##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546757_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2187457 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.494536349743104 31.0 31.0 33.0 30.0 34.0 2 31.886407824245232 31.0 31.0 34.0 30.0 34.0 3 32.02614954259672 33.0 31.0 34.0 30.0 34.0 4 35.70621091066019 37.0 35.0 37.0 33.0 37.0 5 35.59345669423445 37.0 35.0 37.0 33.0 37.0 6 35.6434723059699 37.0 35.0 37.0 33.0 37.0 7 36.03600482203765 37.0 35.0 37.0 35.0 37.0 8 21.893411847638603 35.0 0.0 37.0 0.0 37.0 9 29.862624956742007 37.0 18.0 39.0 17.0 39.0 10 34.33272745475683 35.0 32.0 39.0 27.0 39.0 11 35.941411876896325 37.0 35.0 39.0 32.0 39.0 12 36.376435285356465 37.0 35.0 39.0 32.0 39.0 13 36.472505288103946 39.0 35.0 39.0 32.0 39.0 14 37.60382215513265 39.0 36.0 41.0 33.0 41.0 15 37.869794011950866 40.0 36.0 41.0 33.0 41.0 16 37.93591599743446 40.0 36.0 41.0 33.0 41.0 17 37.901908014648974 40.0 36.0 41.0 33.0 41.0 18 37.86621999883884 40.0 36.0 41.0 33.0 41.0 19 37.88507339801422 40.0 36.0 41.0 33.0 41.0 20 37.790122045827644 40.0 36.0 41.0 33.0 41.0 21 37.69770651491664 40.0 35.0 41.0 33.0 41.0 22 37.66662658968839 39.0 35.0 41.0 33.0 41.0 23 37.53315333741418 39.0 35.0 41.0 33.0 41.0 24 37.44942963450253 39.0 35.0 41.0 33.0 41.0 25 37.323535045488896 39.0 35.0 41.0 32.0 41.0 26 37.263660497097774 39.0 35.0 41.0 32.0 41.0 27 37.143017211309754 39.0 35.0 41.0 32.0 41.0 28 37.19071643465449 39.0 35.0 41.0 32.0 41.0 29 37.12452359063515 39.0 35.0 41.0 32.0 41.0 30 37.048673413923105 39.0 35.0 41.0 32.0 41.0 31 36.98285909163015 39.0 35.0 41.0 32.0 41.0 32 36.76214069579425 39.0 35.0 41.0 31.0 41.0 33 36.64742255504908 39.0 35.0 41.0 31.0 41.0 34 36.55833828962123 39.0 35.0 41.0 30.0 41.0 35 36.40917558608009 39.0 35.0 41.0 30.0 41.0 36 36.268166185666736 39.0 35.0 41.0 30.0 41.0 37 36.21191685139411 39.0 35.0 41.0 30.0 41.0 38 36.12399603740782 39.0 35.0 41.0 30.0 41.0 39 36.03942523213028 39.0 35.0 41.0 30.0 41.0 40 35.95199814213491 39.0 35.0 40.0 29.0 41.0 41 35.97338964834509 39.0 35.0 40.0 29.0 41.0 42 35.74628026973787 38.0 35.0 40.0 28.0 41.0 43 35.80631619272973 38.0 35.0 40.0 29.0 41.0 44 35.61656709137597 38.0 35.0 40.0 28.0 41.0 45 35.45942937392598 38.0 35.0 40.0 27.0 41.0 46 35.563442389953266 38.0 35.0 40.0 28.0 41.0 47 35.45232569143074 38.0 35.0 40.0 27.0 41.0 48 35.47364679625702 38.0 35.0 40.0 28.0 41.0 49 35.409888285804016 38.0 35.0 40.0 27.0 41.0 50 34.905830377465705 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 1.0 13 1.0 14 8.0 15 22.0 16 85.0 17 212.0 18 536.0 19 1166.0 20 2409.0 21 4034.0 22 6480.0 23 9509.0 24 13983.0 25 20139.0 26 26411.0 27 30908.0 28 33816.0 29 39068.0 30 48116.0 31 61299.0 32 80633.0 33 107729.0 34 166752.0 35 258754.0 36 208331.0 37 310850.0 38 377739.0 39 378462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.552848810285184 24.578265995628716 31.081799550802597 12.787085643283502 2 29.34489683682925 26.70329062468428 31.13912639197022 12.812686146516253 3 27.457088299335712 25.785055431946773 33.26620820432127 13.491648064396236 4 24.471155318710263 27.99922467047352 32.85916020292056 14.670459807895654 5 23.18107281651708 32.587657723100385 30.453032905332538 13.778236555049997 6 20.110383884117493 41.26284539536091 27.436287890459106 11.19048283006249 7 87.85374981085342 3.8046462170456383 6.661570947451767 1.6800330246491701 8 54.21532857560172 40.58237487639757 3.5510183743040438 1.6512781736966713 9 83.25850519575928 5.702649240647931 8.10777080418038 2.9310747594124136 10 42.88747161658492 34.818467288728414 12.237634842650621 10.05642625203604 11 34.8312675403448 24.069455993877824 27.586599416582818 13.512677049194565 12 32.708711531243814 23.907441380561995 27.901805612636043 15.482041475558148 13 21.748221793616974 35.135547807339755 28.533132308429376 14.583098090613897 14 16.65088730887053 38.32966773746867 28.941003183148283 16.078441770512516 15 14.700631829562822 25.614446363974242 44.496920396606654 15.188001409856286 16 17.04417503978364 23.2624001294654 41.42746577418436 18.265959056566597 17 17.76222344027791 22.94125095944743 30.15698137151953 29.139544228755128 18 20.79122012455559 24.93205580726844 34.50815261740002 19.768571450775944 19 25.54715361261958 26.335694827372606 28.422638707869456 19.694512852138352 20 27.31834271485108 25.916029435092895 26.80290401137028 19.962723838685744 21 22.192527670258205 29.010078826692364 29.2436834186912 19.55371008435823 22 22.075313937599688 25.74382033566831 27.893348303532367 24.287517423199635 23 18.219558144457242 31.057296211994114 27.970378389152334 22.752767254396314 24 18.943549518916257 26.113061879616378 36.021462364745915 18.921926236721454 25 17.15238288112635 27.971795559867008 34.44200274565397 20.433818813352676 26 17.628963677914584 32.95996218439951 29.49278545818272 19.918288679503185 27 18.532295720555876 31.74745835003842 30.296275538216292 19.423970391189403 28 16.312914951013894 28.91238547774882 36.60922248985923 18.165477081378057 29 17.04079211614217 25.93660126804778 35.762120123961296 21.260486491848756 30 19.199188829768996 29.503574241687954 31.63961623017047 19.657620698372586 31 24.742520652977408 27.65494361717739 26.80505262503446 20.797483104810745 32 25.268108127382614 28.23488644576785 28.230726363992524 18.26627906285701 33 24.618495357851604 28.848795656326043 26.953032676756617 19.579676309065732 34 19.31868832164472 28.793891719928666 29.316141985876754 22.57127797254986 35 20.408949753069432 27.680818411516206 30.13133515310244 21.778896682311927 36 26.181268934657915 26.807612675357735 27.559536027451053 19.451582362533298 37 21.569246846909447 31.38617124816625 28.526915043358564 18.517666861565736 38 21.569566853199856 31.96647979823146 25.39423632098825 21.069717027580428 39 21.656654279375548 30.951511275421645 27.529912587996012 19.861921857206795 40 23.547160012745394 27.149379393514934 27.41480175381733 21.88865883992234 41 19.54214414271915 26.310277184877233 27.686807100665295 26.460771571738324 42 22.51710547910199 27.22791808021826 26.45254283855637 23.80243360212338 43 22.25666607389311 27.294250812701687 27.83474143720311 22.614341676202095 44 20.44337328688061 29.980840766241347 28.628357037418333 20.947428909459706 45 18.746197068102365 32.98944847830151 26.398004623633746 21.866349829962374 46 22.139498056418937 30.781222213739518 27.519855247440294 19.559424482401255 47 21.610481943187914 27.356240602672415 28.488285712587725 22.544991741551947 48 22.18247032970248 25.758769200948866 29.833683587837385 22.22507688151127 49 22.069325248450596 24.116405488199312 30.982323309669628 22.83194595368046 50 19.99138725926955 30.08310563361931 28.238543660515386 21.68696344659575 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1321.0 1 1729.0 2 2137.0 3 8812.0 4 15487.0 5 11748.5 6 8010.0 7 8583.5 8 9157.0 9 9968.0 10 10779.0 11 11034.0 12 11289.0 13 11215.5 14 11142.0 15 10993.5 16 10845.0 17 10444.0 18 10043.0 19 9977.0 20 9911.0 21 11081.0 22 12251.0 23 13813.0 24 15375.0 25 17495.5 26 19616.0 27 23828.5 28 28041.0 29 33712.5 30 39384.0 31 46204.5 32 53025.0 33 59350.0 34 65675.0 35 73945.0 36 82215.0 37 92576.5 38 102938.0 39 124140.5 40 145343.0 41 169662.0 42 193981.0 43 207399.0 44 220817.0 45 223190.5 46 225564.0 47 219240.5 48 212917.0 49 201125.5 50 189334.0 51 164924.5 52 140515.0 53 120554.0 54 100593.0 55 87243.5 56 73894.0 57 65028.0 58 56162.0 59 48773.0 60 41384.0 61 34996.5 62 28609.0 63 23036.0 64 17463.0 65 13275.0 66 9087.0 67 7073.0 68 5059.0 69 4125.5 70 3192.0 71 2628.0 72 2064.0 73 1816.0 74 1568.0 75 1172.0 76 776.0 77 516.0 78 256.0 79 189.5 80 123.0 81 98.0 82 73.0 83 47.5 84 22.0 85 18.5 86 15.0 87 9.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2187457.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.60728480089274 #Duplication Level Percentage of deduplicated Percentage of total 1 76.59338429091245 20.379419896925317 2 6.872742976804723 3.6573005949435724 3 2.664873848414227 2.1271517232962522 4 1.5475011155390679 1.6469921164338879 5 1.0950728861846493 1.4568458080225282 6 0.8489975444344479 1.3553711676015565 7 0.7155614299761607 1.3327402731936844 8 0.6482137496742766 1.3797766279550454 9 0.5502856387706403 1.317744604135045 >10 7.499880197341498 46.08302321201918 >50 0.889975854731084 15.447447172094957 >100 0.07103663681589234 2.7350619311945614 >500 0.0014136173719556605 0.22943637209219409 >1k 7.068086859778303E-4 0.30983313362449977 >5k 3.5340434298891514E-4 0.5418553664677329 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6192 0.2830684214592561 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5333 0.2437990781075925 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3230 0.1476600454317502 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06107548628384467 0.0 2 0.0 0.0 0.0 0.19191234387693107 0.0 3 0.0 0.0 0.0 0.29010855984826217 0.0 4 0.0 0.0 0.0 0.42281973999946054 0.0 5 0.0 0.0 0.0 0.6891564039887412 0.0 6 0.0 0.0 0.0 1.0619637323156523 0.0 7 0.0 0.0 0.0 1.3089171581429944 0.0 8 0.0 0.0 0.0 2.009365212664752 0.0 9 0.0 0.0 0.0 2.666200981322147 0.0 10 0.0 0.0 0.0 3.6328485542801525 0.0 11 0.0 0.0 0.0 4.238940468315492 0.0 12 0.0 0.0 0.0 4.829489219673804 0.0 13 0.0 0.0 0.0 5.095185871082266 0.0 14 0.0 0.0 0.0 5.2063194842230045 0.0 15 0.0 0.0 0.0 5.344196480205096 0.0 16 0.0 0.0 0.0 5.616247542237402 0.0 17 0.0 0.0 0.0 5.947591198364128 0.0 18 0.0 0.0 0.0 6.4780701974941675 0.0 19 0.0 0.0 0.0 6.6884057606618095 0.0 20 0.0 0.0 0.0 6.940753578241766 0.0 21 0.0 0.0 0.0 7.194792857642459 0.0 22 0.0 0.0 0.0 7.465198173038373 0.0 23 0.0 0.0 0.0 7.773135654780871 0.0 24 0.0 0.0 0.0 7.989368476728914 0.0 25 0.0 0.0 0.0 8.170034885257174 0.0 26 0.0 0.0 0.0 8.346495496825765 0.0 27 0.0 0.0 0.0 8.532464866737952 0.0 28 0.0 0.0 0.0 8.726800115385124 0.0 29 0.0 0.0 0.0 8.927626920209175 0.0 30 0.0 0.0 0.0 9.209689607612859 0.0 31 0.0 0.0 0.0 9.447865718046115 0.0 32 0.0 0.0 0.0 9.664738552574976 0.0 33 0.0 0.0 0.0 9.875988419429502 0.0 34 0.0 0.0 0.0 10.084038223379935 0.0 35 0.0 0.0 0.0 10.329574478492606 0.0 36 0.0 0.0 0.0 10.560664735352512 0.0 37 0.0 0.0 0.0 10.795640782881675 0.0 38 0.0 0.0 0.0 11.026319603082483 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCCG 35 1.4468787E-7 44.0 26 CGACCGA 30 2.52877E-6 44.0 32 TCGATCT 20 7.8580435E-4 44.0 12 TATAGCG 125 0.0 44.0 1 CGTCCGT 20 7.8580435E-4 44.0 28 TTCGATC 30 2.52877E-6 44.0 31 ATTAGCG 170 0.0 42.70588 1 CGTTTTT 7685 0.0 42.568638 1 AGCGATA 270 0.0 42.37037 8 GAGCGAT 1460 0.0 42.041092 7 TTAGCGA 195 0.0 41.743587 2 TTCGAAG 145 0.0 40.965515 1 CGGTCTA 425 0.0 40.89412 31 CCGAGAC 55 7.8216544E-11 40.000004 5 GCGTAAG 245 0.0 39.510204 1 TCACGAC 435 0.0 39.448277 25 CGAACGG 95 0.0 39.36842 2 CGAGACC 225 0.0 39.11111 6 TGTTACG 85 0.0 38.82353 1 TGTAGCG 165 0.0 38.666668 1 >>END_MODULE