##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546738_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 956922 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.465870781526604 31.0 31.0 33.0 30.0 34.0 2 31.848611485575628 31.0 31.0 34.0 30.0 34.0 3 31.959791916164537 31.0 31.0 34.0 30.0 34.0 4 35.66065572742606 37.0 35.0 37.0 33.0 37.0 5 35.60486852637937 37.0 35.0 37.0 33.0 37.0 6 35.63918898301011 37.0 35.0 37.0 33.0 37.0 7 35.992775795728384 37.0 35.0 37.0 35.0 37.0 8 18.652064640587216 32.0 0.0 37.0 0.0 37.0 9 28.005557401752704 31.0 17.0 39.0 17.0 39.0 10 33.58642188182527 32.0 32.0 39.0 27.0 39.0 11 35.730027107747546 37.0 35.0 39.0 32.0 39.0 12 36.43324429786336 37.0 35.0 39.0 32.0 39.0 13 36.662123976666855 39.0 35.0 39.0 33.0 39.0 14 37.79123063321776 39.0 36.0 41.0 33.0 41.0 15 37.993469687184536 40.0 37.0 41.0 33.0 41.0 16 38.046904554394196 40.0 37.0 41.0 33.0 41.0 17 37.98950071165675 40.0 36.0 41.0 33.0 41.0 18 37.940951300105965 40.0 36.0 41.0 33.0 41.0 19 37.94865830234857 40.0 36.0 41.0 33.0 41.0 20 37.88277309958387 40.0 36.0 41.0 33.0 41.0 21 37.75148444700822 40.0 36.0 41.0 33.0 41.0 22 37.73670999308199 40.0 36.0 41.0 33.0 41.0 23 37.58357629984471 39.0 36.0 41.0 33.0 41.0 24 37.44864471712428 39.0 35.0 41.0 32.0 41.0 25 37.287839552231006 39.0 35.0 41.0 32.0 41.0 26 37.27292297595833 39.0 35.0 41.0 32.0 41.0 27 37.14590217384489 39.0 35.0 41.0 32.0 41.0 28 37.1285590675102 39.0 35.0 41.0 32.0 41.0 29 37.016399455755014 39.0 35.0 41.0 32.0 41.0 30 36.8833290487626 39.0 35.0 40.0 31.0 41.0 31 36.893119815408156 39.0 35.0 41.0 31.0 41.0 32 36.6930230468105 39.0 35.0 41.0 31.0 41.0 33 36.5650962147385 39.0 35.0 41.0 30.0 41.0 34 36.40802176143928 39.0 35.0 41.0 30.0 41.0 35 36.16917157302267 39.0 35.0 41.0 30.0 41.0 36 36.064646857319616 39.0 35.0 41.0 30.0 41.0 37 35.96068018082978 39.0 35.0 40.0 29.0 41.0 38 35.87625219192369 38.0 35.0 40.0 29.0 41.0 39 35.76297441170754 38.0 35.0 40.0 28.0 41.0 40 35.70028069163422 38.0 35.0 40.0 28.0 41.0 41 35.681794336424495 38.0 35.0 40.0 28.0 41.0 42 35.51837140331187 38.0 35.0 40.0 27.0 41.0 43 35.50996528452685 38.0 35.0 40.0 28.0 41.0 44 35.25470205513093 38.0 34.0 40.0 27.0 41.0 45 35.12583993261729 38.0 34.0 40.0 26.0 41.0 46 35.10727520111357 38.0 34.0 40.0 26.0 41.0 47 34.9555648213752 37.0 34.0 40.0 26.0 41.0 48 34.91421766873371 37.0 34.0 40.0 26.0 41.0 49 34.859378298335706 37.0 34.0 40.0 26.0 41.0 50 34.21262234539492 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 2.0 11 2.0 12 2.0 13 2.0 14 9.0 15 22.0 16 42.0 17 129.0 18 283.0 19 638.0 20 1094.0 21 1857.0 22 2998.0 23 4438.0 24 6376.0 25 9479.0 26 12450.0 27 14942.0 28 16135.0 29 19095.0 30 23217.0 31 29572.0 32 37876.0 33 49985.0 34 73912.0 35 105877.0 36 107367.0 37 155195.0 38 156784.0 39 127141.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.490817433395826 23.909890252288065 27.89746708718161 14.7018252271345 2 32.961725198083016 25.208219687707047 28.127579886343923 13.702475227866012 3 29.606383801396564 25.168822537260088 31.55429596142632 13.670497699917025 4 25.321395056232376 28.497202488813087 30.890501002171543 15.290901452782984 5 23.861610455188615 31.137229575660296 30.432887946980003 14.568272022171087 6 21.559855453213533 39.795511023887 27.400247878092465 11.244385644806995 7 85.15699294195346 4.169827843857702 8.339655687715403 2.333523526473422 8 44.084470834613484 49.908351986891304 4.040036701005933 1.9671404774892833 9 79.06161630728523 5.064362612626735 11.496652809737888 4.377368270350143 10 44.22847421210924 24.047832529715066 16.601353088339486 15.122340169836205 11 35.2532390309764 23.709351441392297 24.640984322651168 16.396425204980133 12 30.49297643904101 21.15585178311294 28.68938116168298 19.66179061616307 13 24.13791301694391 25.50395957037251 31.207768240253646 19.150359172429937 14 20.483696685832285 27.729428312861444 31.594842630851833 20.192032370454434 15 20.17959666514094 21.595595043274166 38.765855524274706 19.45895276731019 16 22.79433433445986 20.470842973617493 36.132307544397555 20.602515147525086 17 22.867067535285006 22.036383320688625 30.032123830364437 25.064425313661932 18 24.896386539341762 21.92174492800876 31.900719180873676 21.281149351775795 19 27.65282854819933 25.85874292784574 26.364426776686084 20.124001747268846 20 29.165804527432748 23.945002831996756 26.047473043779952 20.841719596790544 21 26.004627336397323 27.295746152768984 26.93970877459187 19.759917736241825 22 25.012487956176155 23.275355776123863 27.41623664206696 24.29591962563302 23 23.554897891364188 26.922570491638815 26.37215990436002 23.150371712636975 24 24.133419442755 23.349029492476923 31.43641801526143 21.081133049506647 25 23.649576454507265 23.72199615015644 29.054928196864534 23.57349919847177 26 21.188142816237896 26.236203159714165 28.413914613730274 24.161739410317665 27 22.60654473405356 24.46322688787592 28.465851971216043 24.464376406854477 28 21.796551861071226 25.685583568984722 30.504889635727885 22.012974934216164 29 23.122051745074312 24.00624084303632 29.311584434259007 23.56012297763036 30 25.13945755244419 24.154006282643724 28.03467785253135 22.67185831238074 31 28.094452839416377 23.7316103088862 25.244063779492997 22.929873072204423 32 29.57827283728454 23.39605526887249 24.746949072129183 22.278722821713785 33 28.61476692980201 24.235831133572013 24.644537381312166 22.50486455531381 34 25.796250896102297 24.55142634404894 27.505585617218543 22.146737142630222 35 24.48276871051141 25.867625574498238 28.230827590963525 21.418778124026826 36 28.282869450174626 26.287931513749292 24.84340416460276 20.58579487147333 37 24.88865341166783 28.040425447424138 26.60718428461254 20.463736856295498 38 25.061290261902226 27.9272500788988 26.109338065171457 20.902121594027516 39 23.50881263049653 27.748552128595644 26.312175914024337 22.430459326883486 40 25.127962362658607 23.927551043867734 28.015449535071824 22.929037058401835 41 21.47646307640539 24.224753950687724 27.917635920169044 26.38114705273784 42 23.869448084587876 25.38137904656806 25.869611107279383 24.879561761564684 43 22.77750955668278 24.398226814724712 27.95410702230694 24.87015660628557 44 23.645605388944972 25.237689174248267 27.550625860832962 23.5660795759738 45 22.315611930752976 26.194506971310094 27.321140072022587 24.168741025914336 46 24.583090366821956 25.63834878913851 26.751814672460245 23.026746171579294 47 23.250170860320903 24.77276099828408 27.728174292157565 24.24889384923745 48 23.666296730559022 23.3885311446492 28.893682034690393 24.05149009010139 49 24.35977017980567 22.638522262002546 28.540570704822336 24.46113685336945 50 22.88995341313085 24.603677206710685 28.6449679284205 23.86140145173797 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 401.0 1 772.0 2 1143.0 3 6254.5 4 11366.0 5 7846.5 6 4327.0 7 4352.0 8 4377.0 9 4559.5 10 4742.0 11 4732.5 12 4723.0 13 4571.5 14 4420.0 15 4314.5 16 4209.0 17 4133.5 18 4058.0 19 4042.5 20 4027.0 21 4108.5 22 4190.0 23 4449.0 24 4708.0 25 5529.5 26 6351.0 27 7404.5 28 8458.0 29 10032.0 30 11606.0 31 13069.0 32 14532.0 33 16421.0 34 18310.0 35 20831.0 36 23352.0 37 26122.0 38 28892.0 39 33982.0 40 39072.0 41 44347.5 42 49623.0 43 54771.0 44 59919.0 45 66048.0 46 72177.0 47 76419.5 48 80662.0 49 78756.0 50 76850.0 51 70096.0 52 63342.0 53 59884.5 54 56427.0 55 54495.0 56 52563.0 57 51680.0 58 50797.0 59 48429.5 60 46062.0 61 43033.0 62 40004.0 63 35722.5 64 31441.0 65 27130.5 66 22820.0 67 19572.0 68 16324.0 69 13867.5 70 11411.0 71 9596.0 72 7781.0 73 6361.0 74 4941.0 75 4033.5 76 3126.0 77 2472.0 78 1818.0 79 1356.5 80 895.0 81 651.5 82 408.0 83 273.5 84 139.0 85 102.5 86 66.0 87 51.5 88 37.0 89 28.5 90 20.0 91 11.5 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 956922.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.92358597767566 #Duplication Level Percentage of deduplicated Percentage of total 1 68.71855851332751 24.68617045015456 2 7.869200603867571 5.653798089372277 3 4.252869072794631 4.583349233650071 4 3.18118542807867 4.571183529460521 5 2.4585964090617973 4.416079974266805 6 2.0636811732065503 4.448089683371765 7 1.7259905900816017 4.340263995161889 8 1.48532569412627 4.268658022223667 9 1.2722192132832897 4.1132408661749835 >10 6.9271137897678985 36.36006239827278 >50 0.03241194142893866 0.7879792346834404 >100 0.011679609978020845 0.9017682871186208 >500 2.9199024930061867E-4 0.054124978019031614 >1k 8.759707479018561E-4 0.8152312580696002 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3537 0.36962260246916673 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3233 0.3378540779708273 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1002 0.10471072877413207 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.044099728086510706 0.0 2 0.0 0.0 0.0 0.1324036859848556 0.0 3 0.0 0.0 0.0 0.21328802138523306 0.0 4 0.0 0.0 0.0 0.36188947479522887 0.0 5 0.0 0.0 0.0 0.5801935789959892 0.0 6 0.0 0.0 0.0 1.174494890910649 0.0 7 0.0 0.0 0.0 1.4826704788896066 0.0 8 0.0 0.0 0.0 2.400091125504482 0.0 9 0.0 0.0 0.0 3.3527288535533724 0.0 10 0.0 0.0 0.0 4.564948867305799 0.0 11 0.0 0.0 0.0 5.224459255822314 0.0 12 0.0 0.0 0.0 5.799741253728099 0.0 13 0.0 0.0 0.0 6.106662821003175 0.0 14 0.0 0.0 0.0 6.262161388284521 0.0 15 0.0 0.0 0.0 6.389548991453849 0.0 16 0.0 0.0 0.0 6.5848627160834425 0.0 17 0.0 0.0 0.0 6.786028537331151 0.0 18 0.0 0.0 0.0 7.079469382039497 0.0 19 0.0 0.0 0.0 7.2245177767884945 0.0 20 0.0 0.0 0.0 7.396632118396274 0.0 21 0.0 0.0 0.0 7.595498901686867 0.0 22 0.0 0.0 0.0 7.782974996917199 0.0 23 0.0 0.0 0.0 7.9943819872466095 0.0 24 0.0 0.0 0.0 8.176319491034796 0.0 25 0.0 0.0 0.0 8.321994896135735 0.0 26 0.0 0.0 0.0 8.461609201167912 0.0 27 0.0 0.0 0.0 8.623691377144636 0.0 28 0.0 0.0 0.0 8.770202796048162 0.0 29 1.0450172532348509E-4 0.0 0.0 8.929254421990507 0.0 30 1.0450172532348509E-4 0.0 0.0 9.148499041719178 0.0 31 1.0450172532348509E-4 0.0 0.0 9.305356131429729 0.0 32 1.0450172532348509E-4 0.0 0.0 9.483009064479655 0.0 33 1.0450172532348509E-4 0.0 0.0 9.65794495267117 0.0 34 1.0450172532348509E-4 0.0 0.0 9.840613968536621 0.0 35 1.0450172532348509E-4 0.0 0.0 10.031852125878599 0.0 36 1.0450172532348509E-4 0.0 0.0 10.207415024422053 0.0 37 1.0450172532348509E-4 0.0 0.0 10.396458645532238 0.0 38 1.0450172532348509E-4 0.0 0.0 10.620823849801761 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 45 4.802132E-10 44.0 1 ATATACG 20 7.85582E-4 44.0 1 CCGAATC 20 7.85582E-4 44.0 27 GTAACGA 35 1.445751E-7 44.0 2 TACCGAA 20 7.85582E-4 44.0 12 GCGTAAG 65 0.0 43.999996 1 CGTTTTT 4075 0.0 41.84049 1 GAGCGAT 1040 0.0 41.03846 7 GTATGCG 50 1.3478711E-9 39.600002 1 CTATCTC 475 0.0 39.368423 6 TATCTCT 475 0.0 39.368423 7 GTTTTTA 2330 0.0 39.184547 2 AACCGAT 45 2.3503162E-8 39.11111 8 TACGTAG 45 2.3503162E-8 39.11111 1 AACGTAG 85 0.0 38.823532 1 CGCATGA 40 4.1235762E-7 38.5 2 ACCCGCT 435 0.0 38.436783 34 AGCGATA 235 0.0 38.38298 8 GGTACGA 35 7.288927E-6 37.714287 2 ATGTCTC 695 0.0 37.352516 8 >>END_MODULE