##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546762_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2143080 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.41608992664763 31.0 31.0 33.0 30.0 34.0 2 31.81021333781287 31.0 31.0 34.0 30.0 34.0 3 31.94778449707897 31.0 31.0 34.0 30.0 34.0 4 35.651635029956886 37.0 35.0 37.0 33.0 37.0 5 35.52333510648226 37.0 35.0 37.0 33.0 37.0 6 35.57647218022659 37.0 35.0 37.0 33.0 37.0 7 35.98133060828341 37.0 35.0 37.0 35.0 37.0 8 22.111697650111054 35.0 0.0 37.0 0.0 37.0 9 29.949076096086007 37.0 18.0 39.0 17.0 39.0 10 34.24823525020064 35.0 32.0 39.0 27.0 39.0 11 35.85502594396849 37.0 35.0 39.0 32.0 39.0 12 36.315359202642924 37.0 35.0 39.0 32.0 39.0 13 36.44537441439424 39.0 35.0 39.0 32.0 39.0 14 37.55553642421188 39.0 36.0 41.0 33.0 41.0 15 37.80746449035967 40.0 36.0 41.0 33.0 41.0 16 37.865743229370814 40.0 36.0 41.0 33.0 41.0 17 37.82591363831495 40.0 36.0 41.0 33.0 41.0 18 37.78486337420908 39.0 36.0 41.0 33.0 41.0 19 37.79673553950389 40.0 36.0 41.0 33.0 41.0 20 37.685794744013286 39.0 36.0 41.0 33.0 41.0 21 37.58972273550217 39.0 35.0 41.0 33.0 41.0 22 37.54644670287623 39.0 35.0 41.0 33.0 41.0 23 37.42541482352502 39.0 35.0 41.0 32.0 41.0 24 37.32631073035071 39.0 35.0 41.0 32.0 41.0 25 37.184436418612464 39.0 35.0 41.0 32.0 41.0 26 37.1299615506654 39.0 35.0 41.0 32.0 41.0 27 37.020250293969426 39.0 35.0 41.0 32.0 41.0 28 37.035552102581335 39.0 35.0 41.0 32.0 41.0 29 36.96395328219199 39.0 35.0 41.0 31.0 41.0 30 36.86189782929242 39.0 35.0 41.0 31.0 41.0 31 36.801006495324486 39.0 35.0 41.0 31.0 41.0 32 36.55376700823114 39.0 35.0 41.0 30.0 41.0 33 36.440122627246765 39.0 35.0 41.0 30.0 41.0 34 36.354619052951826 39.0 35.0 41.0 30.0 41.0 35 36.207087929522 39.0 35.0 41.0 30.0 41.0 36 36.07803348451761 39.0 35.0 41.0 30.0 41.0 37 36.063550124120425 39.0 35.0 41.0 29.0 41.0 38 35.97716324168953 39.0 35.0 41.0 29.0 41.0 39 35.90240821621218 39.0 35.0 40.0 29.0 41.0 40 35.83996117737089 39.0 35.0 40.0 29.0 41.0 41 35.85001633163484 39.0 35.0 40.0 29.0 41.0 42 35.61283386527801 38.0 35.0 40.0 27.0 41.0 43 35.649118558336596 38.0 35.0 40.0 28.0 41.0 44 35.45977518338093 38.0 35.0 40.0 27.0 41.0 45 35.23770741176251 38.0 34.0 40.0 26.0 41.0 46 35.32011824103627 38.0 34.0 40.0 26.0 41.0 47 35.19440478190268 38.0 34.0 40.0 26.0 41.0 48 35.222299214215056 38.0 34.0 40.0 26.0 41.0 49 35.15445433674898 38.0 34.0 40.0 26.0 41.0 50 34.68489463762435 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 5.0 13 6.0 14 8.0 15 25.0 16 79.0 17 250.0 18 628.0 19 1379.0 20 2705.0 21 4457.0 22 6904.0 23 10295.0 24 14936.0 25 21925.0 26 28505.0 27 33222.0 28 36549.0 29 41072.0 30 49878.0 31 63312.0 32 81795.0 33 107678.0 34 162078.0 35 244525.0 36 204841.0 37 303180.0 38 360190.0 39 362649.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.054603654553258 24.853015286410212 30.556815424529184 13.535565634507343 2 30.59428486104112 25.81854153834668 30.279830897586653 13.307342703025551 3 27.241633536778842 25.599837616887843 33.40570580659612 13.7528230397372 4 25.109281968008663 27.756313343412288 32.57442559307165 14.5599790955074 5 22.362860929130036 32.17406723034138 31.194495772439666 14.26857606808892 6 19.832624073762993 40.801136681785096 28.081826156746363 11.284413087705545 7 86.97276816544412 3.5331858820016047 7.501399854415141 1.992646098139127 8 54.06069768744051 39.7094368852306 4.2724956604513125 1.9573697668775782 9 81.87067211676651 5.266438957015137 9.474587976183809 3.38830095003453 10 42.358708027698455 30.2124045765907 15.571000615935942 11.857886779774903 11 33.51461448009407 24.22294081415533 27.247512925322432 15.01493178042817 12 31.373397166694666 22.78976986393415 28.72155962446572 17.115273344905464 13 21.716174851148814 32.84357093528939 29.63057841984434 15.809675793717453 14 17.345642719823807 36.312736808705225 28.90568714187058 17.435933329600388 15 15.452806241484218 25.705993243369356 42.70554528995651 16.13565522518991 16 17.310926330328314 22.989995707113124 40.36746178397447 19.331616178584092 17 17.71851727420348 22.899705097336543 30.755594751479183 28.626182876980792 18 21.368357690800156 24.12518431416466 34.103719879799165 20.402738115236016 19 24.6239057804655 26.872398603878526 28.219105213057844 20.28459040259813 20 26.933525580006346 25.158370196166263 27.53975586539 20.368348358437387 21 22.29436138641581 28.417837878194003 29.137689680273255 20.150111055116934 22 21.838848759728986 25.1328928458107 28.260167609235303 24.768090785225002 23 19.022015043768782 29.62441906041772 27.665136159172782 23.688429736640725 24 19.390643373089198 25.82260111615059 35.176568303563094 19.610187207197118 25 18.37224928607425 27.16524814752599 32.8757209250238 21.586781641375964 26 17.806988073240383 31.48491890176755 29.360873135860537 21.34721988913153 27 18.849273008940404 30.3449241278907 29.828657819586763 20.977145043582134 28 17.038887955652612 28.341592474382665 35.582712731209284 19.036806838755435 29 17.587210930063275 25.162803068480876 34.72254885491909 22.527437146536762 30 19.36320622655244 28.069694085148477 31.371530694141143 21.19556899415794 31 24.275995296489164 26.79792634899304 26.789433898874513 22.136644455643278 32 24.195317020363216 27.283489183791552 27.889019541967635 20.632174253877597 33 22.94422046773802 27.224461989286446 27.645631520988484 22.185686021987046 34 19.071149933740227 28.570328685816676 29.169699684566137 23.188821695876964 35 19.227980290049835 26.731059969763145 30.797917016630272 23.24304272355675 36 24.775743322694442 26.068415551449313 28.41555144931594 20.740289676540307 37 20.299288873957106 30.270498534819048 29.5056180823861 19.92459450883775 38 20.984097653844 30.16462287922056 27.094415514119863 21.756863952815575 39 20.64645276891203 28.9936913227691 28.11084980495362 22.24900610336525 40 22.08620303488437 26.080081004908823 28.31098232450492 23.522733635701886 41 18.371362711611326 25.86944957724397 28.076600033596506 27.682587677548202 42 21.87636485805476 26.903428710080817 26.39322843757583 24.826977994288594 43 21.578849133023496 27.012804001717157 27.709931500457287 23.69841536480206 44 20.48350971498964 29.210295462605224 28.534212441906043 21.771982380499093 45 18.813530059540472 31.23873117195812 27.24336002389085 22.70437874461056 46 21.7292868208373 29.4502771711742 28.155645146238122 20.66479086175038 47 21.33023498889449 27.021109804580323 28.468652593463613 23.180002613061575 48 21.43900367695093 25.396065475857178 29.500158650167048 23.664772197024842 49 21.073781660040687 24.135916531347405 30.660591298504958 24.12971051010695 50 19.632818186908562 28.386761110177876 29.337682214383037 22.642738488530526 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1187.0 1 1665.5 2 2144.0 3 10299.0 4 18454.0 5 13805.5 6 9157.0 7 9580.5 8 10004.0 9 10604.0 10 11204.0 11 11331.0 12 11458.0 13 11352.0 14 11246.0 15 10832.5 16 10419.0 17 10265.0 18 10111.0 19 10051.0 20 9991.0 21 10619.0 22 11247.0 23 12845.5 24 14444.0 25 16710.5 26 18977.0 27 22386.0 28 25795.0 29 30033.5 30 34272.0 31 39427.5 32 44583.0 33 51566.5 34 58550.0 35 68179.5 36 77809.0 37 84836.0 38 91863.0 39 107737.5 40 123612.0 41 147185.5 42 170759.0 43 185170.5 44 199582.0 45 208069.5 46 216557.0 47 215219.5 48 213882.0 49 201179.0 50 188476.0 51 166001.0 52 143526.0 53 124834.5 54 106143.0 55 93877.0 56 81611.0 57 72871.5 58 64132.0 59 57753.5 60 51375.0 61 44663.5 62 37952.0 63 31160.5 64 24369.0 65 19813.5 66 15258.0 67 12238.5 68 9219.0 69 7548.0 70 5877.0 71 4885.0 72 3893.0 73 2948.5 74 2004.0 75 1446.0 76 888.0 77 748.0 78 608.0 79 424.5 80 241.0 81 172.0 82 103.0 83 85.0 84 67.0 85 44.5 86 22.0 87 14.5 88 7.0 89 4.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2143080.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.596185446716 #Duplication Level Percentage of deduplicated Percentage of total 1 77.0028560761116 22.789908083553804 2 6.9079517637338865 4.08898042912874 3 2.702796589083847 2.3997740722583094 4 1.5718971935473471 1.8608864337359885 5 1.149373420226801 1.7008534446279322 6 0.9038408966734492 1.6050145675364087 7 0.7582307241764578 1.570851598688695 8 0.6751190683140346 1.5984759315549033 9 0.562379614068884 1.497986221449174 >10 7.123366429172619 46.37739954603334 >50 0.5930929513814308 11.232004749868766 >100 0.04679658130754795 2.152558434572907 >500 0.001313538401181387 0.259787039748433 >1k 8.20961500738367E-4 0.5532015825843922 >5k 1.641923001476734E-4 0.3123178646582826 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6427 0.2998954775370028 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4073 0.19005356776228605 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3467 0.16177650857644138 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08595106108964667 0.0 2 0.0 0.0 0.0 0.26172611381749633 0.0 3 0.0 0.0 0.0 0.39765197752767045 0.0 4 0.0 0.0 0.0 0.5661944491106258 0.0 5 0.0 0.0 0.0 0.9171846128002688 0.0 6 0.0 0.0 0.0 1.3894954924687832 0.0 7 0.0 0.0 0.0 1.7055359575937437 0.0 8 0.0 0.0 0.0 2.5547343076320064 0.0 9 0.0 0.0 0.0 3.2590943875170315 0.0 10 0.0 0.0 0.0 4.252991022267017 0.0 11 0.0 0.0 0.0 4.89757731862553 0.0 12 0.0 0.0 0.0 5.500027997088303 0.0 13 0.0 0.0 0.0 5.789097933814883 0.0 14 0.0 0.0 0.0 5.906405733803685 0.0 15 0.0 0.0 0.0 6.047791029732908 0.0 16 0.0 0.0 0.0 6.335601097485862 0.0 17 0.0 0.0 0.0 6.67581238217892 0.0 18 0.0 0.0 0.0 7.204210762080743 0.0 19 0.0 0.0 0.0 7.417781884017396 0.0 20 0.0 0.0 0.0 7.671388842227075 0.0 21 0.0 0.0 0.0 7.928682083729958 0.0 22 0.0 0.0 0.0 8.20403344718816 0.0 23 0.0 0.0 0.0 8.52362021016481 0.0 24 0.0 0.0 0.0 8.76108218078653 0.0 25 0.0 0.0 0.0 8.960701420385613 0.0 26 0.0 0.0 0.0 9.148795191966702 0.0 27 0.0 0.0 0.0 9.356393601732087 0.0 28 4.666181383802751E-5 0.0 0.0 9.55549956137895 0.0 29 9.332362767605503E-5 0.0 0.0 9.774950071859193 0.0 30 9.332362767605503E-5 0.0 0.0 10.046708475651865 0.0 31 9.332362767605503E-5 0.0 0.0 10.283797151762883 0.0 32 9.332362767605503E-5 0.0 0.0 10.507353901860872 0.0 33 9.332362767605503E-5 0.0 0.0 10.741316236444742 0.0 34 1.3998544151408253E-4 0.0 0.0 10.970845698714001 0.0 35 1.3998544151408253E-4 0.0 0.0 11.221093006327342 0.0 36 1.3998544151408253E-4 0.0 0.0 11.44824271609086 0.0 37 1.3998544151408253E-4 0.0 0.0 11.690324206282547 0.0 38 1.3998544151408253E-4 0.0 0.0 11.93058588573455 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGC 25 4.4441338E-5 44.0 8 ACGTTAC 20 7.8580074E-4 44.0 27 TACATCG 25 4.4441338E-5 44.0 32 CGCTAAA 20 7.8580074E-4 44.0 10 TCGAATC 30 2.5287463E-6 44.0 12 CGACGGT 225 0.0 43.022224 28 CGTTTTT 8830 0.0 42.804077 1 TACGTAG 110 0.0 42.0 1 GAGCGAT 1365 0.0 39.970695 7 TAATGCG 105 0.0 39.809525 1 CGGTCTA 255 0.0 39.686275 31 CGTTCGA 50 1.3496901E-9 39.6 14 TTCGCGA 50 1.3496901E-9 39.6 2 TCACGAC 260 0.0 38.923077 25 CACGACG 245 0.0 38.612244 26 GCGCGAC 420 0.0 38.238094 9 TCTAGCG 140 0.0 37.714287 1 CGAGGTT 245 0.0 37.714287 6 AGCGATA 280 0.0 37.714287 8 CCCGACG 105 0.0 37.714287 10 >>END_MODULE