##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546750_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1967994 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.492634123884525 31.0 31.0 33.0 30.0 34.0 2 31.8966521239394 31.0 31.0 34.0 30.0 34.0 3 32.03036899502742 33.0 31.0 34.0 30.0 34.0 4 35.7241688744986 37.0 35.0 37.0 35.0 37.0 5 35.613629411471784 37.0 35.0 37.0 33.0 37.0 6 35.66696189114398 37.0 35.0 37.0 33.0 37.0 7 36.01091263489624 37.0 35.0 37.0 35.0 37.0 8 22.088383399542884 35.0 0.0 37.0 0.0 37.0 9 29.962080677075235 37.0 18.0 39.0 17.0 39.0 10 34.36673536606311 35.0 32.0 39.0 27.0 39.0 11 36.00679575242607 37.0 35.0 39.0 32.0 39.0 12 36.442359580364574 37.0 35.0 39.0 32.0 39.0 13 36.568775616185825 39.0 35.0 39.0 33.0 39.0 14 37.66322763179156 39.0 36.0 41.0 33.0 41.0 15 37.917862554459006 40.0 36.0 41.0 33.0 41.0 16 37.95569752753311 40.0 36.0 41.0 33.0 41.0 17 37.91038184059504 40.0 36.0 41.0 33.0 41.0 18 37.874689658606684 40.0 36.0 41.0 33.0 41.0 19 37.86740965673676 40.0 36.0 41.0 33.0 41.0 20 37.746407763438306 40.0 36.0 41.0 33.0 41.0 21 37.659755568360474 40.0 35.0 41.0 33.0 41.0 22 37.61568632831197 39.0 35.0 41.0 33.0 41.0 23 37.48738055095696 39.0 35.0 41.0 33.0 41.0 24 37.36034865959957 39.0 35.0 41.0 33.0 41.0 25 37.21319069062202 39.0 35.0 41.0 32.0 41.0 26 37.16105943412429 39.0 35.0 41.0 32.0 41.0 27 37.046636829177324 39.0 35.0 41.0 32.0 41.0 28 37.06366127132502 39.0 35.0 41.0 32.0 41.0 29 36.944062837589954 39.0 35.0 41.0 32.0 41.0 30 36.84317330235763 39.0 35.0 41.0 31.0 41.0 31 36.73874615471389 39.0 35.0 41.0 31.0 41.0 32 36.498005583350356 39.0 35.0 41.0 30.0 41.0 33 36.33490193567663 39.0 35.0 41.0 30.0 41.0 34 36.18469619317945 39.0 35.0 41.0 30.0 41.0 35 36.00232978352576 39.0 35.0 41.0 29.0 41.0 36 35.85747466709756 39.0 35.0 41.0 29.0 41.0 37 35.81709090576496 39.0 35.0 41.0 28.0 41.0 38 35.71271812820567 38.0 35.0 40.0 28.0 41.0 39 35.62417669972571 38.0 35.0 40.0 27.0 41.0 40 35.53449858078836 38.0 35.0 40.0 27.0 41.0 41 35.50586993659533 38.0 35.0 40.0 27.0 41.0 42 35.27467309351553 38.0 35.0 40.0 26.0 41.0 43 35.3070248181651 38.0 35.0 40.0 26.0 41.0 44 35.08178734284759 38.0 34.0 40.0 26.0 41.0 45 34.889482894764924 38.0 34.0 40.0 24.0 41.0 46 34.95484081760412 38.0 34.0 40.0 25.0 41.0 47 34.8237260885958 37.0 34.0 40.0 24.0 41.0 48 34.822154437462714 37.0 34.0 40.0 25.0 41.0 49 34.73660641241793 37.0 34.0 40.0 24.0 41.0 50 34.28723715621084 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 1.0 13 10.0 14 9.0 15 44.0 16 96.0 17 245.0 18 633.0 19 1323.0 20 2452.0 21 4134.0 22 6875.0 23 9923.0 24 14454.0 25 20905.0 26 28383.0 27 33259.0 28 35324.0 29 38841.0 30 45887.0 31 57238.0 32 73345.0 33 97142.0 34 148160.0 35 225430.0 36 196448.0 37 284947.0 38 329706.0 39 312775.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.020016321187974 24.210846171278977 28.867770938326032 14.90136656920702 2 32.00639839349104 25.721572321866837 28.946023209420353 13.326006075221775 3 28.435452547111424 25.151347006139247 33.22250982472508 13.190690622024254 4 24.889608403277652 27.31339628067972 32.709906635894214 15.087088680148414 5 23.063739015464478 31.33911993634127 31.288713278597395 14.30842776959686 6 20.553670387206466 39.882946797602024 28.85440707644434 10.70897573874717 7 85.90371718612964 4.147217928509945 8.140573599309754 1.8084912860506688 8 53.608801652850566 39.984674750024645 4.761650696089521 1.6448729010352672 9 81.71564547452888 5.166326726605874 9.911107452563371 3.206920346301869 10 43.36059967662503 27.46873212011825 15.930739626238699 13.23992857701802 11 35.93923558710036 23.972430810256533 24.855055452404834 15.233278150238263 12 32.28719193249573 21.68482220982381 28.568532221134816 17.45945363654564 13 23.41003072163838 30.077683163668183 29.20506871464039 17.307217400053048 14 18.753715712547905 33.05284467330693 30.5463329664623 17.647106647682868 15 17.602543503689542 23.063789828627527 41.36857124564404 17.96509542203889 16 19.939694938094323 21.120084715705435 39.076237021047824 19.863983325152414 17 19.97307918621703 21.443002366877135 30.296128951612655 28.287789495293175 18 22.883098220827907 23.065822355149457 33.0743894544394 20.97668996958324 19 27.352115910922493 24.828734233945834 27.544240480407968 20.274909374723705 20 28.967974495857202 24.03894524068671 26.633109653789592 20.35997060966649 21 24.482391714608887 26.519948739681116 28.821530959952113 20.176128585757883 22 23.32669713423923 23.663080273618718 28.262484540095144 24.747738052046905 23 21.53284003914646 27.30308120858092 27.358772435281814 23.805306316990805 24 21.513988355655556 24.71689446207661 33.75269436797063 20.016422814297197 25 21.10240173496464 24.626751910828997 32.00472155911044 22.26612479509592 26 19.686035628157402 29.274530308527364 28.48789173137723 22.551542331938006 27 20.379838556418363 28.58575788340818 29.348056955458198 21.686346604715258 28 19.502091977922696 26.522895903137915 33.97200397968693 20.003008139252458 29 20.08969539541279 25.4772626339308 32.97510053384309 21.457941436813325 30 21.88507688539701 27.33763415945374 30.57021515309498 20.207073802054275 31 26.361055978829206 25.596622753931157 26.792764612087232 21.249556655152404 32 27.358467556303523 26.188087971812923 26.790376393423966 19.663068078459588 33 26.7338721561143 26.476960803742287 25.894946834187504 20.894220205955914 34 21.803725011356743 27.424626294592365 28.617262044498105 22.154386649552794 35 22.801746346787645 26.39205200828864 28.779914979415587 22.026286665508128 36 27.49083584604425 25.94967261079048 26.429806188433503 20.129685354731773 37 23.29976615782365 29.244753794981083 27.076505314548722 20.378974732646544 38 23.652358696215536 29.4954659414612 25.097485053308088 21.75469030901517 39 23.083048017422815 28.23214908175533 26.09840273903274 22.58640016178911 40 25.065117068446348 25.175991390217657 26.84505135686389 22.913840184472107 41 20.939647173721056 25.03467998378044 27.390022530556497 26.635650311942012 42 23.087976894238498 26.729959542559584 25.651602596349377 24.53046096685254 43 22.78157352105748 26.078077473813437 27.15867019919776 23.98167880593132 44 22.22582995679865 27.68626327112786 28.248155228115536 21.83975154395796 45 20.964291557799463 29.611828084841722 26.34576121675168 23.078119140607136 46 23.167651933898174 28.05567496648872 27.058314202177446 21.718358897435664 47 22.241988542647995 27.245916400151625 27.537990461353033 22.974104595847344 48 23.237824912067822 25.149924237573895 28.974326141238237 22.637924709120046 49 22.798189425374265 24.227716141411 29.689775476957752 23.284318956256982 50 21.486904939750833 27.913398109953587 27.872493513699737 22.727203436595843 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 985.0 1 1590.5 2 2196.0 3 13111.0 4 24026.0 5 17088.5 6 10151.0 7 10581.0 8 11011.0 9 11513.5 10 12016.0 11 12275.5 12 12535.0 13 12044.0 14 11553.0 15 11004.5 16 10456.0 17 10038.0 18 9620.0 19 9553.0 20 9486.0 21 9841.0 22 10196.0 23 10694.5 24 11193.0 25 12757.0 26 14321.0 27 16791.0 28 19261.0 29 22952.0 30 26643.0 31 30619.5 32 34596.0 33 39187.5 34 43779.0 35 48291.0 36 52803.0 37 60138.5 38 67474.0 39 83030.0 40 98586.0 41 115662.5 42 132739.0 43 142043.5 44 151348.0 45 158175.5 46 165003.0 47 165909.5 48 166816.0 49 161546.0 50 156276.0 51 141509.0 52 126742.0 53 115792.0 54 104842.0 55 100821.0 56 96800.0 57 93485.0 58 90170.0 59 84777.0 60 79384.0 61 71555.5 62 63727.0 63 55121.5 64 46516.0 65 39566.5 66 32617.0 67 27524.5 68 22432.0 69 18975.0 70 15518.0 71 12946.5 72 10375.0 73 8313.0 74 6251.0 75 4998.0 76 3745.0 77 2844.5 78 1944.0 79 1461.0 80 978.0 81 746.0 82 514.0 83 347.5 84 181.0 85 141.5 86 102.0 87 78.0 88 54.0 89 39.5 90 25.0 91 15.5 92 6.0 93 3.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1967994.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.644479984000192 #Duplication Level Percentage of deduplicated Percentage of total 1 74.02046897530396 21.942983109447052 2 6.734009507364121 3.9925242010624538 3 2.9614175841746397 2.63369052894994 4 1.9800388325687024 2.34788886158504 5 1.545361406824771 2.2905717646331656 6 1.2673439253484255 2.2541850976701383 7 1.0847078740709888 2.2508920602969384 8 0.9150136049806646 2.170008199834974 9 0.8292537038192928 2.2124515342076143 >10 8.321196527151889 49.47183756676573 >50 0.3074431920041839 5.605181963228785 >100 0.03143606563260679 1.5545836876322925 >500 0.0015984005231292665 0.28088035399655825 >1k 3.552001162509481E-4 0.24223627155354538 >5k 3.552001162509481E-4 0.7500847991357011 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8820 0.44817209808566494 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5427 0.27576303586291423 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3569 0.18135217891924466 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.055691226700894415 0.0 2 0.0 0.0 0.0 0.17083385416825458 0.0 3 0.0 0.0 0.0 0.2682935008948198 0.0 4 0.0 0.0 0.0 0.37373081421996207 0.0 5 0.0 0.0 0.0 0.584097309239764 0.0 6 0.0 0.0 0.0 0.8943624828124476 0.0 7 0.0 0.0 0.0 1.090043973711302 0.0 8 0.0 0.0 0.0 1.5847101159861259 0.0 9 0.0 0.0 0.0 2.052750160823661 0.0 10 0.0 0.0 0.0 2.782732061174983 0.0 11 0.0 0.0 0.0 3.2773982034498075 0.0 12 0.0 0.0 0.0 3.7140357135235167 0.0 13 0.0 0.0 0.0 3.9380201362402527 0.0 14 0.0 0.0 0.0 4.043813141706733 0.0 15 0.0 0.0 0.0 4.1588033296849485 0.0 16 0.0 0.0 0.0 4.367848682465495 0.0 17 0.0 0.0 0.0 4.6025546825854144 0.0 18 0.0 0.0 0.0 4.979283473425224 0.0 19 0.0 0.0 0.0 5.1386335527445715 0.0 20 0.0 0.0 0.0 5.3295386063168895 0.0 21 0.0 0.0 0.0 5.516327793682298 0.0 22 0.0 0.0 0.0 5.705606826037071 0.0 23 0.0 0.0 0.0 5.919479429307203 0.0 24 0.0 0.0 0.0 6.083148627485653 0.0 25 0.0 0.0 0.0 6.223494583824951 0.0 26 0.0 0.0 0.0 6.358555971207229 0.0 27 0.0 0.0 0.0 6.517143853080853 0.0 28 0.0 0.0 0.0 6.660945104507433 0.0 29 0.0 0.0 0.0 6.823140720957483 0.0 30 0.0 0.0 0.0 7.015112850953814 0.0 31 0.0 0.0 0.0 7.185082881350248 0.0 32 5.0813163048261324E-5 0.0 0.0 7.346871992495912 0.0 33 5.0813163048261324E-5 0.0 0.0 7.500530997553854 0.0 34 5.0813163048261324E-5 0.0 0.0 7.664860766851931 0.0 35 5.0813163048261324E-5 0.0 0.0 7.8471783958690935 0.0 36 5.0813163048261324E-5 0.0 0.0 8.020298842374519 0.0 37 5.0813163048261324E-5 0.0 0.0 8.200990450174137 0.0 38 1.0162632609652265E-4 0.0 0.0 8.388541834985269 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGTAT 55 1.8189894E-12 44.0 42 TATCGCG 40 8.3182385E-9 44.0 1 TCGAACG 20 7.857851E-4 44.0 14 CGTTTTT 9720 0.0 43.004116 1 CGTAAGA 130 0.0 40.615387 2 GAGCGAT 1465 0.0 40.245735 7 GCGTAAG 130 0.0 38.92308 1 TCGTTAG 85 0.0 38.82353 1 GTCGTAA 35 7.2928506E-6 37.714287 42 GTTTTTA 4615 0.0 37.564465 2 CGAGTAC 95 0.0 37.05263 6 TCGCTAT 95 0.0 37.05263 23 TATAGCG 95 0.0 37.05263 1 CGACGGT 245 0.0 36.816326 28 CGTTAGA 90 0.0 36.666668 2 CCGTATC 30 1.3014325E-4 36.666664 44 TATTACG 60 1.9826984E-10 36.666664 1 CATACCG 30 1.3014325E-4 36.666664 1 AGACCGA 410 0.0 36.487804 8 GCGATAT 205 0.0 36.487804 9 >>END_MODULE