##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546759_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3255280 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.45300496424271 31.0 31.0 33.0 30.0 34.0 2 31.8409577670738 31.0 31.0 34.0 30.0 34.0 3 31.982993782408887 31.0 31.0 34.0 30.0 34.0 4 35.669962030915926 37.0 35.0 37.0 33.0 37.0 5 35.54801706765624 37.0 35.0 37.0 33.0 37.0 6 35.60295980683689 37.0 35.0 37.0 33.0 37.0 7 35.99296803961564 37.0 35.0 37.0 35.0 37.0 8 22.183178098350986 35.0 0.0 37.0 0.0 37.0 9 30.003227372146174 37.0 18.0 39.0 17.0 39.0 10 34.29027518370155 35.0 32.0 39.0 27.0 39.0 11 35.907225184930326 37.0 35.0 39.0 32.0 39.0 12 36.26121623946327 37.0 35.0 39.0 32.0 39.0 13 36.319141210587105 38.0 35.0 39.0 32.0 39.0 14 37.423605649898015 39.0 36.0 41.0 33.0 41.0 15 37.714359133469316 39.0 36.0 41.0 33.0 41.0 16 37.80425094001131 40.0 36.0 41.0 33.0 41.0 17 37.76534829569192 40.0 36.0 41.0 33.0 41.0 18 37.737868017497725 39.0 36.0 41.0 33.0 41.0 19 37.746351465926125 39.0 36.0 41.0 33.0 41.0 20 37.6379236194736 39.0 35.0 41.0 33.0 41.0 21 37.52058870511907 39.0 35.0 41.0 33.0 41.0 22 37.476884630507975 39.0 35.0 41.0 33.0 41.0 23 37.34763215453049 39.0 35.0 41.0 32.0 41.0 24 37.275963972377184 39.0 35.0 41.0 32.0 41.0 25 37.146074377626505 39.0 35.0 41.0 32.0 41.0 26 37.07552222850262 39.0 35.0 41.0 32.0 41.0 27 36.9466706396992 39.0 35.0 41.0 32.0 41.0 28 36.98632836499472 39.0 35.0 41.0 32.0 41.0 29 36.93440625691185 39.0 35.0 41.0 32.0 41.0 30 36.85675026418618 39.0 35.0 41.0 31.0 41.0 31 36.787785689710255 39.0 35.0 41.0 31.0 41.0 32 36.546088201322156 39.0 35.0 41.0 31.0 41.0 33 36.4533468703153 39.0 35.0 41.0 30.0 41.0 34 36.354060173011234 39.0 35.0 41.0 30.0 41.0 35 36.206422181809245 39.0 35.0 41.0 30.0 41.0 36 36.07620941977341 38.0 35.0 41.0 30.0 41.0 37 36.04740943943378 38.0 35.0 40.0 30.0 41.0 38 35.98581228035684 38.0 35.0 40.0 30.0 41.0 39 35.92815548892876 38.0 35.0 40.0 29.0 41.0 40 35.88637229362758 38.0 35.0 40.0 29.0 41.0 41 35.926307107222726 38.0 35.0 40.0 29.0 41.0 42 35.702561070015484 38.0 35.0 40.0 28.0 41.0 43 35.725952913420656 38.0 35.0 40.0 29.0 41.0 44 35.53472727384434 38.0 35.0 40.0 28.0 41.0 45 35.334180777076014 38.0 34.0 40.0 27.0 41.0 46 35.406625236538794 38.0 34.0 40.0 27.0 41.0 47 35.26636049740729 38.0 34.0 40.0 27.0 41.0 48 35.300536052198275 38.0 34.0 40.0 27.0 41.0 49 35.243184303654374 38.0 34.0 40.0 27.0 41.0 50 34.74545937676636 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 1.0 13 10.0 14 17.0 15 49.0 16 131.0 17 338.0 18 869.0 19 1938.0 20 3664.0 21 6316.0 22 9815.0 23 14866.0 24 21641.0 25 30273.0 26 39843.0 27 47040.0 28 52372.0 29 60841.0 30 75562.0 31 96266.0 32 125785.0 33 166010.0 34 258164.0 35 409652.0 36 310948.0 37 457469.0 38 542963.0 39 522431.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.32407043326534 24.20406232336389 30.568307488142345 12.903559755228427 2 29.18968567988007 26.710759135926864 30.753176378068858 13.346378806124203 3 27.834379838293483 25.67376692634735 32.56162296330884 13.93023027205033 4 24.843577203804283 27.90349831658106 32.57931729375046 14.673607185864196 5 22.534344203878007 32.77251112039517 30.671462977071094 14.021681698655723 6 20.39839890884962 40.899523236096435 27.516926347349536 11.185151507704406 7 87.24807082647268 4.099524464869382 6.730050871200019 1.9223538374579143 8 54.63302695927846 39.66749404045121 3.667825809146986 2.031653191123344 9 83.0874149074734 4.945166007225185 8.533858838563809 3.4335602467376076 10 45.80748814234106 27.028765574697104 14.413015163058171 12.750731119903664 11 39.067361332972894 22.725295519893834 23.980118453712123 14.227224693421151 12 34.370130987196184 21.80380796736379 26.924012680936816 16.90204836450321 13 21.607757243616525 34.926826570986215 28.79958098842496 14.665835196972305 14 16.57716079722789 38.30134427760438 28.596157626993683 16.52533729817404 15 14.39114300459561 24.429019930697205 45.29238652281831 15.887450541888871 16 16.354414981199774 21.031247696050723 43.135244894448405 19.479092428301097 17 17.135945295028385 21.67555479098572 30.308483448428397 30.880016465557492 18 21.48693814356983 23.413838440932885 34.123946327197665 20.975277088299624 19 26.62136590400826 25.61687473888575 26.988799734585044 20.77295962252095 20 28.106368730186038 24.446990735051976 26.14503207097393 21.30160846378806 21 22.332395369983534 29.409636037453 28.051872649971738 20.20609594259173 22 22.339983042933326 25.16459413629549 26.613256002555847 25.882166818215328 23 18.869621046423042 30.758367943771347 26.27580423189403 24.096206777911576 24 19.556658720601607 25.261298567250744 35.47799267651323 19.704050035634417 25 18.062993045145117 26.450658622299773 33.96832223341771 21.5180260991374 26 17.809589344081 31.713063085203114 28.988535548401366 21.488812022314516 27 19.69852055737141 31.45121157012607 28.676672974367794 20.173594898134724 28 17.403940674842104 28.280885208031258 35.96004030375267 18.355133813373964 29 17.745908186085373 24.894479123147626 34.77123319652994 22.588379494237053 30 20.204928608291763 28.449134943845078 30.224926888009634 21.12100955985353 31 26.858887714728073 25.9817895849205 25.46536703447937 21.69395566587206 32 27.626778648841267 26.09059742940699 26.657430390012532 19.625193531739203 33 27.088975449116514 26.601982010764054 25.598043793467845 20.710998746651594 34 20.93021184045612 27.09041925732963 28.97600206433855 23.003366837875696 35 21.927821877073555 25.848867071342557 30.00983018357868 22.21348086800521 36 28.464955395542013 24.915183947310215 27.369043523137794 19.250817134009978 37 22.771558821360987 30.355852645548154 28.373135337052418 18.499453196038438 38 21.785714285714285 30.823707945245875 26.272087193728343 21.118490575311494 39 21.079968543412548 31.092317711533262 27.317680813939198 20.51003293111499 40 23.224054459217026 26.193967953601533 27.185157651569142 23.3968199356123 41 18.317349045243418 25.692597871765255 27.736876704922466 28.25317637806886 42 22.434014892728122 26.16957681059694 26.45692536433118 24.93948293234376 43 22.687295716497506 26.481500823277877 27.08209432061144 23.749109139613182 44 21.38399768990686 29.201266864908703 28.389232262662507 21.025503182521934 45 19.47218058047234 32.66966282470325 25.625138236956573 22.233018357867834 46 23.68416848934654 29.48965987564818 26.906748421026762 19.919423213978522 47 22.138679314836203 26.43376299427392 27.96631933351355 23.461238357376324 48 22.945553070703596 24.562526111425132 29.50016588434789 22.991754933523385 49 22.344713818780566 23.37067779115775 30.70350323167285 23.581105158388834 50 20.971652208104985 28.6387960482662 28.024286697304074 22.36526504632474 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1551.0 1 2193.5 2 2836.0 3 11971.5 4 21107.0 5 15752.0 6 10397.0 7 11293.5 8 12190.0 9 13201.5 10 14213.0 11 14536.5 12 14860.0 13 14653.5 14 14447.0 15 13845.0 16 13243.0 17 12952.5 18 12662.0 19 12826.0 20 12990.0 21 14052.5 22 15115.0 23 17403.5 24 19692.0 25 22182.5 26 24673.0 27 29653.0 28 34633.0 29 40891.5 30 47150.0 31 53657.0 32 60164.0 33 68863.0 34 77562.0 35 86863.5 36 96165.0 37 110768.5 38 125372.0 39 156526.5 40 187681.0 41 227243.5 42 266806.0 43 291717.0 44 316628.0 45 331778.5 46 346929.0 47 338064.0 48 329199.0 49 310395.5 50 291592.0 51 257909.5 52 224227.0 53 198378.0 54 172529.0 55 152009.0 56 131489.0 57 118807.5 58 106126.0 59 95627.5 60 85129.0 61 73824.0 62 62519.0 63 51328.5 64 40138.0 65 32014.0 66 23890.0 67 19489.0 68 15088.0 69 12802.0 70 10516.0 71 8560.5 72 6605.0 73 5129.5 74 3654.0 75 2671.5 76 1689.0 77 1394.0 78 1099.0 79 755.0 80 411.0 81 304.5 82 198.0 83 133.5 84 69.0 85 45.0 86 21.0 87 16.5 88 12.0 89 11.0 90 10.0 91 6.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3255280.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.41886382646028 #Duplication Level Percentage of deduplicated Percentage of total 1 78.6061120394449 19.19471945818685 2 7.53871092020585 3.681735107751115 3 2.597193007401541 1.9026150713631922 4 1.361070130127943 1.3294314466342727 5 0.8673334185683266 1.0589648320079124 6 0.6848371217176898 1.0033766651117564 7 0.5305628875822501 0.9069020032271163 8 0.4381980441970112 0.8560238696214433 9 0.3592895818199826 0.7896099035455214 >10 5.166550923629815 30.86941792929464 >50 1.489377298032118 25.18855276067078 >100 0.35656187503350656 11.756257364498591 >500 0.002847025710380672 0.47698118388999156 >1k 0.0010845812230021604 0.48767419627175623 >5k 2.711453057505401E-4 0.4977382079251819 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 7595 0.23331326337519354 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7440 0.22855176820427123 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4579 0.14066378314615025 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06776682804551375 0.0 2 0.0 0.0 0.0 0.22526480057015064 0.0 3 0.0 0.0 0.0 0.337943279840751 0.0 4 0.0 0.0 0.0 0.5001413088889435 0.0 5 0.0 0.0 0.0 0.8116659703619965 0.0 6 0.0 0.0 0.0 1.2713192106362585 0.0 7 0.0 0.0 0.0 1.580048413654125 0.0 8 0.0 0.0 0.0 2.493917573910693 0.0 9 0.0 0.0 0.0 3.2843564916074808 0.0 10 0.0 0.0 0.0 4.419957730210612 0.0 11 0.0 0.0 0.0 5.03336118552014 0.0 12 0.0 0.0 0.0 5.635613526332604 0.0 13 0.0 0.0 0.0 5.906834435133076 0.0 14 0.0 0.0 0.0 6.0098977660907815 0.0 15 0.0 0.0 0.0 6.138980364208302 0.0 16 3.071932368336979E-5 0.0 0.0 6.389895800054066 0.0 17 3.071932368336979E-5 0.0 0.0 6.686920940748569 0.0 18 3.071932368336979E-5 0.0 0.0 7.159844928854047 0.0 19 3.071932368336979E-5 0.0 0.0 7.359919884003833 0.0 20 3.071932368336979E-5 0.0 0.0 7.5953835000368635 0.0 21 3.071932368336979E-5 0.0 0.0 7.8457152687326435 3.071932368336979E-5 22 3.071932368336979E-5 0.0 0.0 8.105170676562384 3.071932368336979E-5 23 3.071932368336979E-5 0.0 0.0 8.402533729817405 3.071932368336979E-5 24 3.071932368336979E-5 0.0 0.0 8.607769531345998 3.071932368336979E-5 25 3.071932368336979E-5 0.0 0.0 8.784159887935907 3.071932368336979E-5 26 3.071932368336979E-5 0.0 0.0 8.954191344523359 3.071932368336979E-5 27 3.071932368336979E-5 0.0 0.0 9.152238824310045 3.071932368336979E-5 28 3.071932368336979E-5 0.0 0.0 9.333820746602443 3.071932368336979E-5 29 6.143864736673958E-5 0.0 0.0 9.522529551989383 3.071932368336979E-5 30 6.143864736673958E-5 0.0 0.0 9.7890504042663 3.071932368336979E-5 31 6.143864736673958E-5 0.0 0.0 10.003532722223587 3.071932368336979E-5 32 6.143864736673958E-5 0.0 0.0 10.197156619399868 3.071932368336979E-5 33 9.215797105010936E-5 0.0 0.0 10.396309994839154 3.071932368336979E-5 34 9.215797105010936E-5 0.0 0.0 10.597152933081025 3.071932368336979E-5 35 9.215797105010936E-5 0.0 0.0 10.832401513848271 3.071932368336979E-5 36 9.215797105010936E-5 0.0 0.0 11.037207244845298 3.071932368336979E-5 37 9.215797105010936E-5 0.0 0.0 11.2505529478263 3.071932368336979E-5 38 9.215797105010936E-5 0.0 0.0 11.463530018923104 3.071932368336979E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCGAA 30 2.529152E-6 44.000004 16 TACGACG 55 1.8189894E-12 44.0 1 CGTTTTT 10605 0.0 42.796795 1 GAGCGAT 2120 0.0 40.57547 7 AGCGATA 485 0.0 40.37113 8 CGACGGT 340 0.0 40.11765 28 GTAAGCG 100 0.0 39.6 1 TGTACGA 120 0.0 38.500004 2 TTCGCGA 75 0.0 38.13333 2 CGGTCTA 370 0.0 38.054054 31 ACTCGCG 35 7.294322E-6 37.714287 10 TAATGCG 235 0.0 37.44681 1 CGAAGAG 655 0.0 37.282444 3 GCGCGAC 840 0.0 36.928574 9 CCGAACG 30 1.301619E-4 36.666668 1 AAGTACG 235 0.0 36.51064 1 AGACCGA 635 0.0 36.377953 8 GAGGGGA 20635 0.0 36.323723 7 CGTTGAG 285 0.0 36.280704 3 GCGATAC 170 0.0 36.235294 9 >>END_MODULE