Basic Statistics
Measure | Value |
---|---|
Filename | SRR1546774_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1787289 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8677 | 0.48548388089447203 | No Hit |
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5388 | 0.3014621586100513 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 2920 | 0.16337592857114883 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTACGA | 40 | 8.3164196E-9 | 44.0 | 2 |
GTAATCG | 25 | 4.443835E-5 | 44.0 | 1 |
CCGCGTA | 20 | 7.857656E-4 | 44.0 | 17 |
GCGTCTA | 25 | 4.443835E-5 | 44.0 | 20 |
CGTTTTT | 12520 | 0.0 | 43.156548 | 1 |
CGGTCTA | 225 | 0.0 | 42.044445 | 31 |
CGACGGT | 225 | 0.0 | 41.066666 | 28 |
GAGCGAT | 1280 | 0.0 | 40.90625 | 7 |
CGCGTAA | 55 | 7.8216544E-11 | 40.0 | 31 |
CGAGACC | 200 | 0.0 | 39.6 | 6 |
GTCGTAC | 45 | 2.3521352E-8 | 39.11111 | 9 |
CGACACG | 80 | 0.0 | 38.5 | 13 |
CGAGGTA | 80 | 0.0 | 38.5 | 6 |
GTTGCGA | 80 | 0.0 | 38.5 | 2 |
TCGATTG | 75 | 0.0 | 38.13333 | 1 |
GTTTTTA | 5735 | 0.0 | 37.90061 | 2 |
AGCGATC | 165 | 0.0 | 37.333332 | 8 |
GTAGCGA | 95 | 0.0 | 37.05263 | 2 |
TCACGAC | 250 | 0.0 | 36.96 | 25 |
GACGGTC | 250 | 0.0 | 36.96 | 29 |