SRR1546740_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546740_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	746385
Sequences flagged as poor quality	0
Sequence length	50
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1747	0.23406150981062054	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1613	0.21610830871467138	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1368	0.18328342611386886	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	55	1.8189894E-12	44.000004	2
TACGAGT	30	2.526518E-6	44.0	4
CGGTCTA	35	1.4451689E-7	44.0	31
CGTTTTT	2050	0.0	40.887806	1
GAGCGAT	790	0.0	40.37975	7
TTCACGA	45	2.349043E-8	39.11111	2
CGAATAT	45	2.349043E-8	39.11111	14
CTATCTC	320	0.0	38.5	6
TACGCGG	40	4.1219573E-7	38.5	2
TGTACGA	40	4.1219573E-7	38.5	2
AATCGTT	155	0.0	38.322582	22
TTAATCG	150	0.0	38.13333	20
TCGATCA	150	0.0	38.13333	17
TAATCGT	150	0.0	38.13333	21
AGCGATA	185	0.0	38.054054	8
TCGTTTA	35	7.286775E-6	37.714287	38
CGCATCG	35	7.286775E-6	37.714287	21
TACCTAC	35	7.286775E-6	37.714287	31
ATGCGGA	35	7.286775E-6	37.714287	2
ACGAGCC	70	0.0	37.714287	5