##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546748_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1229287 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.972983526222926 31.0 31.0 34.0 31.0 34.0 2 32.41645767017792 34.0 31.0 34.0 31.0 34.0 3 32.54460349779995 34.0 31.0 34.0 31.0 34.0 4 36.14015685515262 37.0 35.0 37.0 35.0 37.0 5 36.0748075917178 37.0 35.0 37.0 35.0 37.0 6 36.12392874894146 37.0 35.0 37.0 35.0 37.0 7 36.30237771976764 37.0 36.0 37.0 35.0 37.0 8 21.651977935177058 35.0 0.0 37.0 0.0 37.0 9 29.859185039783224 37.0 18.0 39.0 17.0 39.0 10 34.85505337646945 37.0 32.0 39.0 29.0 39.0 11 36.60702667481231 37.0 35.0 39.0 34.0 39.0 12 37.000764670902726 39.0 35.0 39.0 34.0 39.0 13 37.05929290718929 39.0 35.0 39.0 34.0 39.0 14 38.28761387698723 40.0 37.0 41.0 34.0 41.0 15 38.52369137556974 40.0 37.0 41.0 35.0 41.0 16 38.57996952705105 40.0 37.0 41.0 35.0 41.0 17 38.57898114923529 40.0 37.0 41.0 35.0 41.0 18 38.556379429701934 40.0 37.0 41.0 35.0 41.0 19 38.519754133900385 40.0 37.0 41.0 35.0 41.0 20 38.417878005705745 40.0 36.0 41.0 35.0 41.0 21 38.34635443147125 40.0 36.0 41.0 35.0 41.0 22 38.294558553047416 40.0 36.0 41.0 35.0 41.0 23 38.19193890442183 40.0 35.0 41.0 34.0 41.0 24 38.06247117231371 40.0 35.0 41.0 34.0 41.0 25 37.93884178389587 40.0 35.0 41.0 34.0 41.0 26 37.86860513452107 40.0 35.0 41.0 34.0 41.0 27 37.801453200107055 40.0 35.0 41.0 34.0 41.0 28 37.830226790001035 40.0 35.0 41.0 34.0 41.0 29 37.774903663668454 40.0 35.0 41.0 34.0 41.0 30 37.700763125291324 40.0 35.0 41.0 34.0 41.0 31 37.57224309701478 40.0 35.0 41.0 34.0 41.0 32 37.34147355336874 40.0 35.0 41.0 33.0 41.0 33 37.17069732291971 40.0 35.0 41.0 33.0 41.0 34 37.01563996039981 40.0 35.0 41.0 33.0 41.0 35 36.858544017792426 40.0 35.0 41.0 33.0 41.0 36 36.72770882633591 40.0 35.0 41.0 32.0 41.0 37 36.642429310649185 40.0 35.0 41.0 32.0 41.0 38 36.57040870032792 40.0 35.0 41.0 32.0 41.0 39 36.51925628433393 40.0 35.0 41.0 31.0 41.0 40 36.390164379839696 39.0 35.0 41.0 31.0 41.0 41 36.38083295438738 39.0 35.0 41.0 31.0 41.0 42 36.1598137782308 39.0 35.0 41.0 30.0 41.0 43 36.16408129265176 39.0 35.0 41.0 31.0 41.0 44 35.96339748162959 39.0 35.0 41.0 30.0 41.0 45 35.8010952690462 39.0 35.0 41.0 29.0 41.0 46 35.831057352758144 39.0 35.0 40.0 30.0 41.0 47 35.76191808747672 38.0 35.0 40.0 30.0 41.0 48 35.769862530068245 38.0 35.0 40.0 30.0 41.0 49 35.69496382862586 38.0 35.0 40.0 29.0 41.0 50 35.23539905652626 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 0.0 13 3.0 14 3.0 15 14.0 16 26.0 17 58.0 18 195.0 19 438.0 20 878.0 21 1642.0 22 2692.0 23 4470.0 24 7370.0 25 11013.0 26 14358.0 27 15617.0 28 14905.0 29 14477.0 30 15980.0 31 20106.0 32 27706.0 33 41369.0 34 79730.0 35 168796.0 36 109593.0 37 186606.0 38 249767.0 39 241473.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.030009265533597 25.239996843698826 31.656317849289874 13.073676041477702 2 31.028962317180607 26.319077644195378 29.409975050578097 13.241984988045916 3 27.166235386854332 25.48875893099008 33.60590325936904 13.739102422786543 4 24.148063064199 28.253288288251643 32.98082547037429 14.617823177175064 5 22.792968607005523 32.14050095705885 31.568787435318196 13.497743000617431 6 20.255562777447413 40.41139294566688 28.428674508068497 10.904369768817208 7 85.76207183513695 4.903330141781375 7.5098003964899975 1.8247976265916745 8 52.04634881846143 41.86882314707631 4.246526645120301 1.838301389341952 9 82.01550980365042 5.796530834540673 9.13952559491803 3.0484337668908887 10 46.486703267829235 26.583946629224908 14.849339495170778 12.080010607775076 11 40.74589579162555 22.72862236402077 23.06133555467519 13.464146289678489 12 35.569968607819 23.13137615544621 26.051605524177834 15.247049712556954 13 21.077095910068195 38.30106395007838 27.15330105988268 13.468539079970748 14 16.206467651573636 41.065593307339945 28.410859302994336 14.317079738092081 15 13.963948207375495 24.647051502212257 46.90597069683483 14.483029593577415 16 15.503133117001969 21.14746190271271 44.01396907312938 19.335435907155937 17 16.714160322203035 21.17170359728851 29.51491392978206 32.5992221507264 18 20.970041983686478 24.183856170284077 34.04607711624706 20.800024729782386 19 26.69466121418351 26.194289860707876 27.27206909371042 19.838979831398202 20 28.816216229407775 24.482809954062805 26.076823394374138 20.62415042215528 21 21.92710083162028 29.420631634435246 28.392067922299674 20.2601996116448 22 21.990877638826408 25.86889798720722 26.251721526380738 25.88850284758563 23 18.521793527467548 31.463441816272358 25.660647188166802 24.354117468093293 24 19.69938671766642 25.891838114289012 35.94791126889002 18.46086389915455 25 16.89873886244628 26.87167439336786 34.956198186428395 21.273388557757464 26 16.376566253446104 34.64056806913276 28.768302276034806 20.214563401386332 27 18.139620772041027 33.71352662152939 29.038458879008726 19.108393727420854 28 15.671848803412058 29.18569870176777 37.14974615366469 17.992706341155483 29 16.56480545226623 25.525853604569154 36.28306489859569 21.626276044568925 30 18.200550400354025 30.998944916850174 31.47906062620039 19.321444056595407 31 26.223493781354556 28.29428766431273 25.13278022138036 20.349438332952356 32 26.759332849041762 28.878854165056655 26.232116666002327 18.129696319899256 33 25.65511552631729 29.564617538459288 24.696429719015985 20.083837216207442 34 19.435249864352265 29.799794515031884 27.70752476842267 23.057430852193182 35 19.148742319734936 28.17519423861149 29.322770028479923 23.353293413173652 36 28.18877934933014 26.58427202109841 26.370408212240104 18.856540417331345 37 20.032994735972967 32.00155862707407 27.82214405586328 20.14330258108969 38 21.742684987313783 32.07281944737071 23.81486178573433 22.36963377958117 39 20.681175347986272 31.320350739900448 26.450454613121266 21.548019298992017 40 23.865053482221807 26.97685731647695 25.60980470793232 23.54828449336892 41 18.437110292389004 26.08032135701427 26.967827691987306 28.514740658609423 42 22.290319510415387 27.482190896023468 25.24837568444147 24.979113909119675 43 21.624405041296296 27.972963189230832 26.234150365211704 24.16848140426117 44 20.35114664028823 31.354760930523142 27.23033758593396 21.063754843254667 45 18.066977036282008 35.00874897399875 24.433187693353954 22.491086296365292 46 22.681115150489674 31.22671922830063 26.22023986261955 19.87192575859014 47 21.3771072174358 28.603572640075097 26.68839742061862 23.330922721870483 48 23.100626623400395 25.88484218900875 28.774810113504824 22.239721074086034 49 21.678176048392277 24.387876874968985 30.323105995589312 23.610841081049422 50 19.88965961569593 30.91824773222201 27.01850747628503 22.17358517579703 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1266.0 1 1481.0 2 1696.0 3 6086.5 4 10477.0 5 7937.0 6 5397.0 7 5982.5 8 6568.0 9 7334.0 10 8100.0 11 8487.5 12 8875.0 13 8739.5 14 8604.0 15 8243.0 16 7882.0 17 7763.5 18 7645.0 19 7462.5 20 7280.0 21 7087.5 22 6895.0 23 7215.5 24 7536.0 25 8090.5 26 8645.0 27 10089.0 28 11533.0 29 13871.0 30 16209.0 31 19531.0 32 22853.0 33 26023.0 34 29193.0 35 32651.5 36 36110.0 37 41464.0 38 46818.0 39 59757.0 40 72696.0 41 89732.5 42 106769.0 43 116606.0 44 126443.0 45 129364.5 46 132286.0 47 126414.5 48 120543.0 49 112457.5 50 104372.0 51 91251.0 52 78130.0 53 68767.0 54 59404.0 55 52880.0 56 46356.0 57 41440.0 58 36524.0 59 32418.5 60 28313.0 61 24747.5 62 21182.0 63 17411.5 64 13641.0 65 11129.0 66 8617.0 67 7001.5 68 5386.0 69 4628.5 70 3871.0 71 3150.0 72 2429.0 73 1840.0 74 1251.0 75 981.0 76 711.0 77 530.5 78 350.0 79 281.5 80 213.0 81 162.5 82 112.0 83 89.0 84 66.0 85 39.5 86 13.0 87 17.0 88 21.0 89 12.5 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1229287.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.24462865079763 #Duplication Level Percentage of deduplicated Percentage of total 1 74.4899850015404 23.27411919576615 2 7.513953859492234 4.695413960781249 3 3.265676356859353 3.0610453519128047 4 2.0078241505608725 2.5093487992151062 5 1.3996254386039746 2.1865388539695467 6 1.1358924566911073 2.129432279793352 7 0.9634327486026255 2.1071468922074414 8 0.8063658554086577 2.0155681367141023 9 0.6781742639747174 1.9070372734576242 >10 7.402370928831904 47.6094179834285 >50 0.29984603901462153 5.870155074164881 >100 0.035010255414939066 1.6026611250815646 >500 7.89705001937989E-4 0.13274633266725677 >1k 0.0010529400025839851 0.8993687408404293 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3772 0.3068445367111179 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3729 0.30334657407098586 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2406 0.19572321191064415 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04864608508834796 0.0 2 0.0 0.0 0.0 0.17205095311347146 0.0 3 0.0 0.0 0.0 0.27902353152681186 0.0 4 0.0 0.0 0.0 0.42496178679185576 0.0 5 0.0 0.0 0.0 0.7019516191092886 0.0 6 0.0 0.0 0.0 1.098848356811713 0.0 7 0.0 0.0 0.0 1.3465529205140867 0.0 8 0.0 0.0 0.0 1.9909915259821345 0.0 9 0.0 0.0 0.0 2.6467374990543298 0.0 10 0.0 0.0 0.0 3.693035068295687 0.0 11 0.0 0.0 0.0 4.447700170912081 0.0 12 0.0 0.0 0.0 5.086119026720367 0.0 13 0.0 0.0 0.0 5.39068582031698 0.0 14 0.0 0.0 0.0 5.52678097140863 0.0 15 0.0 0.0 0.0 5.6739394461993005 0.0 16 0.0 0.0 0.0 5.9841192496138005 0.0 17 0.0 0.0 0.0 6.336681344551761 0.0 18 0.0 0.0 0.0 6.932067125089585 0.0 19 0.0 0.0 0.0 7.170253976492064 0.0 20 0.0 0.0 0.0 7.472298983069047 0.0 21 0.0 0.0 0.0 7.7630366220418825 0.0 22 0.0 0.0 0.0 8.050764386184838 0.0 23 0.0 0.0 0.0 8.386731495574264 0.0 24 0.0 0.0 0.0 8.6155633306136 0.0 25 0.0 0.0 0.0 8.800304566793596 0.0 26 0.0 0.0 0.0 8.993261947779486 0.0 27 0.0 0.0 0.0 9.207939236321543 0.0 28 0.0 0.0 0.0 9.412122636943204 0.0 29 0.0 0.0 0.0 9.61069302774698 0.0 30 0.0 0.0 0.0 9.889879255210541 0.0 31 0.0 0.0 0.0 10.134248552209533 0.0 32 0.0 0.0 0.0 10.349657972466966 0.0 33 0.0 0.0 0.0 10.570517706605536 0.0 34 0.0 0.0 0.0 10.797153146498744 0.0 35 0.0 0.0 0.0 11.05876821279327 0.0 36 0.0 0.0 0.0 11.294026537334243 0.0 37 0.0 0.0 0.0 11.539290661985362 0.0 38 0.0 0.0 0.0 11.77430494262121 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 30 2.5278605E-6 44.0 1 CGAACTA 20 7.856696E-4 44.0 37 TCCGCGA 30 2.5278605E-6 44.0 2 CGAGTCA 20 7.856696E-4 44.0 6 GACCGTA 20 7.856696E-4 44.0 9 TGTGCGA 75 0.0 44.0 2 ACGGGTA 80 0.0 44.0 5 TCGATAG 25 4.4430202E-5 44.0 1 ACGATAT 20 7.856696E-4 44.0 22 CCCGTAG 20 7.856696E-4 44.0 35 CGCTCCA 30 2.5278605E-6 44.0 15 CGAATAT 40 8.312782E-9 44.0 14 GGACCGT 25 4.4430202E-5 44.0 8 TCGGTCG 20 7.856696E-4 44.0 15 TAGTCCG 20 7.856696E-4 44.0 1 TCGAACG 25 4.4430202E-5 44.0 1 TAATACG 45 4.802132E-10 43.999996 1 TTGGCGA 45 4.802132E-10 43.999996 2 CTAGCGA 45 4.802132E-10 43.999996 2 TCACGAC 325 0.0 41.96923 25 >>END_MODULE