##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546777_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2568941 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.407292732686347 31.0 31.0 33.0 30.0 34.0 2 31.790808741812288 31.0 31.0 34.0 30.0 34.0 3 31.946334695892197 31.0 31.0 34.0 30.0 34.0 4 35.64184930677661 37.0 35.0 37.0 33.0 37.0 5 35.51743072339925 37.0 35.0 37.0 33.0 37.0 6 35.57228912614186 37.0 35.0 37.0 33.0 37.0 7 35.940585245048446 37.0 35.0 37.0 35.0 37.0 8 22.144263336526606 35.0 0.0 37.0 0.0 37.0 9 29.96301588864828 37.0 18.0 39.0 17.0 39.0 10 34.28909344356293 35.0 32.0 39.0 27.0 39.0 11 35.89976531185418 37.0 35.0 39.0 32.0 39.0 12 36.108847964978565 37.0 35.0 39.0 32.0 39.0 13 36.100920963151744 37.0 35.0 39.0 32.0 39.0 14 37.176142620636284 39.0 35.0 41.0 32.0 41.0 15 37.507168907343534 39.0 35.0 41.0 33.0 41.0 16 37.625713864195404 39.0 35.0 41.0 33.0 41.0 17 37.59173877484925 39.0 35.0 41.0 33.0 41.0 18 37.57616153893764 39.0 36.0 41.0 33.0 41.0 19 37.58555451448671 39.0 36.0 41.0 33.0 41.0 20 37.47135453869902 39.0 35.0 41.0 33.0 41.0 21 37.348741757790464 39.0 35.0 41.0 32.0 41.0 22 37.30603466564627 39.0 35.0 41.0 32.0 41.0 23 37.213697005886864 39.0 35.0 41.0 32.0 41.0 24 37.126703571627374 39.0 35.0 41.0 32.0 41.0 25 36.965350313611715 38.0 35.0 41.0 32.0 41.0 26 36.90108686809078 38.0 35.0 41.0 32.0 41.0 27 36.77710581909044 38.0 35.0 40.0 31.0 41.0 28 36.83152824451788 38.0 35.0 41.0 32.0 41.0 29 36.750298274658704 38.0 35.0 40.0 31.0 41.0 30 36.68177509720932 38.0 35.0 40.0 31.0 41.0 31 36.61179879179787 38.0 35.0 40.0 31.0 41.0 32 36.37360531051511 38.0 35.0 40.0 31.0 41.0 33 36.27594405632515 38.0 35.0 40.0 30.0 41.0 34 36.234808039577395 38.0 35.0 40.0 30.0 41.0 35 36.124640464689534 38.0 35.0 40.0 30.0 41.0 36 35.97202076653376 38.0 35.0 40.0 30.0 41.0 37 35.93595648946395 38.0 35.0 40.0 30.0 41.0 38 35.86421330812969 38.0 35.0 40.0 30.0 41.0 39 35.805655715720995 38.0 35.0 40.0 29.0 41.0 40 35.71771247373918 38.0 35.0 40.0 29.0 41.0 41 35.74012949304792 38.0 35.0 40.0 29.0 41.0 42 35.503798257725656 38.0 35.0 40.0 28.0 41.0 43 35.519023208395986 38.0 35.0 40.0 29.0 41.0 44 35.31988239511924 38.0 34.0 40.0 28.0 41.0 45 35.092962820088125 37.0 34.0 40.0 27.0 41.0 46 35.16725530091972 37.0 34.0 40.0 27.0 41.0 47 35.03612500248157 37.0 34.0 40.0 27.0 41.0 48 35.078244303781204 37.0 34.0 40.0 27.0 41.0 49 35.01664615886468 37.0 34.0 40.0 27.0 41.0 50 34.5107011021273 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 0.0 13 2.0 14 22.0 15 38.0 16 133.0 17 341.0 18 787.0 19 1742.0 20 3265.0 21 5383.0 22 8401.0 23 12217.0 24 17240.0 25 23897.0 26 30830.0 27 37430.0 28 42427.0 29 50183.0 30 62424.0 31 79689.0 32 103247.0 33 137039.0 34 219211.0 35 359188.0 36 242797.0 37 348919.0 38 414296.0 39 367789.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.33525370960252 24.473820146122467 29.056564553253654 13.13436159102136 2 29.30927568986598 26.341087631051085 30.897595546180312 13.452041132902623 3 28.72627281046937 25.974049228845658 31.78955842115487 13.510119539530102 4 25.266987447356716 28.741454163408193 30.855632729595577 15.135925659639518 5 22.57809735607007 33.1479002437191 30.21895014326915 14.055052256941675 6 20.26807933697193 42.01221437160293 26.72435840293724 10.995347888487903 7 87.45409100481483 4.706842235769526 5.89815024946077 1.9409165099548802 8 54.59374115637533 39.989902453968384 3.247096760883181 2.1692596287731014 9 83.33441678886359 5.11751729603755 8.210231375496752 3.3378345396021163 10 49.71406505637926 25.01735150787815 13.23989145721914 12.028691978523447 11 43.790846111296446 20.96646049870355 21.314814158830426 13.927879231169577 12 39.81270881659018 21.08172200140058 23.66364194428755 15.441927237721693 13 22.13484077680258 40.04572312092804 23.10800442672681 14.711431675542569 14 15.816673096034513 41.71952567225172 25.805108019218814 16.658693212494953 15 13.369945047395015 23.117774989772048 47.1975417107672 16.314738252065737 16 14.719917662569907 18.487851608892537 44.79663020676614 21.995600521771422 17 15.051026862820127 20.046937629163146 28.723781511525566 36.17825399649116 18 20.341961921274173 23.346001328952283 33.83943033335527 22.472606416418284 19 27.586231057856136 25.924145396877545 24.7200305495533 21.76959299571302 20 29.283778802237965 23.765395935523625 23.906971783314603 23.043853478923808 21 21.16140464105637 30.116339768021145 26.336727857899422 22.385527733023064 22 22.553729338275964 25.657537483344306 23.427007471171972 28.361725707207757 23 18.494819460625994 30.974047282518363 23.75274480807461 26.778388448781033 24 19.26291806623819 24.517145391817095 37.0703725776497 19.149563964295016 25 16.630198980825174 26.70832066598649 33.88984021042133 22.771640142766998 26 17.043715678950978 33.3136494765742 26.78111330700082 22.861521537474 27 18.300186730641148 32.390195025888104 27.267967617784915 22.04165062568584 28 16.03606310927343 28.49037794172774 36.686712540303574 18.786846408695258 29 16.173785229010708 23.892335402019743 35.426738099473674 24.507141269495875 30 19.779473331617968 29.934124606209327 29.90995122114521 20.37645084102749 31 27.982892561565254 26.55086278742875 22.816172111387534 22.650072539618467 32 30.19816336770677 26.542104314579433 23.49680276814454 19.762929549569257 33 26.652461072480836 27.34083811189124 23.329924665455533 22.676776150172387 34 19.63493906633122 26.51220872725376 27.505069209452454 26.34778299696256 35 19.872352070366738 26.138630665320843 28.615371080924007 25.37364618338841 36 28.57994792406677 24.868262836709757 25.978486855089315 20.573302384134163 37 21.244123551299932 31.358914042790392 27.498724182454946 19.898238223454722 38 19.867603031755106 32.69249858210056 24.967564455548025 22.472333930596307 39 20.086681632626053 32.35266983554702 26.254670698937808 21.305977832889116 40 23.248568184321865 26.25439821311583 26.02951955689134 24.46751404567096 41 17.80216050115592 24.4708617286267 27.15064300815005 30.576334762067326 42 21.90497952269048 26.689013099171994 24.146214335011976 27.25979304312555 43 21.343970141782158 26.779634098252934 26.11161564239895 25.764780117565955 44 20.6537246281639 29.767090797336333 27.537222536445956 22.041962038053814 45 17.284164953574255 35.089050312949965 24.085449996710707 23.54133473676507 46 22.344032034990295 30.76458353850867 26.31547396378508 20.57591046271596 47 21.058093587980416 27.063642177846823 27.035926477096982 24.842337757075775 48 21.950796067328913 24.43372580374559 29.231811863332013 24.383666265593487 49 21.07280782236727 22.799589402792826 31.176387468610606 24.951215306229297 50 19.740118593615033 29.723181653451753 27.50467994399249 23.032019808940728 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1524.0 1 2060.0 2 2596.0 3 8018.5 4 13441.0 5 10219.0 6 6997.0 7 7682.5 8 8368.0 9 9419.0 10 10470.0 11 10939.5 12 11409.0 13 11218.5 14 11028.0 15 10539.0 16 10050.0 17 9414.0 18 8778.0 19 8721.5 20 8665.0 21 8891.5 22 9118.0 23 9708.0 24 10298.0 25 12402.0 26 14506.0 27 17954.5 28 21403.0 29 26518.5 30 31634.0 31 36502.5 32 41371.0 33 47468.0 34 53565.0 35 61287.5 36 69010.0 37 78055.5 38 87101.0 39 115278.0 40 143455.0 41 180615.0 42 217775.0 43 238072.0 44 258369.0 45 265392.5 46 272416.0 47 265136.0 48 257856.0 49 247961.0 50 238066.0 51 212439.0 52 186812.0 53 159079.5 54 131347.0 55 116486.5 56 101626.0 57 93663.0 58 85700.0 59 78055.0 60 70410.0 61 62716.0 62 55022.0 63 48263.0 64 41504.0 65 34398.5 66 27293.0 67 22541.0 68 17789.0 69 14918.5 70 12048.0 71 10330.5 72 8613.0 73 7113.5 74 5614.0 75 4192.0 76 2770.0 77 2214.5 78 1659.0 79 1265.0 80 871.0 81 573.5 82 276.0 83 218.5 84 161.0 85 128.0 86 95.0 87 62.5 88 30.0 89 23.5 90 17.0 91 12.0 92 7.0 93 5.5 94 4.0 95 3.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2568941.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.017026123207142 #Duplication Level Percentage of deduplicated Percentage of total 1 78.41920620109107 18.049769176916808 2 7.354601430081788 3.3856210648393814 3 2.557648951285147 1.7660841817717075 4 1.3545174918990106 1.2470785798152217 5 0.8909207962644917 1.0253173620664158 6 0.6743685455210815 0.9313175057356762 7 0.5097476944792093 0.8213013200050803 8 0.4413836610390286 0.8127471405193702 9 0.3523638414662718 0.7299330969512517 >10 5.3516810910348145 30.92654768280547 >50 1.7106480016401762 27.16393186417359 >100 0.3789399003423924 11.846260389605916 >500 0.0025906916449950205 0.39105365325682306 >1k 0.0012089894343310097 0.5770993071393007 >5k 1.7271277633300138E-4 0.32593767439795596 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 8199 0.31915875062915033 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4976 0.19369849288091864 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2975 0.11580647434098332 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06021936665731132 0.0 2 0.0 0.0 0.0 0.19443809725486105 0.0 3 0.0 0.0 0.0 0.28688864399766284 0.0 4 0.0 0.0 0.0 0.42788059359868524 0.0 5 0.0 0.0 0.0 0.6973301449897059 0.0 6 0.0 0.0 0.0 1.1236926032945094 0.0 7 0.0 0.0 0.0 1.4050926043065994 0.0 8 0.0 0.0 0.0 2.3750642774590776 0.0 9 0.0 0.0 0.0 3.170138979447173 0.0 10 0.0 0.0 0.0 4.323532537337369 0.0 11 0.0 0.0 0.0 4.988553649149591 0.0 12 0.0 0.0 0.0 5.663929222197006 0.0 13 0.0 0.0 0.0 5.967750913703351 0.0 14 0.0 0.0 0.0 6.0861265400801345 0.0 15 0.0 0.0 0.0 6.223381541265447 0.0 16 0.0 0.0 0.0 6.499409678929956 0.0 17 3.892654599696918E-5 0.0 0.0 6.7975870212667395 0.0 18 3.892654599696918E-5 0.0 0.0 7.265406251058315 0.0 19 3.892654599696918E-5 0.0 0.0 7.441977063700568 0.0 20 3.892654599696918E-5 0.0 0.0 7.680441084478001 0.0 21 7.785309199393836E-5 0.0 0.0 7.915323863023713 0.0 22 7.785309199393836E-5 0.0 0.0 8.13922935559828 0.0 23 7.785309199393836E-5 0.0 0.0 8.415607832176761 0.0 24 7.785309199393836E-5 0.0 0.0 8.606776099567876 0.0 25 7.785309199393836E-5 0.0 0.0 8.761859458819801 0.0 26 7.785309199393836E-5 0.0 0.0 8.905031294996654 0.0 27 7.785309199393836E-5 0.0 0.0 9.06731606525802 0.0 28 7.785309199393836E-5 0.0 0.0 9.219908125566137 0.0 29 7.785309199393836E-5 0.0 0.0 9.388304363549027 0.0 30 7.785309199393836E-5 0.0 0.0 9.626456971958484 0.0 31 7.785309199393836E-5 0.0 0.0 9.818715182637515 0.0 32 7.785309199393836E-5 0.0 0.0 9.990342323938153 0.0 33 7.785309199393836E-5 0.0 0.0 10.155585511695286 0.0 34 1.1677963799090754E-4 0.0 0.0 10.334219431275377 0.0 35 1.1677963799090754E-4 0.0 0.0 10.549016112086653 0.0 36 1.1677963799090754E-4 0.0 0.0 10.724652687624978 0.0 37 1.1677963799090754E-4 0.0 0.0 10.911694741140415 0.0 38 1.1677963799090754E-4 0.0 0.0 11.09363741713025 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGGT 40 8.3200575E-9 44.0 31 CGAACGC 20 7.8583E-4 44.0 40 TGCGCAA 25 4.4443805E-5 44.0 13 ACCGTTC 20 7.8583E-4 44.0 12 TTCGCAC 25 4.4443805E-5 44.0 1 ACGGTCC 25 4.4443805E-5 44.0 33 CGACGGT 1140 0.0 43.421055 28 GACGGTC 1155 0.0 43.238094 29 CGGTCTA 1150 0.0 43.043476 31 TCACGAC 1175 0.0 42.50213 25 ACGGTCT 1200 0.0 41.616665 30 CGTTTTT 6700 0.0 41.602985 1 GGGCGTA 70 0.0 40.857143 7 CTCACGA 1230 0.0 40.780487 24 CACGACG 1220 0.0 40.573772 26 ACGACGG 1215 0.0 40.55967 27 ACGTTAG 115 0.0 40.17391 1 GGTCTAA 1245 0.0 39.93574 32 ACGCTTA 50 1.3496901E-9 39.600002 44 TCGTAGA 145 0.0 39.448277 2 >>END_MODULE