##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546763_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3287594 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.432291213574427 31.0 31.0 33.0 30.0 34.0 2 31.823426493660712 31.0 31.0 34.0 30.0 34.0 3 31.92653229078773 31.0 31.0 34.0 30.0 34.0 4 35.64500634810746 37.0 35.0 37.0 33.0 37.0 5 35.52244589812489 37.0 35.0 37.0 33.0 37.0 6 35.5714939253448 37.0 35.0 37.0 33.0 37.0 7 35.99505200459667 37.0 35.0 37.0 35.0 37.0 8 22.048674197604694 35.0 0.0 37.0 0.0 37.0 9 29.920674511512065 37.0 18.0 39.0 17.0 39.0 10 34.27388661738645 35.0 32.0 39.0 27.0 39.0 11 35.87905136704836 37.0 35.0 39.0 32.0 39.0 12 36.3732459056684 37.0 35.0 39.0 32.0 39.0 13 36.507339714088786 39.0 35.0 39.0 32.0 39.0 14 37.64227638814282 39.0 36.0 41.0 33.0 41.0 15 37.901371337215 40.0 36.0 41.0 33.0 41.0 16 37.94716470464419 40.0 36.0 41.0 33.0 41.0 17 37.907774500135965 40.0 36.0 41.0 33.0 41.0 18 37.83275580865521 39.0 36.0 41.0 33.0 41.0 19 37.80962795284333 39.0 36.0 41.0 33.0 41.0 20 37.6741811793062 39.0 35.0 41.0 33.0 41.0 21 37.58418284009522 39.0 35.0 41.0 33.0 41.0 22 37.546377381148645 39.0 35.0 41.0 33.0 41.0 23 37.39451039270664 39.0 35.0 41.0 32.0 41.0 24 37.24447331391893 39.0 35.0 41.0 32.0 41.0 25 37.107199064118014 39.0 35.0 41.0 32.0 41.0 26 37.049735460035514 39.0 35.0 41.0 32.0 41.0 27 36.91998951208696 39.0 35.0 41.0 32.0 41.0 28 36.92757104435645 39.0 35.0 41.0 32.0 41.0 29 36.85780695548173 39.0 35.0 41.0 31.0 41.0 30 36.735716454039036 39.0 35.0 40.0 31.0 41.0 31 36.62894749169149 39.0 35.0 41.0 31.0 41.0 32 36.276295369805396 39.0 35.0 41.0 30.0 41.0 33 36.056281888822035 39.0 35.0 41.0 29.0 41.0 34 35.86954623959041 39.0 35.0 41.0 28.0 41.0 35 35.673804003779054 39.0 35.0 41.0 27.0 41.0 36 35.537377790566595 39.0 35.0 41.0 25.0 41.0 37 35.505487599746196 39.0 35.0 41.0 25.0 41.0 38 35.42060211814476 39.0 35.0 40.0 25.0 41.0 39 35.33340947817766 38.0 35.0 40.0 24.0 41.0 40 35.281908289162224 38.0 35.0 40.0 24.0 41.0 41 35.28261305988513 38.0 35.0 40.0 24.0 41.0 42 35.034901511561344 38.0 34.0 40.0 23.0 41.0 43 35.07593121291741 38.0 35.0 40.0 24.0 41.0 44 34.89562306051173 38.0 34.0 40.0 23.0 41.0 45 34.706437595396515 38.0 34.0 40.0 23.0 41.0 46 34.78255648355606 38.0 34.0 40.0 23.0 41.0 47 34.658076696818405 38.0 34.0 40.0 23.0 41.0 48 34.67518069445315 38.0 34.0 40.0 23.0 41.0 49 34.60735023850268 38.0 34.0 40.0 23.0 41.0 50 34.13605572950918 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 2.0 13 6.0 14 9.0 15 51.0 16 142.0 17 390.0 18 1178.0 19 2593.0 20 4930.0 21 8379.0 22 13030.0 23 19435.0 24 29565.0 25 44028.0 26 58654.0 27 65106.0 28 64865.0 29 67081.0 30 77947.0 31 96395.0 32 123454.0 33 160269.0 34 237856.0 35 359163.0 36 306824.0 37 450406.0 38 540946.0 39 554885.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.492207979452452 23.948790513670485 29.391737544234473 16.16726396264259 2 32.59617823855378 25.408916064453212 29.228092033262016 12.766813663730984 3 25.79917106552695 24.880444483108317 36.29447553438776 13.025908916976976 4 23.695565815000272 27.14282846361199 35.13058485932265 14.031020862065086 5 21.14646759910135 31.306420439993506 34.24297525789377 13.304136703011382 6 19.32574399393599 39.04448055325566 31.111992539224737 10.517782913583613 7 83.94804832956868 3.4879915220675057 10.602282398617348 1.961677749746471 8 52.14898798330937 39.736719315097915 6.1037950549855005 2.010497646607215 9 78.96863177144137 5.236291342544122 12.636688106864776 3.1583887791497367 10 39.953412738920925 32.197710544550205 17.40360883977766 10.445267876751204 11 31.18694096655487 23.797981137573558 31.11159711326885 13.903480782602717 12 29.64091673120221 22.517105214329995 31.279683561899674 16.56229449256812 13 20.66371334173259 32.064573666943055 32.59706034260921 14.674652648715139 14 16.327989405017775 34.97223197268276 31.8052350746473 16.894543547652173 15 14.985396615275487 25.10337347008177 44.29199590947057 15.619234005172173 16 16.40108237209339 23.234559985204985 42.78025206275471 17.584105579946915 17 17.514480194330563 23.46415037866598 32.81241540165848 26.208954025344976 18 20.18956720324955 24.488455691304946 36.39248033668391 18.92949676876159 19 23.73936684395944 26.82667020319419 30.435783737286293 18.99817921556007 20 25.05358021702193 25.17302927307934 30.118408781619628 19.6549817282791 21 20.920010195906187 28.72979449408899 31.659474983833164 18.69072032617166 22 20.97053346611534 24.91992624393401 30.557939940272433 23.551600349678214 23 17.50867047451723 29.880514443085126 30.492116727308787 22.11869835508886 24 18.178278704730573 25.382513777552823 37.79298782027221 18.64621969744439 25 17.18147070471597 27.135893300693454 35.53455809932735 20.14807789526322 26 17.201728680609587 30.912789109604166 31.96948893324419 19.915993276542054 27 18.116713925137958 29.660870533283614 32.45589327635955 19.76652226521888 28 16.401903641386376 27.819858534843416 37.48966569472994 18.288572129040265 29 16.773269448721468 24.446418870456633 36.72990034657564 22.050411334246263 30 18.39022701708301 27.721823315166045 33.19786445649919 20.690085211251755 31 22.85768863186878 25.687478441681062 29.818067559437083 21.63676536701308 32 23.286208698519342 26.265560771798462 29.92458922847529 20.5236413012069 33 21.62815724812735 27.253669400783675 28.92403989057043 22.194133460518543 34 17.799795230189616 27.391247216049187 31.776399397249172 23.032558156512025 35 18.119056063492025 26.631694789563433 31.31022261264621 23.939026534298335 36 23.346283026432097 25.890940304672654 30.67799734395427 20.084779324940975 37 19.098860747403723 30.555384880249814 30.63623427953695 19.709520092809512 38 20.051928553221597 30.470489969260196 28.72146013163426 20.75612134588395 39 19.56211746340941 31.232567038387344 28.98350587085875 20.221809627344495 40 22.062639121497362 26.999410511151922 29.071260015683205 21.86669035166751 41 18.057947544617736 26.630903937651667 29.27672942583543 26.034419091895167 42 21.17031482597912 27.489130348820446 27.73979998746804 23.600754837732396 43 20.525740100511193 27.510787524250258 29.389182484211858 22.574289891026687 44 20.349623463237858 29.641950922163744 29.481012558120014 20.527413056478387 45 18.108166641014677 31.530687791740707 27.90803852300497 22.453107044239648 46 21.37274249800918 29.810371961988007 28.74825784449053 20.06862769551228 47 20.473300535285073 27.24858969811966 29.224198608465645 23.053911158129623 48 21.243529462579623 25.070766037412163 30.731410265379484 22.954294234628726 49 20.51235645277367 24.237786052657352 31.51772998734029 23.73212750722869 50 19.05384302319569 28.329714678880663 30.53351478315145 22.0829275147722 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1618.0 1 2242.0 2 2866.0 3 24137.5 4 45409.0 5 34002.5 6 22596.0 7 23383.5 8 24171.0 9 25399.0 10 26627.0 11 26917.0 12 27207.0 13 26579.5 14 25952.0 15 25112.5 16 24273.0 17 23296.5 18 22320.0 19 21719.5 20 21119.0 21 21810.0 22 22501.0 23 24054.0 24 25607.0 25 28393.0 26 31179.0 27 36894.5 28 42610.0 29 51619.5 30 60629.0 31 70992.5 32 81356.0 33 90828.5 34 100301.0 35 110943.5 36 121586.0 37 136008.0 38 150430.0 39 176853.0 40 203276.0 41 232550.0 42 261824.0 43 283478.0 44 305132.0 45 318993.5 46 332855.0 47 329710.0 48 326565.0 49 302725.0 50 278885.0 51 242078.5 52 205272.0 53 178564.5 54 151857.0 55 131322.5 56 110788.0 57 95431.0 58 80074.0 59 69213.5 60 58353.0 61 48712.0 62 39071.0 63 31130.5 64 23190.0 65 17785.0 66 12380.0 67 9595.5 68 6811.0 69 5685.5 70 4560.0 71 3653.5 72 2747.0 73 2224.5 74 1702.0 75 1377.0 76 1052.0 77 800.5 78 549.0 79 367.5 80 186.0 81 121.5 82 57.0 83 46.0 84 35.0 85 21.5 86 8.0 87 5.5 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3287594.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.750597126407207 #Duplication Level Percentage of deduplicated Percentage of total 1 77.8183276942602 23.151417162826725 2 7.290080876312399 4.337685183401916 3 2.8558152870189755 2.548866302146095 4 1.6480437387692535 1.961211412752878 5 1.0966236213040719 1.6312603778359598 6 0.8396842964738941 1.4988665530659298 7 0.6476873469635293 1.3488359726368437 8 0.564411284282155 1.3433258185821189 9 0.4851859075368562 1.2991113419885343 >10 5.876406485789549 39.44708920264189 >50 0.7763143323934267 15.499701341621552 >100 0.09836336032107795 4.1398980663601135 >500 0.0018552880631292092 0.4063069644017251 >1k 9.822113275389332E-4 0.5330627890000966 >5k 0.0 0.0 >10k+ 2.182691838975407E-4 0.8533615107375772 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16269 0.49486037509497827 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10014 0.30459965555357504 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4884 0.14855848988652492 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08230943358577732 0.0 2 0.0 0.0 0.0 0.2542588896317489 0.0 3 0.0 0.0 0.0 0.3944830170635425 0.0 4 0.0 0.0 0.0 0.55989273614686 0.0 5 0.0 0.0 0.0 0.9120955933123129 0.0 6 0.0 0.0 0.0 1.4859803248211305 0.0 7 0.0 0.0 0.0 1.8933907289038732 0.0 8 0.0 0.0 0.0 2.963109191706762 0.0 9 0.0 0.0 0.0 3.8836608169986926 0.0 10 0.0 0.0 0.0 5.042715128449559 0.0 11 0.0 0.0 0.0 5.703137309533963 0.0 12 0.0 0.0 0.0 6.3679700108955055 0.0 13 0.0 0.0 0.0 6.708431758909403 0.0 14 0.0 3.04173812216472E-5 0.0 6.85166720708214 0.0 15 0.0 3.04173812216472E-5 0.0 6.999161088625907 0.0 16 0.0 3.04173812216472E-5 0.0 7.275016318925025 0.0 17 0.0 3.04173812216472E-5 0.0 7.5943684043710995 0.0 18 0.0 3.04173812216472E-5 0.0 8.100239871468315 0.0 19 0.0 3.04173812216472E-5 0.0 8.308142672118272 0.0 20 0.0 3.04173812216472E-5 0.0 8.56331408318667 0.0 21 0.0 3.04173812216472E-5 0.0 8.821527232377234 0.0 22 3.04173812216472E-5 3.04173812216472E-5 0.0 9.09513157646595 0.0 23 3.04173812216472E-5 3.04173812216472E-5 0.0 9.42290927651042 0.0 24 3.04173812216472E-5 3.04173812216472E-5 0.0 9.660681945520038 0.0 25 3.04173812216472E-5 3.04173812216472E-5 0.0 9.868250154976558 0.0 26 3.04173812216472E-5 3.04173812216472E-5 0.0 10.067666506265676 0.0 27 3.04173812216472E-5 3.04173812216472E-5 0.0 10.278398123369248 0.0 28 3.04173812216472E-5 3.04173812216472E-5 0.0 10.492597321932088 0.0 29 3.04173812216472E-5 3.04173812216472E-5 0.0 10.721305611337653 0.0 30 3.04173812216472E-5 3.04173812216472E-5 0.0 11.007320246964802 0.0 31 3.04173812216472E-5 3.04173812216472E-5 0.0 11.25360978271648 0.0 32 3.04173812216472E-5 3.04173812216472E-5 0.0 11.48207473307227 0.0 33 3.04173812216472E-5 3.04173812216472E-5 0.0 11.707315441018569 0.0 34 6.08347624432944E-5 3.04173812216472E-5 0.0 11.937635851628881 0.0 35 6.08347624432944E-5 3.04173812216472E-5 0.0 12.192716010553614 0.0 36 6.08347624432944E-5 3.04173812216472E-5 0.0 12.429424071220472 0.0 37 6.08347624432944E-5 3.04173812216472E-5 0.0 12.67331063385564 0.0 38 6.08347624432944E-5 3.04173812216472E-5 0.0 12.917379700778138 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 22980 0.0 43.100086 1 TTCGCGA 100 0.0 41.8 2 GACGGTC 470 0.0 41.659576 29 GAGCGAT 2160 0.0 40.84259 7 CGACGGT 465 0.0 40.68817 28 AGCGATA 560 0.0 40.07143 8 TTTAGCG 275 0.0 40.0 1 CGGTCTA 480 0.0 39.875 31 CACGACG 475 0.0 39.36842 26 TATGCGA 205 0.0 38.634148 2 CGCTCGA 40 4.1276508E-7 38.500004 2 GTTGCGA 115 0.0 38.260868 2 TTTGCGA 260 0.0 38.076923 2 GTTTTTA 10910 0.0 37.97067 2 CGTAAGA 215 0.0 37.860466 2 AGCGATC 280 0.0 37.714287 8 TCCGTCG 35 7.294342E-6 37.714287 15 TACTCGC 35 7.294342E-6 37.714287 12 TTAGCGA 275 0.0 37.6 2 TCACGAC 510 0.0 37.52941 25 >>END_MODULE