##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546767_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2086167 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.476245669689913 31.0 31.0 33.0 30.0 34.0 2 31.87470657909937 31.0 31.0 34.0 30.0 34.0 3 31.956759933408975 31.0 31.0 34.0 30.0 34.0 4 35.68314569255482 37.0 35.0 37.0 33.0 37.0 5 35.576262111326656 37.0 35.0 37.0 33.0 37.0 6 35.62167458309905 37.0 35.0 37.0 33.0 37.0 7 36.02364815472587 37.0 35.0 37.0 35.0 37.0 8 21.981390751555363 35.0 0.0 37.0 0.0 37.0 9 29.88210291889384 37.0 18.0 39.0 17.0 39.0 10 34.29208304033186 35.0 32.0 39.0 27.0 39.0 11 35.957535997837184 37.0 35.0 39.0 32.0 39.0 12 36.57730756933649 38.0 35.0 39.0 32.0 39.0 13 36.781527557477425 39.0 35.0 39.0 33.0 39.0 14 37.96327571090905 40.0 37.0 41.0 33.0 41.0 15 38.158675216317775 40.0 37.0 41.0 33.0 41.0 16 38.16785473070948 40.0 37.0 41.0 33.0 41.0 17 38.11212141693354 40.0 37.0 41.0 33.0 41.0 18 38.02067475901977 40.0 37.0 41.0 33.0 41.0 19 37.97347383982203 40.0 37.0 41.0 33.0 41.0 20 37.822960482070705 40.0 36.0 41.0 33.0 41.0 21 37.738157587575685 40.0 36.0 41.0 33.0 41.0 22 37.71186918401067 40.0 35.0 41.0 33.0 41.0 23 37.52441822730395 39.0 35.0 41.0 33.0 41.0 24 37.333747010665974 39.0 35.0 41.0 33.0 41.0 25 37.20452053934321 39.0 35.0 41.0 32.0 41.0 26 37.143479884400435 39.0 35.0 41.0 32.0 41.0 27 37.02747431054178 39.0 35.0 41.0 32.0 41.0 28 37.01703075544767 39.0 35.0 41.0 32.0 41.0 29 36.91083360056985 39.0 35.0 41.0 32.0 41.0 30 36.77927845661445 39.0 35.0 41.0 31.0 41.0 31 36.60770590273933 39.0 35.0 41.0 31.0 41.0 32 36.17704862554148 39.0 35.0 41.0 30.0 41.0 33 35.81455032123507 39.0 35.0 41.0 27.0 41.0 34 35.526924258700284 39.0 35.0 41.0 24.0 41.0 35 35.24837321269103 39.0 35.0 41.0 23.0 41.0 36 35.094244612248204 39.0 35.0 41.0 22.0 41.0 37 35.053331780245784 39.0 35.0 41.0 22.0 41.0 38 34.94066342723281 39.0 35.0 41.0 21.0 41.0 39 34.82675883570203 39.0 34.0 40.0 20.0 41.0 40 34.75338168037362 39.0 34.0 40.0 20.0 41.0 41 34.72417021264357 38.0 34.0 40.0 19.0 41.0 42 34.46897539842208 38.0 34.0 40.0 18.0 41.0 43 34.52340584430681 38.0 34.0 40.0 18.0 41.0 44 34.34374429276276 38.0 34.0 40.0 18.0 41.0 45 34.17235532917547 38.0 33.0 40.0 18.0 41.0 46 34.25171714440886 38.0 34.0 40.0 18.0 41.0 47 34.13926785343647 38.0 33.0 40.0 18.0 41.0 48 34.13050489246547 38.0 33.0 40.0 18.0 41.0 49 34.041841808445824 38.0 33.0 40.0 18.0 41.0 50 33.58897873468423 37.0 33.0 40.0 16.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 2.0 13 4.0 14 9.0 15 34.0 16 91.0 17 309.0 18 821.0 19 1888.0 20 3559.0 21 6049.0 22 9623.0 23 14655.0 24 22233.0 25 34121.0 26 46450.0 27 50215.0 28 47674.0 29 45497.0 30 49774.0 31 58604.0 32 73290.0 33 94639.0 34 134573.0 35 192080.0 36 193638.0 37 290245.0 38 345801.0 39 370285.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.774461967809863 23.102896364480888 28.321222605860413 18.801419061848836 2 35.17196849533139 24.15055937516028 27.952460181759182 12.725011947749149 3 26.020448027411035 24.13291936839189 37.136480444758256 12.710152159438817 4 22.97548566342004 26.52069561065821 36.75640540762077 13.74741331830098 5 21.35020830067775 30.394354814355708 35.4814355705943 12.774001314372244 6 18.725825880670147 38.323202313141756 32.613784035506264 10.33718777068183 7 82.00781624865124 3.2260121073720365 13.067458166100796 1.6987134778759323 8 50.80341123217844 40.01410241845452 7.61219020337298 1.5702961459940645 9 76.82242121555944 5.353598249804546 14.727152715961859 3.096827818674152 10 33.23899764496323 34.18695626956039 20.884809317758357 11.689236767718022 11 25.937568756480182 24.6797595782121 34.49479356158927 14.887878103718446 12 24.859994429976123 23.20686694785221 35.10438042591988 16.828758196251787 13 20.77110796978382 27.98783606489797 35.60189572550999 15.639160239808222 14 17.682237328075846 30.72884385574117 34.63970046501551 16.949218351167474 15 16.494940242080332 25.312403081824225 42.28443839826821 15.90821827782723 16 18.58748604498106 24.6484102183574 39.788185701336474 16.975918035325073 17 18.99905424637625 23.71075757597546 35.117993909404184 22.172194268244105 18 21.040453616608833 24.15223709319532 36.96142255150235 17.845886738693498 19 22.699237405250873 25.9067466794365 33.34646746880763 18.047548446505 20 23.959922671579026 24.87135497781338 33.14600413102115 18.022718219586448 21 21.440373661360766 26.835099970424224 34.19754986058163 17.52697650763338 22 21.209423790137606 24.234061798504147 33.55306646112224 21.003447950236005 23 18.41650260981024 28.26954889038126 33.46884501576336 19.84510348404514 24 18.065523996880405 25.78331456685874 37.44000360469704 18.71115783156382 25 17.834382386453242 27.665714202170776 35.87406952559407 18.625833885781915 26 18.096825421934103 29.13247117800253 33.82849982767439 18.94220357238898 27 18.559635925599434 27.968805948900545 34.519575853706826 18.951982271793195 28 17.21041508182231 27.35835625815191 37.67445271639327 17.75677594363251 29 18.146102397363205 25.52485011986097 36.64634710452231 19.682700378253514 30 18.818963199015226 27.32341178822213 34.71447875457717 19.143146258185467 31 21.8271595706384 26.62576869445255 31.941354647063253 19.605717087845793 32 21.850503818725922 27.519848602724515 32.0285480500842 18.60109952846536 33 20.775853515082925 28.204213756616802 30.884631958994653 20.135300769305623 34 18.601722680878378 28.469964293366733 32.262182270163414 20.666130755591475 35 19.151678652763657 28.68015839575643 31.262262321281085 20.90590063019883 36 21.89656916248795 28.4459010232642 29.878001137972177 19.779528676275675 37 20.23639526461688 30.59213380328612 29.83049775018011 19.340973181916883 38 20.509048412710968 30.310948260613845 28.991111449850372 20.18889187682482 39 21.193605305807253 29.798477303111397 28.967239918951837 20.04067747212951 40 22.960338266303705 27.63930212681919 29.006498520971714 20.393861085905396 41 20.187837311202795 27.245661540998395 29.551421338751883 23.015079809046927 42 21.6481230888994 28.17559668041916 28.536977145166233 21.639303085515206 43 21.448426707928945 27.509494685708287 29.629842673189632 21.412235933173136 44 20.795219174687357 29.221534038262515 29.80825600251562 20.174990784534508 45 19.432384847425926 30.501153550986093 29.014024284728883 21.052437316859102 46 21.133303326147907 29.54451872740773 28.868638033292637 20.453539913151726 47 20.600412143419007 28.31767543058633 29.921573872082146 21.16033855391251 48 21.544488049135087 26.71128437943846 30.33266272546733 21.41156484595912 49 21.085272655544834 26.003047694647645 30.756214627112787 22.15546502269473 50 19.670812547605248 28.23005061435638 30.660057416304635 21.439079421733734 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 890.0 1 1366.5 2 1843.0 3 21584.0 4 41325.0 5 31246.5 6 21168.0 7 21578.0 8 21988.0 9 22594.5 10 23201.0 11 23137.0 12 23073.0 13 22528.0 14 21983.0 15 21114.0 16 20245.0 17 19297.0 18 18349.0 19 17543.5 20 16738.0 21 16760.5 22 16783.0 23 17818.5 24 18854.0 25 20677.0 26 22500.0 27 25998.5 28 29497.0 29 35024.0 30 40551.0 31 46960.5 32 53370.0 33 59931.0 34 66492.0 35 73492.5 36 80493.0 37 88423.0 38 96353.0 39 108131.5 40 119910.0 41 135494.0 42 151078.0 43 162729.5 44 174381.0 45 181337.0 46 188293.0 47 186770.5 48 185248.0 49 174307.5 50 163367.0 51 145870.5 52 128374.0 53 114163.5 54 99953.0 55 88244.5 56 76536.0 57 66824.5 58 57113.0 59 49548.0 60 41983.0 61 34760.0 62 27537.0 63 21798.0 64 16059.0 65 12255.0 66 8451.0 67 6562.5 68 4674.0 69 3783.0 70 2892.0 71 2444.0 72 1996.0 73 1567.5 74 1139.0 75 957.0 76 775.0 77 594.5 78 414.0 79 305.5 80 197.0 81 132.5 82 68.0 83 44.0 84 20.0 85 12.0 86 4.0 87 3.5 88 3.0 89 3.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2086167.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.78666732927035 #Duplication Level Percentage of deduplicated Percentage of total 1 73.46256307189236 27.75905431953138 2 7.571513778072283 5.722045446220085 3 3.7581328973188306 4.260219527105207 4 2.592091379378789 3.917859785586233 5 2.0067938893112065 3.7915026546907566 6 1.5728255984557324 3.5659102593484384 7 1.2975839802773579 3.4321961936171714 8 1.055357895412629 3.1902766165820724 9 0.8885197941982436 3.0216781690956704 >10 5.712934394561228 37.13297473600346 >50 0.06612016653608532 1.6038509638401592 >100 0.013939429375883954 1.0130769260368575 >500 0.0010824834728592571 0.2698093350864217 >1k 2.706208682148143E-4 0.16100617702996814 >5k 1.3531043410740714E-4 0.44032556258560995 >10k+ 1.3531043410740714E-4 0.7182133276405089 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14047 0.6733401496620357 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8612 0.4128145062212181 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06303426331640756 0.0 2 0.0 0.0 0.0 0.18474072305812525 0.0 3 0.0 0.0 0.0 0.29614120058461285 0.0 4 0.0 0.0 0.0 0.40878798293712826 0.0 5 0.0 0.0 0.0 0.6429974206283582 0.0 6 0.0 0.0 0.0 1.0253733282138966 0.0 7 0.0 0.0 0.0 1.3105374593692642 0.0 8 0.0 0.0 0.0 2.014460012069983 0.0 9 0.0 0.0 0.0 2.735878767136092 0.0 10 0.0 0.0 0.0 3.764032313808051 0.0 11 0.0 0.0 0.0 4.26960065996634 0.0 12 0.0 0.0 0.0 4.8088192364273805 0.0 13 0.0 0.0 0.0 5.103378588578958 0.0 14 0.0 0.0 0.0 5.237116683371945 0.0 15 0.0 0.0 0.0 5.371573800179947 0.0 16 0.0 0.0 0.0 5.606598129488195 0.0 17 0.0 0.0 0.0 5.868945295367054 0.0 18 0.0 0.0 0.0 6.3322830818434 0.0 19 0.0 0.0 0.0 6.5069574966913 0.0 20 0.0 0.0 0.0 6.732346930998333 0.0 21 0.0 0.0 0.0 6.928160593087706 0.0 22 0.0 0.0 0.0 7.136197629432352 0.0 23 0.0 0.0 0.0 7.362258150953399 0.0 24 0.0 0.0 0.0 7.540479741075379 0.0 25 0.0 0.0 0.0 7.693056212661786 0.0 26 0.0 0.0 0.0 7.845249205840185 0.0 27 0.0 0.0 0.0 8.018533511459054 0.0 28 0.0 0.0 0.0 8.181991182872704 0.0 29 0.0 0.0 0.0 8.352255596028506 0.0 30 0.0 0.0 0.0 8.58219883643064 0.0 31 0.0 0.0 0.0 8.77245206160389 0.0 32 0.0 0.0 0.0 8.954220826999947 0.0 33 0.0 0.0 0.0 9.135797853192003 0.0 34 0.0 0.0 0.0 9.31751868378706 0.0 35 0.0 0.0 0.0 9.51405136789145 0.0 36 0.0 0.0 0.0 9.69682676410853 0.0 37 0.0 0.0 0.0 9.89297596980491 0.0 38 0.0 0.0 0.0 10.086536696247233 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGCGA 20 7.85796E-4 44.0 2 CGCTCGA 30 2.5287136E-6 44.0 2 CGTTTTT 21125 0.0 43.458466 1 GAGCGAT 1440 0.0 42.013885 7 GTTTTTA 9195 0.0 39.597607 2 CGAGATT 335 0.0 39.402985 6 CGACGGT 175 0.0 38.971428 28 TAGCGCG 75 0.0 38.13333 1 TCACGAC 180 0.0 37.888885 25 CTAACGG 35 7.2930616E-6 37.714287 2 TCGAACG 35 7.2930616E-6 37.714287 1 AGCGATC 135 0.0 37.48148 8 CGGTCTA 185 0.0 36.864864 31 TCGGGTA 30 1.3014591E-4 36.666664 5 AGAGCGA 920 0.0 36.108696 6 CTCGTAG 55 3.426976E-9 36.0 1 TAAGCGA 110 0.0 36.0 2 GTTTTTT 15800 0.0 35.770885 2 ACGAGAT 400 0.0 35.75 5 GCGATAT 265 0.0 35.698112 9 >>END_MODULE