##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546737_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1449595 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.530828955673826 31.0 31.0 33.0 30.0 34.0 2 31.912065783891364 31.0 31.0 34.0 30.0 34.0 3 32.01526219392313 33.0 31.0 34.0 30.0 34.0 4 35.708384065894265 37.0 35.0 37.0 35.0 37.0 5 35.651968308389584 37.0 35.0 37.0 33.0 37.0 6 35.68747132819857 37.0 35.0 37.0 33.0 37.0 7 36.028404485390745 37.0 35.0 37.0 35.0 37.0 8 18.701885699109063 32.0 0.0 37.0 0.0 37.0 9 28.053988872754115 32.0 17.0 39.0 17.0 39.0 10 33.68271482724485 32.0 32.0 39.0 27.0 39.0 11 35.8284727803283 37.0 35.0 39.0 32.0 39.0 12 36.53728386204423 37.0 35.0 39.0 33.0 39.0 13 36.7312663192133 39.0 35.0 39.0 33.0 39.0 14 37.81504144260983 40.0 36.0 41.0 33.0 41.0 15 38.056480603202964 40.0 37.0 41.0 33.0 41.0 16 38.129621721929226 40.0 37.0 41.0 33.0 41.0 17 38.10477823116112 40.0 37.0 41.0 33.0 41.0 18 38.09101300708129 40.0 37.0 41.0 33.0 41.0 19 38.08411659808429 40.0 37.0 41.0 34.0 41.0 20 37.9850151249142 40.0 36.0 41.0 33.0 41.0 21 37.86893994529507 40.0 36.0 41.0 33.0 41.0 22 37.850821781256144 40.0 36.0 41.0 33.0 41.0 23 37.72183333965694 39.0 36.0 41.0 33.0 41.0 24 37.56582976624505 39.0 35.0 41.0 33.0 41.0 25 37.412993974178995 39.0 35.0 41.0 33.0 41.0 26 37.39114925203246 39.0 35.0 41.0 33.0 41.0 27 37.28030380899493 39.0 35.0 41.0 32.0 41.0 28 37.279841610932706 39.0 35.0 41.0 33.0 41.0 29 37.16583942411501 39.0 35.0 41.0 32.0 41.0 30 37.041409497135405 39.0 35.0 41.0 32.0 41.0 31 37.05102045743811 39.0 35.0 41.0 32.0 41.0 32 36.863589485339006 39.0 35.0 41.0 31.0 41.0 33 36.74114494048337 39.0 35.0 41.0 31.0 41.0 34 36.56650788668559 39.0 35.0 41.0 31.0 41.0 35 36.38692738316564 39.0 35.0 41.0 30.0 41.0 36 36.210860274766404 39.0 35.0 41.0 30.0 41.0 37 36.141026286652476 39.0 35.0 41.0 30.0 41.0 38 36.04693448859854 39.0 35.0 40.0 30.0 41.0 39 35.96533583518155 38.0 35.0 40.0 29.0 41.0 40 35.869947123161985 38.0 35.0 40.0 29.0 41.0 41 35.833032674643604 38.0 35.0 40.0 29.0 41.0 42 35.68972920022489 38.0 35.0 40.0 29.0 41.0 43 35.688679251791015 38.0 35.0 40.0 29.0 41.0 44 35.447461532359036 38.0 35.0 40.0 28.0 41.0 45 35.34254878086638 38.0 35.0 40.0 27.0 41.0 46 35.32657811319714 38.0 34.0 40.0 27.0 41.0 47 35.209146692696926 38.0 34.0 40.0 27.0 41.0 48 35.16085872260873 37.0 34.0 40.0 27.0 41.0 49 35.128469676012955 37.0 34.0 40.0 27.0 41.0 50 34.50710163873358 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 2.0 13 5.0 14 9.0 15 27.0 16 55.0 17 137.0 18 361.0 19 764.0 20 1423.0 21 2524.0 22 4203.0 23 6275.0 24 9350.0 25 13828.0 26 17952.0 27 20542.0 28 22158.0 29 25486.0 30 31620.0 31 41283.0 32 54356.0 33 74412.0 34 112665.0 35 164174.0 36 164760.0 37 236140.0 38 242861.0 39 202221.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.985137227984367 25.52464653920578 28.859509035282265 14.630707197527585 2 32.009630276042614 25.882677575460733 28.725264642883015 13.382427505613636 3 29.026866124676204 24.90468027276584 32.43285193450585 13.63560166805211 4 25.554654920857207 28.02596587322666 31.272458859198604 15.146920346717533 5 23.383910678499856 31.480241032840205 30.73837865058861 14.397469638071323 6 21.487518927700496 39.48447669866411 27.4069653937824 11.621038979852994 7 84.68399794425339 4.141846515750951 8.771415464319345 2.4027400756763098 8 43.74145882125697 49.90007553834002 4.155574488046661 2.2028911523563477 9 77.99813051231551 5.490843994357045 11.847102121627074 4.663923371700371 10 43.68565012986386 25.812589033488663 16.28254788406417 14.219212952583307 11 35.030611998523725 23.101280012693202 25.774302477588567 16.093805511194507 12 30.92836274959558 20.96599395003432 28.50313363387705 19.602509666493052 13 24.181719721715375 27.28168902348587 30.431603309890004 18.10498794490875 14 19.491099238063043 29.55128846332941 31.24927997130233 19.708332327305214 15 18.448394206657724 22.60886661446818 39.80980894663682 19.132930232237282 16 21.319403005667102 20.7468982715862 37.02254767710981 20.911151045636885 17 21.879421493589586 22.458479782284016 29.93125666134334 25.730842062783054 18 23.50366826596394 22.659363477385064 32.450512039569674 21.386456217081324 19 26.886475187897307 26.323766293344004 26.421655703834517 20.368102814924168 20 27.934285093422645 24.594869601509387 26.063624667579568 21.407220637488404 21 24.26105222493179 27.851641320506765 27.723467589223194 20.16383886533825 22 23.442616730880005 24.051752386011266 27.414967628889446 25.09066325421928 23 22.466964910888905 27.471673122492835 26.016439074362154 24.044922892256114 24 21.908050179532903 24.628603161572716 32.561094650574816 20.902252008319564 25 22.71227480779114 24.79989238373477 29.47002438612164 23.017808422352452 26 20.25903786919795 27.151790672567166 28.656072903121217 23.93309855511367 27 21.83416747436353 25.413581034702798 29.06963669162766 23.682614799306013 28 21.156943836036962 26.321144871498593 31.05246637854021 21.469444913924235 29 22.136941697508615 23.650467889307013 30.25776165066795 23.954828762516428 30 23.780228270654906 25.359152039017797 29.93525777889686 20.925361911430436 31 26.86019198465778 24.23249252377388 26.685936416723294 22.221379074845043 32 29.057633338967094 23.46000089680221 26.645235393333998 20.8371303708967 33 27.18690392833861 24.17482124317482 27.352605382882807 21.285669445603773 34 23.253460449297908 24.073275639057805 30.94567793073238 21.727585980911908 35 23.741320851686158 25.82369558393896 29.129791424501327 21.30519213987355 36 27.39779041732346 25.29147796453492 26.672070474856767 20.638661143284846 37 23.732145875227218 29.533214449553153 26.504575415892024 20.230064259327605 38 23.549129239546218 27.86805969943329 26.158478747512238 22.424332313508256 39 22.440060844580728 28.717745301273805 25.20269454571794 23.639499308427524 40 24.937379061048087 24.808998375408304 26.953597384096938 23.300025179446674 41 20.923775261366107 24.60383762361211 27.641513664161373 26.830873450860416 42 23.081688333638017 25.251328819428874 26.453388705121085 25.213594141812024 43 22.4966283686133 24.359217574563928 28.95408717607332 24.19006688074945 44 23.982905570176495 25.71318195771923 27.930766869366963 22.373145602737317 45 21.25276370296531 26.949251342616385 27.399928945671032 24.39805600874727 46 23.44861840721029 26.070247206978504 27.227811906084114 23.253322479727096 47 22.303401984692275 24.831487415450525 28.481748350401322 24.383362249455885 48 23.08382686198559 23.848454223421026 29.028383789955125 24.03933512463826 49 24.056857260131277 22.791814265363776 28.283279122789466 24.86804935171548 50 21.472204305340455 25.16247641582649 29.209606821215583 24.155712457617472 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 638.0 1 1066.0 2 1494.0 3 9300.5 4 17107.0 5 11495.0 6 5883.0 7 6116.0 8 6349.0 9 6674.5 10 7000.0 11 7155.0 12 7310.0 13 7318.0 14 7326.0 15 7202.5 16 7079.0 17 7116.0 18 7153.0 19 6800.5 20 6448.0 21 6373.0 22 6298.0 23 6884.5 24 7471.0 25 8254.0 26 9037.0 27 10333.0 28 11629.0 29 14014.5 30 16400.0 31 19354.5 32 22309.0 33 25521.0 34 28733.0 35 32860.5 36 36988.0 37 41595.0 38 46202.0 39 56711.5 40 67221.0 41 79463.5 42 91706.0 43 105464.5 44 119223.0 45 129642.0 46 140061.0 47 134159.5 48 128258.0 49 115734.5 50 103211.0 51 94978.0 52 86745.0 53 82198.5 54 77652.0 55 74977.0 56 72302.0 57 69433.5 58 66565.0 59 63052.0 60 59539.0 61 55002.5 62 50466.0 63 44684.5 64 38903.0 65 33439.5 66 27976.0 67 24088.5 68 20201.0 69 17770.5 70 15340.0 71 13125.0 72 10910.0 73 8675.5 74 6441.0 75 5148.0 76 3855.0 77 3110.0 78 2365.0 79 1704.5 80 1044.0 81 727.5 82 411.0 83 324.5 84 238.0 85 157.5 86 77.0 87 47.5 88 18.0 89 13.5 90 9.0 91 6.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1449595.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.24162125265705 #Duplication Level Percentage of deduplicated Percentage of total 1 73.35014588425169 23.649276224271844 2 7.4350578631674145 4.794366392316667 3 3.3729310189017285 3.2624629326830448 4 2.2013009673368327 2.8389404820792694 5 1.6479125573065718 2.6565686265087995 6 1.2658051015343803 2.448696519801155 7 1.0769164030317313 2.4305071551126 8 0.8952831146837579 2.309230327802627 9 0.7855447606196199 2.2794512984016237 >10 7.83440203715352 48.102305078815704 >50 0.10730417412623873 2.2547601825601458 >100 0.0239446407681688 1.4548634583562492 >500 0.002804325158646982 0.6186540213830224 >1k 2.157173198959217E-4 0.09785792108891653 >5k 4.314346397918434E-4 0.8020593788183265 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6020 0.41528840814158435 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5512 0.38024413715555033 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06091356551312608 0.0 2 0.0 0.0 0.0 0.19495100355616568 0.0 3 0.0 0.0 0.0 0.31415671273700585 0.0 4 0.0 0.0 0.0 0.5144195447694011 0.0 5 0.0 0.0 0.0 0.8296800140728963 0.0 6 0.0 0.0 0.0 1.5698867614747567 0.0 7 0.0 0.0 0.0 1.9692396841876525 0.0 8 0.0 0.0 0.0 3.1052811302467243 0.0 9 0.0 0.0 0.0 4.264432479416665 0.0 10 0.0 0.0 0.0 5.754710798533384 0.0 11 0.0 0.0 0.0 6.6646891028183735 0.0 12 0.0 0.0 0.0 7.442216619124652 0.0 13 0.0 0.0 0.0 7.869991273424646 0.0 14 0.0 0.0 0.0 8.088328119233303 0.0 15 0.0 0.0 0.0 8.275966735536477 0.0 16 0.0 0.0 0.0 8.56101186883233 0.0 17 0.0 0.0 0.0 8.860336852707135 0.0 18 0.0 0.0 0.0 9.313152984109355 0.0 19 0.0 0.0 0.0 9.529696225497467 0.0 20 0.0 0.0 0.0 9.783767190146213 0.0 21 0.0 0.0 0.0 10.053704655438244 0.0 22 0.0 0.0 0.0 10.341026286652479 0.0 23 0.0 0.0 0.0 10.642696753231075 0.0 24 0.0 0.0 0.0 10.898699291871178 0.0 25 0.0 0.0 0.0 11.103170195813313 0.0 26 0.0 0.0 0.0 11.311021354240323 0.0 27 0.0 0.0 0.0 11.545017746336045 0.0 28 0.0 0.0 0.0 11.761698957294968 0.0 29 0.0 0.0 0.0 11.99541941024907 0.0 30 0.0 0.0 0.0 12.31123175783581 0.0 31 0.0 0.0 0.0 12.548608404416406 0.0 32 0.0 0.0 0.0 12.790676016404582 0.0 33 0.0 0.0 0.0 13.030467130474374 0.0 34 0.0 0.0 0.0 13.275432103449583 0.0 35 0.0 6.89847854055788E-5 0.0 13.560201297603813 0.0 36 0.0 6.89847854055788E-5 0.0 13.799164594248738 0.0 37 0.0 6.89847854055788E-5 0.0 14.040542358382858 0.0 38 0.0 6.89847854055788E-5 0.0 14.350766938351747 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTACGA 50 2.7284841E-11 44.0 2 TACGAGT 50 2.7284841E-11 44.0 4 TCATACG 30 2.528177E-6 44.0 1 AATCGTA 20 7.857164E-4 44.0 12 CGTTTTT 6380 0.0 41.689655 1 CTATCTC 935 0.0 40.941177 6 ATACGAA 230 0.0 40.173916 19 GTTACGA 55 7.8216544E-11 40.0 2 GCTAACG 55 7.8216544E-11 40.0 1 GAGCGAT 1430 0.0 39.692307 7 AACCGAT 50 1.3478711E-9 39.600002 8 AATACGG 50 1.3478711E-9 39.600002 2 GTTTTTA 3355 0.0 39.34426 2 TACGAAA 235 0.0 39.319153 20 TATCTCT 965 0.0 39.212437 7 AGCGATA 275 0.0 39.2 8 ATTAACG 45 2.3515895E-8 39.11111 1 GCTATCT 590 0.0 38.77966 5 TAGCATA 685 0.0 38.218975 30 ATGTCTC 1255 0.0 38.215137 8 >>END_MODULE