##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546735_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3104982 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.488805088081026 31.0 31.0 33.0 30.0 34.0 2 31.867177651915533 31.0 31.0 34.0 30.0 34.0 3 31.99065340797467 33.0 31.0 34.0 30.0 34.0 4 35.68641814992808 37.0 35.0 37.0 33.0 37.0 5 35.62862200167344 37.0 35.0 37.0 33.0 37.0 6 35.65966501577143 37.0 35.0 37.0 33.0 37.0 7 36.01287543695906 37.0 35.0 37.0 35.0 37.0 8 18.694422383124927 32.0 0.0 37.0 0.0 37.0 9 28.041101365482955 31.0 17.0 39.0 17.0 39.0 10 33.59338411623642 32.0 32.0 39.0 27.0 39.0 11 35.74649031781827 37.0 35.0 39.0 32.0 39.0 12 36.490619913416566 37.0 35.0 39.0 32.0 39.0 13 36.71668370380247 39.0 35.0 39.0 33.0 39.0 14 37.84111019001077 40.0 36.0 41.0 33.0 41.0 15 38.040875277215775 40.0 37.0 41.0 33.0 41.0 16 38.11011625832291 40.0 37.0 41.0 33.0 41.0 17 38.04989851793022 40.0 37.0 41.0 33.0 41.0 18 38.03243497063751 40.0 36.0 41.0 33.0 41.0 19 38.040397657699785 40.0 37.0 41.0 33.0 41.0 20 37.976831105623155 40.0 36.0 41.0 33.0 41.0 21 37.8282659931684 40.0 36.0 41.0 33.0 41.0 22 37.80849550818652 40.0 36.0 41.0 33.0 41.0 23 37.675195862649126 39.0 36.0 41.0 33.0 41.0 24 37.56799041025037 39.0 35.0 41.0 33.0 41.0 25 37.41349482863347 39.0 35.0 41.0 32.0 41.0 26 37.40100425702951 39.0 35.0 41.0 33.0 41.0 27 37.270849235196856 39.0 35.0 41.0 32.0 41.0 28 37.26400958202012 39.0 35.0 41.0 32.0 41.0 29 37.16250110306598 39.0 35.0 41.0 32.0 41.0 30 37.0714397056086 39.0 35.0 41.0 32.0 41.0 31 37.10494070497027 39.0 35.0 41.0 32.0 41.0 32 36.963479015337285 39.0 35.0 41.0 31.0 41.0 33 36.904585598241795 39.0 35.0 41.0 31.0 41.0 34 36.78002932062086 39.0 35.0 41.0 31.0 41.0 35 36.630662271150044 39.0 35.0 41.0 31.0 41.0 36 36.50442901118267 39.0 35.0 41.0 30.0 41.0 37 36.44770340053501 39.0 35.0 41.0 30.0 41.0 38 36.34560876681411 39.0 35.0 41.0 30.0 41.0 39 36.259477832721736 39.0 35.0 41.0 30.0 41.0 40 36.141688744089336 39.0 35.0 40.0 30.0 41.0 41 36.08959472228825 39.0 35.0 40.0 30.0 41.0 42 35.92764563530481 38.0 35.0 40.0 29.0 41.0 43 35.91174473797272 38.0 35.0 40.0 29.0 41.0 44 35.64953774289191 38.0 35.0 40.0 28.0 41.0 45 35.53639248150231 38.0 35.0 40.0 28.0 41.0 46 35.510753363465554 38.0 35.0 40.0 28.0 41.0 47 35.372942258602464 38.0 34.0 40.0 28.0 41.0 48 35.33798875484624 38.0 34.0 40.0 28.0 41.0 49 35.296722493077255 38.0 34.0 40.0 28.0 41.0 50 34.67958397182335 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 2.0 13 10.0 14 25.0 15 68.0 16 159.0 17 364.0 18 845.0 19 1794.0 20 3185.0 21 5376.0 22 8708.0 23 13017.0 24 18475.0 25 26115.0 26 34554.0 27 41035.0 28 46918.0 29 55413.0 30 69721.0 31 89515.0 32 117611.0 33 157125.0 34 234630.0 35 341475.0 36 349047.0 37 503438.0 38 532967.0 39 453384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.020416865540604 25.0893886019307 28.05562157848258 13.83457295404611 2 31.308233026793715 26.106979042068524 28.90332375517797 13.681464175959796 3 29.25466234586867 25.84607575824916 31.020212033435296 13.879049862446868 4 25.7748998222856 28.598587689075174 29.73440747804657 15.892105010592655 5 23.359426882345854 31.859218507546906 29.035949322733597 15.745405287373645 6 21.866535780239627 40.02110157160331 26.692972777297904 11.419389870859154 7 85.66452237082211 4.326723955243541 7.66890114016764 2.339852533766701 8 44.20431422790857 49.99304343793297 3.7203758347069322 2.0822664994515265 9 79.3845503774257 5.357164711421838 10.534972505476683 4.723312405675782 10 42.9425999893075 25.042625045813473 16.279450251241393 15.73532471363763 11 34.2484111019001 24.98658607360687 24.319464653901377 16.44553817059165 12 30.371641445908544 21.616936909779184 27.687471296129896 20.323950348182372 13 23.912505772980328 26.944439613498567 30.133218163583557 19.009836449937552 14 19.903593644021125 29.506644482963186 30.876249846214886 19.7135120268008 15 19.16275199018867 23.303323497527522 38.438097225684395 19.095827286599405 16 21.960674812285546 20.781795192371487 36.39135428160292 20.86617571374005 17 21.679288317935498 22.65768368383456 29.400299260994107 26.262728737235836 18 24.53750134461327 22.509566883157454 30.983045956466093 21.96988581576318 19 27.433750018518626 26.025819151286544 25.816864638828825 20.723566191366004 20 29.541684943745246 24.222233816492334 24.88339706961264 21.35268417014978 21 25.37064627105729 27.43478062030633 26.70170068618755 20.492872422448826 22 24.354279670542372 24.18919014667396 26.502375859183726 24.954154323599944 23 23.278170372646283 27.93017801713504 25.42552581625272 23.366125793965956 24 23.22416039770923 24.205422124830353 30.935348417478746 21.635069059981667 25 22.695719331062143 25.248036864625945 28.605415425918736 23.450828378393176 26 21.09139441066003 27.84161067600392 27.876586724174246 23.190408189161804 27 22.091303588877487 26.01068218752959 28.018519914125108 23.879494309467816 28 21.183826508495056 26.59219924624362 30.523655209595418 21.700319035665906 29 22.28334979075563 24.226130779502103 29.92993196095823 23.56058746878404 30 23.768157110089525 24.33801548608011 29.92993196095823 21.963895442872133 31 25.953032900029694 24.52410352137307 26.202084263290416 23.32077931530682 32 27.14176764953871 24.076693520284497 26.497931388974234 22.28360744120256 33 25.33177325987719 23.88352009770105 27.367276203211482 23.41743043921028 34 21.379254372489115 24.641946394536266 29.654890108863757 24.323909124110866 35 21.69220304658771 24.277660868887484 30.904462570153385 23.12567351437142 36 25.59390038331945 24.898083145087476 26.1760615681508 23.331954903442277 37 22.90306352822657 26.018604938772594 28.398715354871623 22.679616178129216 38 23.95418073277075 26.64682114099212 25.781663146517435 23.61733497971969 39 23.031148006655112 25.325879505903735 26.05264700407281 25.590325483368343 40 25.41625040016335 23.065286690872927 27.773655370626948 23.744807538336776 41 21.017094463027483 23.06812084578912 28.1417412403679 27.773043450815493 42 23.9898009070584 24.817567380422815 26.270361631726047 24.92227008079274 43 22.922580549581287 23.50879972895173 28.3434493340058 25.225170387461183 44 23.288186533770567 25.59229006802616 27.292460954685083 23.82706244351819 45 21.82392683757909 25.760729047704622 27.222315620509235 25.193028494207052 46 23.331568427771884 25.68311185056789 27.25152673992957 23.73379298173065 47 23.23404773361005 24.32403794933433 28.306057812895535 24.13585650416009 48 23.4297654543569 22.71942317217942 29.05053877929083 24.80027259417285 49 23.39449954943378 22.717973888415457 28.37646079751831 25.511065764632452 50 21.728370728075074 24.822398326302697 28.984709090101006 24.464521855521223 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1404.0 1 2404.0 2 3404.0 3 16244.0 4 29084.0 5 19916.0 6 10748.0 7 10912.5 8 11077.0 9 11815.5 10 12554.0 11 12680.0 12 12806.0 13 12701.0 14 12596.0 15 12504.0 16 12412.0 17 12470.0 18 12528.0 19 12000.5 20 11473.0 21 12177.0 22 12881.0 23 14352.5 24 15824.0 25 18015.0 26 20206.0 27 23981.0 28 27756.0 29 33053.5 30 38351.0 31 43590.0 32 48829.0 33 55208.5 34 61588.0 35 69973.0 36 78358.0 37 86221.5 38 94085.0 39 111992.5 40 129900.0 41 153153.0 42 176406.0 43 193309.5 44 210213.0 45 233284.5 46 256356.0 47 270837.0 48 285318.0 49 276489.0 50 267660.0 51 243266.0 52 218872.0 53 201547.0 54 184222.0 55 172354.0 56 160486.0 57 156287.0 58 152088.0 59 145286.5 60 138485.0 61 128505.0 62 118525.0 63 104778.5 64 91032.0 65 77338.5 66 63645.0 67 53512.5 68 43380.0 69 36839.5 70 30299.0 71 25785.0 72 21271.0 73 17111.0 74 12951.0 75 10419.0 76 7887.0 77 6190.5 78 4494.0 79 3316.5 80 2139.0 81 1433.5 82 728.0 83 556.0 84 384.0 85 304.0 86 224.0 87 129.0 88 34.0 89 20.5 90 7.0 91 8.5 92 10.0 93 6.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3104982.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.766367288016767 #Duplication Level Percentage of deduplicated Percentage of total 1 79.49973595355058 25.2541781160084 2 7.218815769436084 4.586311062328679 3 2.553342101027783 2.433312089796149 4 1.5060953702405269 1.913727148073687 5 0.966160760542481 1.5345708789331038 6 0.7351249335912122 1.401134918582243 7 0.5969797841869864 1.3274715361603358 8 0.49882627576363203 1.2676718951056856 9 0.40814193035251034 1.1668667818696203 >10 5.1948957182801445 38.50232113635981 >50 0.7570160221006393 15.397087005874557 >100 0.06011040744109433 2.9150506552210462 >500 0.0025095693400252633 0.5515358440902088 >1k 0.001981238952651524 0.9831142155099037 >5k 2.6416519368686984E-4 0.7656467160865829 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9529 0.3068938885958115 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8719 0.2808067808444622 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3816 0.1228992631841344 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04734326962281907 0.0 2 0.0 0.0 0.0 0.18199783444799358 0.0 3 0.0 0.0 0.0 0.304188558903079 0.0 4 0.0 0.0 0.0 0.49346501847675767 0.0 5 0.0 0.0 0.0 0.8086681339859619 0.0 6 0.0 0.0 0.0 1.497593222762644 0.0 7 0.0 0.0 0.0 1.8387868271056 0.0 8 0.0 0.0 0.0 2.7792753710005402 0.0 9 0.0 0.0 0.0 3.6875898153354836 0.0 10 0.0 0.0 0.0 4.919481014704755 0.0 11 0.0 0.0 0.0 5.728922100031498 0.0 12 0.0 0.0 0.0 6.431695900330501 0.0 13 0.0 0.0 0.0 6.803066813269771 0.0 14 0.0 0.0 0.0 6.979653988332299 0.0 15 0.0 0.0 0.0 7.149026950880875 0.0 16 0.0 0.0 0.0 7.421395679588481 0.0 17 0.0 0.0 0.0 7.707967389182932 0.0 18 0.0 0.0 0.0 8.13618243197545 0.0 19 0.0 0.0 0.0 8.330450868958339 0.0 20 0.0 0.0 0.0 8.564719537826628 0.0 21 0.0 0.0 0.0 8.800115427400224 0.0 22 0.0 0.0 0.0 9.042210228593918 0.0 23 0.0 0.0 0.0 9.313226292455157 0.0 24 0.0 0.0 0.0 9.531552839919845 0.0 25 0.0 0.0 0.0 9.721731076057768 0.0 26 3.2206305865863314E-5 0.0 0.0 9.898318251120296 0.0 27 3.2206305865863314E-5 0.0 0.0 10.089784739492854 0.0 28 3.2206305865863314E-5 0.0 0.0 10.274198046880787 0.0 29 3.2206305865863314E-5 0.0 0.0 10.474392444142994 0.0 30 3.2206305865863314E-5 0.0 0.0 10.727888277613204 0.0 31 3.2206305865863314E-5 0.0 0.0 10.950079581781795 0.0 32 3.2206305865863314E-5 0.0 0.0 11.186699310978293 0.0 33 3.2206305865863314E-5 0.0 0.0 11.386636057793572 0.0 34 3.2206305865863314E-5 0.0 0.0 11.589278134301583 0.0 35 3.2206305865863314E-5 0.0 0.0 11.808892934000905 0.0 36 3.2206305865863314E-5 0.0 0.0 12.01205031140277 0.0 37 6.441261173172663E-5 0.0 0.0 12.23060230300852 0.0 38 6.441261173172663E-5 0.0 0.0 12.473083579872604 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATTA 105 0.0 41.904762 25 CGTTTTT 10280 0.0 41.346306 1 TATGCGA 300 0.0 40.333332 2 TATAGCG 125 0.0 38.72 1 AGCGATA 720 0.0 38.194447 8 GAGCGAT 3135 0.0 38.035088 7 ATGTCTC 2435 0.0 37.675564 8 GTTTTTA 6115 0.0 37.380215 2 CGTTCAT 125 0.0 36.96 17 CTATCTC 2070 0.0 36.666668 6 CGACGGT 120 0.0 36.666664 28 CGGACTA 30 1.3016058E-4 36.666664 14 CGAATAT 340 0.0 36.235294 14 TATCTCT 2155 0.0 35.628773 7 TACGTTA 25 0.0023533592 35.2 1 GCGATAT 420 0.0 35.095238 9 AGACCGA 1225 0.0 35.02041 8 GACCGAT 2400 0.0 34.833332 9 GTTGATC 1530 0.0 34.797386 16 GTTACGA 95 0.0 34.736843 2 >>END_MODULE