##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546751_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3199513 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.522125398459078 31.0 31.0 33.0 30.0 34.0 2 31.91901173709874 31.0 31.0 34.0 30.0 34.0 3 31.97321623634597 31.0 31.0 34.0 30.0 34.0 4 35.71498006102804 37.0 35.0 37.0 33.0 37.0 5 35.625142638895355 37.0 35.0 37.0 33.0 37.0 6 35.67534934222802 37.0 35.0 37.0 33.0 37.0 7 36.06088957913283 37.0 35.0 37.0 35.0 37.0 8 21.952547465817453 35.0 0.0 37.0 0.0 37.0 9 29.891223133020556 37.0 18.0 39.0 17.0 39.0 10 34.358707403282935 35.0 32.0 39.0 27.0 39.0 11 36.01423747926638 37.0 35.0 39.0 32.0 39.0 12 36.71217244624416 39.0 35.0 39.0 33.0 39.0 13 36.949888623674916 39.0 37.0 39.0 33.0 39.0 14 38.177068510113884 40.0 37.0 41.0 33.0 41.0 15 38.362616123141244 40.0 38.0 41.0 33.0 41.0 16 38.35622014975404 40.0 37.0 41.0 33.0 41.0 17 38.29534651054708 40.0 37.0 41.0 33.0 41.0 18 38.160365968195784 40.0 37.0 41.0 33.0 41.0 19 38.087681469023565 40.0 37.0 41.0 34.0 41.0 20 37.90686551359535 40.0 36.0 41.0 33.0 41.0 21 37.84588873369166 40.0 36.0 41.0 33.0 41.0 22 37.81760067860328 40.0 36.0 41.0 33.0 41.0 23 37.61854757270872 39.0 35.0 41.0 33.0 41.0 24 37.37595502815585 39.0 35.0 41.0 33.0 41.0 25 37.24713854889791 39.0 35.0 41.0 33.0 41.0 26 37.18423960146435 39.0 35.0 41.0 33.0 41.0 27 37.07722237728054 39.0 35.0 41.0 32.0 41.0 28 37.03959040016402 39.0 35.0 41.0 32.0 41.0 29 36.92180903781294 39.0 35.0 41.0 32.0 41.0 30 36.74569067229919 39.0 35.0 41.0 31.0 41.0 31 36.513275926680095 39.0 35.0 41.0 31.0 41.0 32 35.98358312655707 39.0 35.0 41.0 28.0 41.0 33 35.50499591656605 39.0 35.0 41.0 24.0 41.0 34 35.08476915080514 39.0 35.0 41.0 21.0 41.0 35 34.724772488813144 39.0 35.0 41.0 18.0 41.0 36 34.556488753132115 39.0 34.0 41.0 18.0 41.0 37 34.515715360431415 39.0 34.0 41.0 17.0 41.0 38 34.42406016165585 39.0 34.0 41.0 16.0 41.0 39 34.30850695090159 39.0 34.0 41.0 15.0 41.0 40 34.26819956662155 39.0 34.0 40.0 15.0 41.0 41 34.23682729215353 39.0 34.0 40.0 15.0 41.0 42 33.99784967274707 38.0 33.0 40.0 15.0 41.0 43 34.03247650501811 38.0 33.0 40.0 15.0 41.0 44 33.81940532824839 38.0 33.0 40.0 12.0 41.0 45 33.65701217654062 38.0 33.0 40.0 11.0 41.0 46 33.72485625156079 38.0 33.0 40.0 12.0 41.0 47 33.62010093411091 38.0 33.0 40.0 11.0 41.0 48 33.60200224221624 38.0 33.0 40.0 11.0 41.0 49 33.51762127548786 38.0 33.0 40.0 10.0 41.0 50 33.09862063382771 37.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 2.0 13 5.0 14 13.0 15 44.0 16 139.0 17 451.0 18 1188.0 19 2872.0 20 5619.0 21 9962.0 22 15999.0 23 24325.0 24 38539.0 25 61695.0 26 85534.0 27 91441.0 28 81772.0 29 74267.0 30 75536.0 31 87666.0 32 107995.0 33 137320.0 34 192237.0 35 271618.0 36 290960.0 37 433849.0 38 525920.0 39 582544.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.51336656547418 21.588535505247204 26.57391921833104 22.324178710947574 2 38.105705462050004 22.922332242438145 27.10890688676683 11.86305540874502 3 25.158797604510436 22.69432879316321 40.1357644116464 12.011109190679957 4 22.310989203669436 25.11379075503053 39.67169378589804 12.903526255401996 5 20.202011993700292 29.074643547314853 38.33570921574627 12.38763524323858 6 17.89044145155841 37.18584672104786 35.18347948578424 9.74023234160949 7 79.19305219263056 2.728759033015337 16.443502495536038 1.6346862788180576 8 48.796144913304 39.95361169027911 9.636560314022791 1.6136830823941017 9 73.885150646364 4.984946146491669 18.256153358339223 2.873749848805115 10 31.896291716895664 33.20961658852457 24.07441382485397 10.8196778697258 11 22.126836177880822 24.52704520969285 38.76721238513486 14.578906227291466 12 21.531620593509075 22.132743326875058 39.135643455738425 17.199992623877446 13 19.009080444430136 24.893382211605328 40.39796056462343 15.699576779341108 14 16.954517765672463 27.5667890707117 38.31980054464539 17.15889261897045 15 16.125485347301293 24.478287789422954 43.54547082634138 15.85075603693437 16 18.03286937730836 24.117607898452047 41.7010651308496 16.148457593389995 17 18.519318408770335 23.725829524680787 38.17984174466552 19.57501032188336 18 19.417330074920777 23.63459689021423 39.71038717454813 17.23768586031687 19 20.671927258929717 25.7711720502464 36.63851342376168 16.918387267062208 20 21.932025280097314 24.247315138272608 36.21873078809181 17.601928793538267 21 20.572443368725178 25.793269163150768 36.99041072813269 16.643876739991367 22 19.81826609237093 23.526049120600543 36.75499990154752 19.90068488548101 23 17.557734567729526 26.930504736189537 36.59578817151235 18.915972524568584 24 17.231622437539713 24.924199401596432 39.58321157001081 18.260966590853045 25 17.371081161414253 26.39945516708324 38.08854660068579 18.140917070816716 26 17.464939195433804 27.367790035546037 37.31111578543359 17.856154983586563 27 17.92585309076725 26.228366629546436 37.505864173703934 18.33991610598238 28 17.361517205899773 26.126944944433735 39.51182570597463 16.999712143691866 29 18.177672664558635 24.345736366753314 38.44710116820904 19.02948980047901 30 18.872184610595426 25.54138707984621 37.376625755232126 18.209802554326238 31 20.431765709343892 25.42411923314579 35.1232203150917 19.020894742418612 32 21.062736735246894 25.550982290117275 35.52324994460094 17.863031030034886 33 20.53946960052983 27.20439016812871 33.83786845060482 18.41827178073663 34 19.714812848080317 27.186512447363082 33.81323970241721 19.28543500213939 35 20.205793819246868 28.095994609179588 32.52298084114676 19.175230730426787 36 22.136900209500634 27.636018356543634 31.070728576505235 19.156352857450493 37 20.583976373904402 29.956277721015667 31.06654043912308 18.39320546595685 38 20.79782141844712 29.683173657991073 30.37184096454679 19.14716395901501 39 20.5695991858761 29.93933764294754 30.22472482530935 19.266338345867013 40 21.540246906326058 27.973475963373172 31.224158176572498 19.262118953728272 41 19.09606243200137 28.015919922813254 31.061914735148754 21.82610291003662 42 20.641203833208365 28.23379683095521 30.63694380988607 20.488055525950355 43 20.44679924726044 28.061895669747237 31.336487771732763 20.154817311259556 44 20.635671741293127 29.20019390450984 30.913329622351903 19.25080473184513 45 19.40695349573513 29.25288942410923 31.143239611778416 20.19691746837722 46 20.76672293564677 28.823824125734138 30.47057474059333 19.938878198025762 47 20.271491317584893 27.754130081671804 31.23562867223856 20.738749928504742 48 20.68636695647119 26.802203960415227 31.461850600388246 21.04957848272534 49 20.58260116461474 26.488156166266553 31.558927874335872 21.37031479478283 50 19.706874139908166 27.154070010029653 32.34701656158296 20.792039288479216 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1226.0 1 2127.5 2 3029.0 3 47175.0 4 91321.0 5 67950.5 6 44580.0 7 44819.0 8 45058.0 9 45974.0 10 46890.0 11 46533.0 12 46176.0 13 44377.5 14 42579.0 15 40458.0 16 38337.0 17 36175.0 18 34013.0 19 32445.0 20 30877.0 21 30269.0 22 29661.0 23 31134.5 24 32608.0 25 36110.0 26 39612.0 27 45058.5 28 50505.0 29 58305.5 30 66106.0 31 76561.5 32 87017.0 33 97162.5 34 107308.0 35 116637.5 36 125967.0 37 136364.5 38 146762.0 39 162496.5 40 178231.0 41 196043.0 42 213855.0 43 227913.5 44 241972.0 45 254334.0 46 266696.0 47 269238.0 48 271780.0 49 258039.5 50 244299.0 51 215805.5 52 187312.0 53 164279.0 54 141246.0 55 123970.0 56 106694.0 57 93865.0 58 81036.0 59 70712.0 60 60388.0 61 50643.0 62 40898.0 63 32792.5 64 24687.0 65 19046.0 66 13405.0 67 10309.0 68 7213.0 69 5771.0 70 4329.0 71 3537.0 72 2745.0 73 2071.0 74 1397.0 75 1101.0 76 805.0 77 624.5 78 444.0 79 345.0 80 246.0 81 186.0 82 126.0 83 87.5 84 49.0 85 32.0 86 15.0 87 12.0 88 9.0 89 6.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3199513.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.99616390347953 #Duplication Level Percentage of deduplicated Percentage of total 1 73.60401440562852 28.70274209715958 2 7.833302814330301 6.109375209064237 3 3.877125359863779 4.53579048022755 4 2.74303971657558 4.278721055253415 5 1.931893804097451 3.7668223714350386 6 1.5403244335205817 3.6040046444461717 7 1.2058423038099608 3.291625688478581 8 1.0331571419746393 3.2231332197194797 9 0.8399322129883773 2.9478720820956332 >10 5.3217851705073445 34.59755278425895 >50 0.052357799403047384 1.3196887160297923 >100 0.0144962015381139 1.014343645380648 >500 0.0017604101691902332 0.46441213223754363 >1k 7.921845760844646E-4 0.4164606356361054 >5k 0.0 0.0 >10k+ 1.7604101690765878E-4 1.7274552385772917 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31261 0.9770549455495258 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19066 0.5959031890165785 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0538832003495532 0.0 2 0.0 0.0 0.0 0.16830686420089558 0.0 3 0.0 0.0 0.0 0.2953261949552948 0.0 4 0.0 0.0 0.0 0.38387092035569165 0.0 5 0.0 0.0 0.0 0.5777129206851168 0.0 6 0.0 0.0 0.0 1.013654265508532 0.0 7 0.0 0.0 0.0 1.3509243437985718 0.0 8 3.1254756583267515E-5 0.0 0.0 2.1975844448827058 0.0 9 3.1254756583267515E-5 0.0 0.0 3.0495265998294117 0.0 10 3.1254756583267515E-5 0.0 0.0 4.125096538129396 0.0 11 3.1254756583267515E-5 0.0 0.0 4.636768158154069 0.0 12 3.1254756583267515E-5 0.0 0.0 5.179788299031759 0.0 13 3.1254756583267515E-5 0.0 0.0 5.535404919436177 0.0 14 3.1254756583267515E-5 0.0 0.0 5.724808744330778 0.0 15 3.1254756583267515E-5 0.0 0.0 5.871049750383887 0.0 16 3.1254756583267515E-5 0.0 0.0 6.076362246379371 0.0 17 3.1254756583267515E-5 0.0 0.0 6.287050560507177 0.0 18 3.1254756583267515E-5 0.0 0.0 6.680266653081266 0.0 19 3.1254756583267515E-5 0.0 0.0 6.845260513084335 0.0 20 3.1254756583267515E-5 0.0 0.0 7.040383958433674 0.0 21 3.1254756583267515E-5 0.0 0.0 7.20859705836482 0.0 22 3.1254756583267515E-5 0.0 0.0 7.3919999699954335 0.0 23 3.1254756583267515E-5 0.0 0.0 7.6019381699652415 0.0 24 3.1254756583267515E-5 3.1254756583267515E-5 0.0 7.769963741356888 0.0 25 3.1254756583267515E-5 3.1254756583267515E-5 0.0 7.926300033786392 0.0 26 3.1254756583267515E-5 3.1254756583267515E-5 0.0 8.080354728985318 0.0 27 3.1254756583267515E-5 3.1254756583267515E-5 0.0 8.27866615950615 0.0 28 3.1254756583267515E-5 3.1254756583267515E-5 0.0 8.444316369397468 0.0 29 3.1254756583267515E-5 3.1254756583267515E-5 0.0 8.61765524940827 0.0 30 3.1254756583267515E-5 3.1254756583267515E-5 0.0 8.849971855091697 0.0 31 3.1254756583267515E-5 2.8129280924940765E-4 0.0 9.031812028893148 0.0 32 3.1254756583267515E-5 2.8129280924940765E-4 0.0 9.21646513078709 0.0 33 6.250951316653503E-5 3.1254756583267514E-4 0.0 9.396586292976462 0.0 34 9.376426974980255E-5 3.1254756583267514E-4 0.0 9.577457569323832 0.0 35 9.376426974980255E-5 3.1254756583267514E-4 0.0 9.762985804402108 0.0 36 9.376426974980255E-5 3.1254756583267514E-4 0.0 9.943325749887562 0.0 37 9.376426974980255E-5 3.1254756583267514E-4 0.0 10.138886761829065 0.0 38 9.376426974980255E-5 3.1254756583267514E-4 0.0 10.341448839245222 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTAA 55 1.8189894E-12 44.0 31 CGTTTTT 43790 0.0 43.502625 1 CGACGGT 260 0.0 42.307693 28 GAGCGAT 2080 0.0 41.56731 7 GTTTTTA 19350 0.0 40.13437 2 TATCGCG 85 0.0 38.823532 1 AGCGATA 445 0.0 38.5618 8 CACGACG 295 0.0 38.0339 26 AGCGATC 290 0.0 37.931038 8 ACGTCGC 140 0.0 37.714283 20 GACCGAT 1440 0.0 37.583332 9 GACGGTC 295 0.0 37.28814 29 AATCGCG 65 1.0913936E-11 37.23077 1 TATTGCG 215 0.0 36.837208 1 ACGAGAT 580 0.0 36.793106 5 GAGACCG 705 0.0 36.51064 7 GCGCGAC 235 0.0 36.510635 9 CGGTCTA 290 0.0 36.413795 31 ATCGCGA 85 0.0 36.235294 2 GTTTTTT 31690 0.0 36.176083 2 >>END_MODULE