SRR1546763_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546763_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3287594
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16269	0.49486037509497827	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10014	0.30459965555357504	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4884	0.14855848988652492	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22980	0.0	43.100086	1
TTCGCGA	100	0.0	41.8	2
GACGGTC	470	0.0	41.659576	29
GAGCGAT	2160	0.0	40.84259	7
CGACGGT	465	0.0	40.68817	28
AGCGATA	560	0.0	40.07143	8
TTTAGCG	275	0.0	40.0	1
CGGTCTA	480	0.0	39.875	31
CACGACG	475	0.0	39.36842	26
TATGCGA	205	0.0	38.634148	2
CGCTCGA	40	4.1276508E-7	38.500004	2
GTTGCGA	115	0.0	38.260868	2
TTTGCGA	260	0.0	38.076923	2
GTTTTTA	10910	0.0	37.97067	2
CGTAAGA	215	0.0	37.860466	2
AGCGATC	280	0.0	37.714287	8
TCCGTCG	35	7.294342E-6	37.714287	15
TACTCGC	35	7.294342E-6	37.714287	12
TTAGCGA	275	0.0	37.6	2
TCACGAC	510	0.0	37.52941	25