 7 CACGACG 285 0.0 40.14035 26 GTTTTTA 7620 0.0 39.958004 2 TTCGCGA 50 1.3496901E-9 39.600002 2 TTAGCGA 150 0.0 39.6 2 CGACGGT 290 0.0 39.448277 28 GTAAGCG 45 2.3521352E-8 39.11111 1 TAATGCG 85 0.0 38.82353 1 AGCGATA 240 0.0 38.5 8 GCGAAGA 195 0.0 38.358974 2 ACGAGAT 250 0.0 37.84 5 CGCGTCA 35 7.2924067E-6 37.714287 39 CGGTCTA 305 0.0 37.508198 31 CGAGAAT 230 0.0 37.304348 6 >>END_MODULE