##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546741_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3828762 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50428728659551 31.0 31.0 33.0 30.0 34.0 2 31.896022265160383 31.0 31.0 34.0 30.0 34.0 3 32.01537598837431 33.0 31.0 34.0 30.0 34.0 4 35.71599018168275 37.0 35.0 37.0 35.0 37.0 5 35.60918072212376 37.0 35.0 37.0 33.0 37.0 6 35.658657028041965 37.0 35.0 37.0 33.0 37.0 7 36.04492104758666 37.0 35.0 37.0 35.0 37.0 8 21.823966598080528 35.0 0.0 37.0 0.0 37.0 9 29.8384402059987 37.0 18.0 39.0 17.0 39.0 10 34.279498438398626 35.0 32.0 39.0 27.0 39.0 11 35.88850181860351 37.0 35.0 39.0 32.0 39.0 12 36.54412496780944 38.0 35.0 39.0 32.0 39.0 13 36.77511947726184 39.0 35.0 39.0 33.0 39.0 14 37.9504845169274 40.0 37.0 41.0 33.0 41.0 15 38.15593212636356 40.0 37.0 41.0 33.0 41.0 16 38.176731016448656 40.0 37.0 41.0 33.0 41.0 17 38.122356782688506 40.0 37.0 41.0 33.0 41.0 18 38.06313450666299 40.0 37.0 41.0 33.0 41.0 19 38.075121932363515 40.0 37.0 41.0 33.0 41.0 20 37.94326756272654 40.0 36.0 41.0 33.0 41.0 21 37.867969855530326 40.0 36.0 41.0 33.0 41.0 22 37.84247022928038 40.0 36.0 41.0 33.0 41.0 23 37.686381394299254 39.0 36.0 41.0 33.0 41.0 24 37.582515183759135 39.0 35.0 41.0 33.0 41.0 25 37.46025817222382 39.0 35.0 41.0 33.0 41.0 26 37.40971650888721 39.0 35.0 41.0 33.0 41.0 27 37.299686164875226 39.0 35.0 41.0 32.0 41.0 28 37.2793224023849 39.0 35.0 41.0 32.0 41.0 29 37.17817900407495 39.0 35.0 41.0 32.0 41.0 30 37.045031527162045 39.0 35.0 41.0 31.0 41.0 31 36.96838873766507 39.0 35.0 41.0 31.0 41.0 32 36.68709441850917 39.0 35.0 41.0 30.0 41.0 33 36.50864404734481 39.0 35.0 41.0 30.0 41.0 34 36.37149449352036 39.0 35.0 41.0 30.0 41.0 35 36.19438293631205 39.0 35.0 41.0 29.0 41.0 36 36.11187950569923 39.0 35.0 41.0 29.0 41.0 37 36.11951434954693 39.0 35.0 41.0 29.0 41.0 38 36.029842544404694 39.0 35.0 41.0 28.0 41.0 39 35.94047684342876 39.0 35.0 41.0 27.0 41.0 40 35.90766832725565 39.0 35.0 41.0 27.0 41.0 41 35.89816342723836 39.0 35.0 41.0 27.0 41.0 42 35.64115241427908 39.0 35.0 41.0 26.0 41.0 43 35.68812321058347 39.0 35.0 41.0 26.0 41.0 44 35.51216607352455 39.0 35.0 40.0 26.0 41.0 45 35.30086095714489 38.0 35.0 40.0 24.0 41.0 46 35.372199943480425 38.0 35.0 40.0 25.0 41.0 47 35.250129676381036 38.0 34.0 40.0 24.0 41.0 48 35.25674382476633 38.0 34.0 40.0 24.0 41.0 49 35.15767080847543 38.0 34.0 40.0 24.0 41.0 50 34.72453236842614 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 4.0 12 4.0 13 11.0 14 26.0 15 39.0 16 122.0 17 368.0 18 949.0 19 2283.0 20 4256.0 21 7570.0 22 12306.0 23 18548.0 24 28799.0 25 42780.0 26 58025.0 27 65472.0 28 67219.0 29 72418.0 30 84552.0 31 105000.0 32 134032.0 33 175088.0 34 252774.0 35 357344.0 36 365000.0 37 562157.0 38 680015.0 39 731599.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.88329230179363 23.170648893819987 29.218112799907647 14.727946004478731 2 33.33116553079037 24.466315743835736 28.9283846841355 13.274134041238394 3 28.267022081811298 24.572799249470194 34.120088947811325 13.040089720907174 4 24.787855708973293 26.850323942830606 34.03191423232889 14.329906115867216 5 22.49983153823612 31.540351685479536 32.14866842075846 13.811148355525885 6 19.862503858949708 40.568282907112014 29.04134547929592 10.527867754642362 7 86.3541792360037 3.1273294083048255 8.881147483181248 1.6373438725102267 8 52.91749656938718 40.36336027154469 5.162556460809003 1.556586698259124 9 81.75478131051239 5.013683274123594 10.44805083209664 2.783484583267385 10 38.50257602849172 34.043667378646155 17.061676855338618 10.392079737523513 11 26.56937150964202 25.84921705762855 32.05767295015987 15.523738482569563 12 25.75069957338691 23.521467252339008 32.72914325831692 17.99868991595717 13 21.36191802990105 27.574970708547568 33.545412329102724 17.51769893244866 14 18.10008039152081 31.04954029527038 32.51599342032751 18.334385892881304 15 17.199058076736033 26.517683783948964 39.63832173428382 16.64493640503118 16 19.73452515460611 25.511771167808288 37.19810737778948 17.55559629979612 17 19.887263820524755 24.874228275353758 32.839074353537775 22.399433550583716 18 21.048109023229962 26.068374059291227 33.855146911717156 19.02837000576165 19 23.284706649303352 27.5223166130462 30.644970880927048 18.5480058567234 20 24.830898342597425 26.267315649288204 30.44757025900278 18.454215749111594 21 22.525845168751673 27.496929817000897 31.522147367739233 18.45507764650819 22 21.45918184520218 24.303835025525224 31.980781255142 22.256201874130593 23 19.63360480489516 28.189999796278798 31.530531278778884 20.645864120047158 24 18.98344686872676 26.49125226378657 34.410443898053735 20.11485696943294 25 19.469321937482665 27.768244670209324 32.553734079057406 20.2086993132506 26 19.4377451510436 29.804568683036447 31.1472742364242 19.610411929495747 27 20.334327388330745 28.327720553014263 31.69737372027825 19.640578338376738 28 18.411303706002098 28.282379526332534 34.51778930108479 18.788527466580582 29 19.755576345565487 25.398444719206886 33.976935625667 20.869043309560638 30 20.694678854418218 26.697271859676835 32.4724023065419 20.13564697936304 31 22.569488518743132 26.49039036638997 29.311171600637493 21.628949514229404 32 23.63019691482521 27.112210160882288 29.591549435561674 19.66604348873082 33 22.248784332899252 27.6488588217288 28.879047587705898 21.223309257666052 34 20.26002138550268 28.4651278925146 30.24160289931837 21.03324782266435 35 19.86485448821316 27.216186328635732 29.880154472907954 23.038804710243156 36 21.8737022567608 29.026614869244945 28.94510027000895 20.15458260398531 37 20.133009050967388 29.549655998466346 29.333633169154936 20.98370178141133 38 20.12859509157268 29.801408392582253 28.526714379217093 21.543282136627976 39 20.188118248143915 29.47255535862506 28.70982839884015 21.629497994390874 40 21.075402440788952 27.21488042348937 29.91562285668318 21.794094279038497 41 19.386423078791527 27.36098509126449 29.520638786114155 23.731953043829833 42 21.619599233381443 27.68289070984303 28.464370467529715 22.233139589245816 43 20.606660847553336 27.763386703064857 29.595911158750532 22.03404129063128 44 20.61300754656466 29.337864301829153 29.040796999134443 21.008331152471737 45 20.02558529362755 29.236552180574293 28.63792526148139 22.099937264316768 46 20.920992216282965 29.547096424379472 28.263861791357105 21.26804956798046 47 20.34736032169145 28.005057509450836 29.187789682409093 22.45979248644862 48 20.796017093776005 26.88359840595994 29.619130152252872 22.701254348011187 49 20.552700846905605 26.709207832714593 30.094610216043723 22.643481104336075 50 19.436099710559184 27.65820910257676 30.11631435957628 22.78937682728778 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 931.0 1 2267.0 2 3603.0 3 26251.5 4 48900.0 5 36753.0 6 24606.0 7 24728.5 8 24851.0 9 25098.0 10 25345.0 11 25451.0 12 25557.0 13 24728.5 14 23900.0 15 22823.5 16 21747.0 17 21160.0 18 20573.0 19 20617.0 20 20661.0 21 22027.0 22 23393.0 23 26206.5 24 29020.0 25 33841.5 26 38663.0 27 45881.5 28 53100.0 29 65774.0 30 78448.0 31 91499.0 32 104550.0 33 118090.5 34 131631.0 35 146452.0 36 161273.0 37 173403.5 38 185534.0 39 205261.5 40 224989.0 41 250312.5 42 275636.0 43 298002.0 44 320368.0 45 335764.0 46 351160.0 47 350558.0 48 349956.0 49 331291.5 50 312627.0 51 278026.5 52 243426.0 53 218599.5 54 193773.0 55 170562.0 56 147351.0 57 133578.5 58 119806.0 59 106191.5 60 92577.0 61 78854.0 62 65131.0 63 51050.0 64 36969.0 65 28081.5 66 19194.0 67 15265.0 68 11336.0 69 9492.0 70 7648.0 71 6393.0 72 5138.0 73 3958.5 74 2779.0 75 2017.5 76 1256.0 77 954.0 78 652.0 79 492.5 80 333.0 81 288.5 82 244.0 83 171.5 84 99.0 85 56.0 86 13.0 87 10.5 88 8.0 89 4.5 90 1.0 91 2.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3828762.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.02043541571436 #Duplication Level Percentage of deduplicated Percentage of total 1 78.08775040677794 21.099650166247667 2 7.7095527359769545 4.166309435730185 3 2.7446008897910903 2.22480933253537 4 1.521117409482766 1.6440501889059127 5 0.9855114258568458 1.331447391690674 6 0.7648672844847174 1.2400228237207278 7 0.599376298384694 1.1336785992149496 8 0.47657923119859713 1.0301902669657999 9 0.4190511338838353 1.0190649689091038 >10 5.347633307366528 33.434896575760305 >50 1.0398559650720627 19.30740233442518 >100 0.30179776735766944 11.113295325507853 >500 0.0017820206466998133 0.32521734182223877 >1k 3.1447423176914817E-4 0.20345202632825773 >5k 1.048247439230494E-4 0.2825612438606013 >10k+ 1.048247439230494E-4 0.44395197837520695 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15674 0.4093751452819475 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9976 0.26055419480239306 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3830 0.10003233421142395 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04724764819542191 0.0 2 0.0 0.0 0.0 0.15882418390069689 0.0 3 0.0 0.0 0.0 0.24365578220845277 0.0 4 0.0 0.0 0.0 0.35343016881174644 0.0 5 0.0 0.0 0.0 0.6088390973374683 0.0 6 0.0 0.0 0.0 0.9405128864108033 0.0 7 0.0 0.0 0.0 1.1976978459355792 0.0 8 0.0 0.0 0.0 1.8921520846686213 0.0 9 0.0 0.0 0.0 2.493234105436692 0.0 10 0.0 0.0 0.0 3.3562284623593737 0.0 11 0.0 0.0 0.0 3.8691618857479257 0.0 12 0.0 0.0 0.0 4.3577793553111945 0.0 13 0.0 0.0 0.0 4.580096647428072 0.0 14 0.0 0.0 0.0 4.669211614615899 0.0 15 0.0 0.0 0.0 4.782616417526083 0.0 16 0.0 0.0 0.0 5.0223544842954455 0.0 17 0.0 0.0 0.0 5.322190305900445 0.0 18 0.0 0.0 0.0 5.750422721495878 0.0 19 0.0 0.0 0.0 5.968430526629756 0.0 20 0.0 0.0 0.0 6.196937809140396 0.0 21 0.0 0.0 0.0 6.444694133508429 0.0 22 0.0 0.0 0.0 6.724836905506271 0.0 23 0.0 0.0 0.0 7.037940723398321 0.0 24 0.0 0.0 0.0 7.264959274042106 0.0 25 0.0 0.0 0.0 7.459069014997537 0.0 26 2.611810292726474E-5 0.0 0.0 7.6543279524817684 0.0 27 2.611810292726474E-5 0.0 0.0 7.855776880359762 0.0 28 2.611810292726474E-5 0.0 0.0 8.072896669994114 0.0 29 2.611810292726474E-5 0.0 0.0 8.297904126712499 0.0 30 2.611810292726474E-5 0.0 0.0 8.576061922887869 0.0 31 2.611810292726474E-5 0.0 0.0 8.827814317003773 0.0 32 2.611810292726474E-5 0.0 0.0 9.066690486376537 0.0 33 2.611810292726474E-5 0.0 0.0 9.31167829183428 0.0 34 2.611810292726474E-5 0.0 0.0 9.559669679128659 0.0 35 2.611810292726474E-5 0.0 0.0 9.826988462589213 0.0 36 5.223620585452948E-5 0.0 0.0 10.091277546110204 0.0 37 5.223620585452948E-5 0.0 0.0 10.368286145756775 0.0 38 5.223620585452948E-5 0.0 0.0 10.637877204172002 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCGTG 30 2.5292702E-6 44.0 1 CGTTTTT 23070 0.0 43.160812 1 CGACGGT 665 0.0 42.345863 28 TATCGCG 110 0.0 42.0 1 CGGTCTA 675 0.0 41.066666 31 ACGGTCT 695 0.0 39.88489 30 CGGTCCG 50 1.3496901E-9 39.600002 29 CGTAAGA 240 0.0 39.416664 2 GACGGTC 715 0.0 39.076923 29 GAGCGAT 1465 0.0 39.04437 7 GCGCGAC 725 0.0 38.84138 9 CTAGCGA 170 0.0 38.823532 2 CACGACG 745 0.0 37.79866 26 GTCGTTA 35 7.294657E-6 37.714287 32 CTTACGA 130 0.0 37.23077 2 ACGGGAC 770 0.0 36.857143 5 ACGCGAG 245 0.0 36.816326 3 TCTCACG 795 0.0 36.80503 23 GACCGAT 1280 0.0 36.609375 9 ACGACGG 775 0.0 36.335484 27 >>END_MODULE