##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546758_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2100325 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.41063025960268 31.0 31.0 33.0 30.0 34.0 2 31.809163343768226 31.0 31.0 34.0 30.0 34.0 3 31.94333686453287 31.0 31.0 34.0 30.0 34.0 4 35.64018901836621 37.0 35.0 37.0 33.0 37.0 5 35.52141501910419 37.0 35.0 37.0 33.0 37.0 6 35.56563341387643 37.0 35.0 37.0 33.0 37.0 7 35.97106066918215 37.0 35.0 37.0 35.0 37.0 8 22.146651113518146 35.0 0.0 37.0 0.0 37.0 9 29.968814826276887 37.0 18.0 39.0 17.0 39.0 10 34.214002594836515 35.0 32.0 39.0 27.0 39.0 11 35.86567412186209 37.0 35.0 39.0 32.0 39.0 12 36.15553069167867 37.0 35.0 39.0 32.0 39.0 13 36.18294978158142 38.0 35.0 39.0 32.0 39.0 14 37.26848606763239 39.0 35.0 41.0 32.0 41.0 15 37.587183888207775 39.0 35.0 41.0 33.0 41.0 16 37.68145834573221 39.0 35.0 41.0 33.0 41.0 17 37.64659421756157 39.0 35.0 41.0 33.0 41.0 18 37.61932796114887 39.0 36.0 41.0 33.0 41.0 19 37.62205182531275 39.0 36.0 41.0 33.0 41.0 20 37.49917798435956 39.0 35.0 41.0 33.0 41.0 21 37.407455036720506 39.0 35.0 41.0 32.0 41.0 22 37.35376477449918 39.0 35.0 41.0 32.0 41.0 23 37.22306881077928 39.0 35.0 41.0 32.0 41.0 24 37.15427374334924 39.0 35.0 41.0 32.0 41.0 25 37.02777903419709 39.0 35.0 41.0 32.0 41.0 26 36.94895170985443 39.0 35.0 41.0 32.0 41.0 27 36.812898479997145 38.0 35.0 41.0 31.0 41.0 28 36.86703057860093 39.0 35.0 41.0 32.0 41.0 29 36.80609524716413 38.0 35.0 40.0 31.0 41.0 30 36.72375180031662 38.0 35.0 40.0 31.0 41.0 31 36.648015902300834 38.0 35.0 40.0 31.0 41.0 32 36.396961898753766 38.0 35.0 40.0 30.0 41.0 33 36.26698439527216 38.0 35.0 41.0 30.0 41.0 34 36.204395034101864 38.0 35.0 41.0 30.0 41.0 35 36.06084296477926 38.0 35.0 41.0 30.0 41.0 36 35.92080082844322 38.0 35.0 40.0 30.0 41.0 37 35.85832716365324 38.0 35.0 40.0 29.0 41.0 38 35.80765357742254 38.0 35.0 40.0 29.0 41.0 39 35.75319152988228 38.0 35.0 40.0 29.0 41.0 40 35.67858355254544 38.0 35.0 40.0 29.0 41.0 41 35.71506409722305 38.0 35.0 40.0 29.0 41.0 42 35.48266863461607 38.0 35.0 40.0 27.0 41.0 43 35.50124956851916 38.0 35.0 40.0 28.0 41.0 44 35.30325116351041 38.0 34.0 40.0 27.0 41.0 45 35.093641698308595 38.0 34.0 40.0 26.0 41.0 46 35.17465582707438 38.0 34.0 40.0 27.0 41.0 47 35.04777165438682 38.0 34.0 40.0 26.0 41.0 48 35.08307571447276 38.0 34.0 40.0 26.0 41.0 49 35.0323773701689 37.0 34.0 40.0 26.0 41.0 50 34.505396545772676 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 7.0 14 9.0 15 28.0 16 77.0 17 235.0 18 636.0 19 1454.0 20 2891.0 21 4764.0 22 7554.0 23 11079.0 24 15422.0 25 21240.0 26 27340.0 27 31845.0 28 34939.0 29 40530.0 30 50117.0 31 63483.0 32 82339.0 33 109112.0 34 172692.0 35 278587.0 36 197918.0 37 287316.0 38 341199.0 39 317508.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.68414412055277 25.45582231321343 30.468808398700205 12.391225167533596 2 29.741063882970494 26.565936224155784 30.62940259245593 13.063597300417792 3 28.067560972706605 25.82471760322807 32.454643924154595 13.65307749991073 4 24.410793567662147 28.85753395307869 32.20949138823753 14.522181091021627 5 23.210598359777652 32.03366145715544 31.26911311344673 13.486627069620177 6 19.801411686286645 41.56680513730018 27.962672443550403 10.669110732862771 7 86.53575041957792 4.643186173568377 7.005963362812897 1.8151000440408034 8 54.16028471784129 40.152595431659385 3.6786687774511084 2.008451073048219 9 82.33482913358647 5.340411602966207 8.73126777998643 3.593491483460893 10 48.03451846738005 24.052134788663658 15.426422101341458 12.486924642614833 11 42.0071655577113 23.306250223179745 20.727077952221677 13.959506266887267 12 36.1930177472534 22.392582100389223 25.526811326818468 15.887588825538904 13 21.779915013152724 38.43238546415436 26.409150964731648 13.378548557961267 14 15.8988251818171 41.66021925178246 27.38818992298811 15.05276564341233 15 14.119433897134966 24.440455643769415 46.60745360837013 14.832656850725485 16 15.03262590313404 20.43678954447526 44.51358718293598 20.016997369454728 17 16.402890028924094 21.324128408698652 29.269089307607153 33.00389225477009 18 20.979848356801924 23.63734183995334 34.65806482330115 20.72474497994358 19 27.21007463130706 26.858033875709715 26.172520919381526 19.759370573601704 20 28.64885196338662 25.008986704438595 25.52371656767405 20.818444764500732 21 21.38345256091319 30.315832073607655 27.4670824753312 20.833632890147953 22 21.277230904740932 26.489281420732507 25.93317700832014 26.30031066620642 23 18.594265173247 31.811552973944508 24.96737409686596 24.626807755942533 24 19.631199933343648 25.94817468725078 35.568304905193244 18.852320474212327 25 16.794924595003156 27.229643031435614 34.62235606394248 21.35307630961875 26 16.744837108542725 33.36688369657077 29.3111304202921 20.57714877459441 27 19.187935200504683 33.039077285658166 28.630997583707284 19.14198993012986 28 16.650089867044386 28.794972206682303 37.085593896182736 17.469344030090582 29 17.18595931582017 25.790913311035197 35.29820384940426 21.724923523740376 30 19.45346553509576 30.644543106424006 30.426814897694403 19.475176460785832 31 27.48346089295704 27.454227321962076 24.382702676966662 20.67960910811422 32 29.33826907740469 27.34114958399295 25.575422851225404 17.74515848737695 33 26.5863140228298 29.02241319795746 24.740980562531988 19.65029221668075 34 21.08797448013998 28.344708557009035 27.61820194493709 22.949115017913893 35 21.1362527227929 27.31696285098735 29.360218061490485 22.18656636472927 36 29.300703462559362 26.222894075916827 25.61346458286218 18.862937878661636 37 21.2136693130825 31.975146703486367 28.68632235487365 18.124861628557483 38 20.418363824646185 32.41198385964077 24.668848868627475 22.50080344708557 39 20.322616737885806 31.476938092914192 27.11870781902801 21.081737350172 40 22.951638436908574 26.872698272886343 25.722971444895432 24.452691845309655 41 17.269660647756897 25.48000904621904 27.31124944948996 29.939080856534105 42 22.34692250008927 26.423291633437685 25.354218989918227 25.875566876554817 43 22.008641519764797 27.523597538476185 26.35235023151179 24.11541071024722 44 21.16620046897504 30.527608822444147 27.98962065394641 20.316570054634404 45 18.59478890171759 34.302976920238535 24.4951614631069 22.607072714936972 46 22.664397176627425 31.858926594693678 25.93246283313297 19.544213395545928 47 21.77039267732375 26.87931629628748 27.727851642007785 23.62243938438099 48 22.44766881315987 24.6597550379108 29.44734743432564 23.44522871460369 49 21.356218680442314 23.806934641067453 30.940306857272088 23.896539821218145 50 19.9011581540952 30.298834704152927 27.548355611631532 22.251651530120338 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1272.0 1 1637.5 2 2003.0 3 7068.0 4 12133.0 5 9478.5 6 6824.0 7 7489.0 8 8154.0 9 8980.5 10 9807.0 11 10393.5 12 10980.0 13 10843.5 14 10707.0 15 10401.0 16 10095.0 17 9744.0 18 9393.0 19 9317.5 20 9242.0 21 9551.0 22 9860.0 23 10543.0 24 11226.0 25 13387.5 26 15549.0 27 18258.5 28 20968.0 29 25301.0 30 29634.0 31 34255.0 32 38876.0 33 43467.0 34 48058.0 35 55003.5 36 61949.0 37 72245.0 38 82541.0 39 105803.0 40 129065.0 41 157776.5 42 186488.0 43 202529.0 44 218570.0 45 223584.0 46 228598.0 47 223287.5 48 217977.0 49 205801.5 50 193626.0 51 169453.5 52 145281.0 53 125764.5 54 106248.0 55 90691.5 56 75135.0 57 66770.5 58 58406.0 59 51555.0 60 44704.0 61 38259.5 62 31815.0 63 26410.5 64 21006.0 65 17087.5 66 13169.0 67 10886.0 68 8603.0 69 7145.5 70 5688.0 71 4249.0 72 2810.0 73 2267.0 74 1724.0 75 1390.0 76 1056.0 77 826.5 78 597.0 79 438.0 80 279.0 81 208.0 82 137.0 83 91.5 84 46.0 85 29.0 86 12.0 87 11.0 88 10.0 89 6.0 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2100325.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.664419180693315 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64123746406698 20.702585014496318 2 7.334037404198443 3.9111569526486236 3 2.5485880806341057 2.0386986270283924 4 1.5153855207221805 1.6162749897955777 5 1.0537426177711455 1.404871743440546 6 0.7813715385055191 1.2500890943144647 7 0.6545015647317254 1.2216332853498486 8 0.5327999666454838 1.1365441320075678 9 0.45885711257455525 1.1011642554357473 >10 6.228889398979704 39.05142581095571 >50 1.0934880971780871 19.547294010887942 >100 0.15401729469219613 5.757847437506524 >500 0.0019954901352609604 0.3920021603507246 >1k 9.07040970573164E-4 0.5153009642418891 >5k 1.814081941146328E-4 0.353111521540016 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 7300 0.347565257757728 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4257 0.20268291811981481 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2660 0.12664706652541868 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07108423696332711 0.0 2 0.0 0.0 0.0 0.24591432278337877 0.0 3 0.0 0.0 0.0 0.3697523002392487 0.0 4 0.0 0.0 0.0 0.5446299977384452 0.0 5 0.0 0.0 0.0 0.8888624379560306 0.0 6 0.0 0.0 0.0 1.3468391796507684 0.0 7 0.0 0.0 0.0 1.65679121088403 0.0 8 0.0 0.0 0.0 2.5415590444335994 0.0 9 0.0 0.0 0.0 3.2865865996929045 0.0 10 0.0 0.0 0.0 4.468546534464904 0.0 11 0.0 0.0 0.0 5.194100912953948 0.0 12 0.0 0.0 0.0 5.941175770416483 0.0 13 4.761167914489424E-5 0.0 0.0 6.251651530120339 0.0 14 4.761167914489424E-5 0.0 0.0 6.38377393974742 0.0 15 4.761167914489424E-5 0.0 0.0 6.544796638615453 0.0 16 4.761167914489424E-5 0.0 0.0 6.869793960458501 0.0 17 4.761167914489424E-5 0.0 0.0 7.2409269993929515 0.0 18 4.761167914489424E-5 0.0 0.0 7.842357730351255 0.0 19 4.761167914489424E-5 0.0 0.0 8.094318736386036 0.0 20 4.761167914489424E-5 0.0 0.0 8.367276492923715 0.0 21 4.761167914489424E-5 0.0 0.0 8.655517598466904 0.0 22 4.761167914489424E-5 0.0 0.0 8.94342542225608 0.0 23 4.761167914489424E-5 0.0 0.0 9.2878006975111 0.0 24 4.761167914489424E-5 0.0 0.0 9.52157404211253 0.0 25 4.761167914489424E-5 0.0 0.0 9.715401187911395 0.0 26 4.761167914489424E-5 0.0 0.0 9.90613357456584 0.0 27 4.761167914489424E-5 0.0 0.0 10.117196148215157 0.0 28 9.522335828978848E-5 0.0 0.0 10.321497863425899 0.0 29 9.522335828978848E-5 0.0 0.0 10.526847035577827 0.0 30 9.522335828978848E-5 0.0 0.0 10.810803089997977 0.0 31 9.522335828978848E-5 0.0 0.0 11.05052789449252 0.0 32 9.522335828978848E-5 0.0 0.0 11.260876292954661 0.0 33 9.522335828978848E-5 0.0 0.0 11.47712853963077 0.0 34 9.522335828978848E-5 0.0 0.0 11.69638032209301 0.0 35 9.522335828978848E-5 0.0 0.0 11.946436860961994 0.0 36 9.522335828978848E-5 0.0 0.0 12.173068453691691 0.0 37 9.522335828978848E-5 0.0 0.0 12.40079511504172 0.0 38 9.522335828978848E-5 0.0 0.0 12.631664147215313 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGCGTA 20 7.8579696E-4 44.000004 15 CCACGTA 20 7.8579696E-4 44.000004 29 CCTTACG 25 4.444103E-5 44.0 30 CCGTCGA 25 4.444103E-5 44.0 2 TATCTCG 30 2.5287209E-6 44.0 1 CATACCG 25 4.444103E-5 44.0 1 TATAGCG 135 0.0 44.0 1 ACGAGTT 25 4.444103E-5 44.0 5 TAGTCGA 30 2.5287209E-6 44.0 2 TCGCGAA 25 4.444103E-5 44.0 21 TAATGCG 105 0.0 43.999996 1 TTGTGCG 110 0.0 42.000004 1 CGTTTTT 6780 0.0 41.890854 1 GAGCGAT 1340 0.0 41.865673 7 TAAGCGA 75 0.0 41.066666 2 CGACGGT 295 0.0 40.27119 28 TCGTAGA 95 0.0 39.36842 2 ATGTACG 45 2.352499E-8 39.11111 1 TATACGA 45 2.352499E-8 39.11111 2 CACGACG 305 0.0 38.95082 26 >>END_MODULE