##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546733_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1899281 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.44694860844709 31.0 31.0 33.0 30.0 34.0 2 31.818830388973513 31.0 31.0 34.0 30.0 34.0 3 31.94696677321576 31.0 31.0 34.0 30.0 34.0 4 35.63588431622282 37.0 35.0 37.0 33.0 37.0 5 35.58369509303784 37.0 35.0 37.0 33.0 37.0 6 35.61401446126192 37.0 35.0 37.0 33.0 37.0 7 35.98336896962587 37.0 35.0 37.0 35.0 37.0 8 18.581810169216666 31.0 0.0 37.0 0.0 37.0 9 27.957790342766554 30.0 17.0 39.0 17.0 39.0 10 33.520872898744315 32.0 32.0 39.0 27.0 39.0 11 35.69012115637444 37.0 34.0 39.0 32.0 39.0 12 36.37286583712468 37.0 35.0 39.0 32.0 39.0 13 36.57548303805493 39.0 35.0 39.0 33.0 39.0 14 37.67652811774561 39.0 36.0 41.0 33.0 41.0 15 37.90697900942514 40.0 36.0 41.0 33.0 41.0 16 37.97794849735242 40.0 36.0 41.0 33.0 41.0 17 37.93145353425849 40.0 36.0 41.0 33.0 41.0 18 37.905087767423566 40.0 36.0 41.0 33.0 41.0 19 37.919832294431416 40.0 36.0 41.0 33.0 41.0 20 37.84594749276174 40.0 36.0 41.0 33.0 41.0 21 37.700279210922446 40.0 36.0 41.0 33.0 41.0 22 37.68803826290054 40.0 36.0 41.0 33.0 41.0 23 37.55558129629054 39.0 35.0 41.0 33.0 41.0 24 37.44435025675506 39.0 35.0 41.0 32.0 41.0 25 37.29347000259572 39.0 35.0 41.0 32.0 41.0 26 37.264562747692416 39.0 35.0 41.0 32.0 41.0 27 37.13158611074401 39.0 35.0 41.0 32.0 41.0 28 37.14666023616305 39.0 35.0 41.0 32.0 41.0 29 37.032994591111056 39.0 35.0 41.0 32.0 41.0 30 36.92264651728733 39.0 35.0 40.0 31.0 41.0 31 36.928230735736314 39.0 35.0 41.0 31.0 41.0 32 36.78381661270765 39.0 35.0 41.0 31.0 41.0 33 36.70646734211525 39.0 35.0 41.0 31.0 41.0 34 36.611419795175124 39.0 35.0 41.0 31.0 41.0 35 36.457506814420825 39.0 35.0 41.0 30.0 41.0 36 36.32270264378994 39.0 35.0 41.0 30.0 41.0 37 36.2364921251779 39.0 35.0 41.0 30.0 41.0 38 36.12362151782701 39.0 35.0 40.0 30.0 41.0 39 36.023458877333056 38.0 35.0 40.0 29.0 41.0 40 35.917331348020646 38.0 35.0 40.0 29.0 41.0 41 35.86573287470364 38.0 35.0 40.0 29.0 41.0 42 35.70459874026013 38.0 35.0 40.0 28.0 41.0 43 35.666057839782525 38.0 35.0 40.0 28.0 41.0 44 35.39804010043801 38.0 34.0 40.0 27.0 41.0 45 35.27643724125077 38.0 34.0 40.0 27.0 41.0 46 35.2673127357142 38.0 34.0 40.0 27.0 41.0 47 35.10144312505627 37.0 34.0 40.0 27.0 41.0 48 35.061650171828184 37.0 34.0 40.0 27.0 41.0 49 35.03126025058957 37.0 34.0 40.0 27.0 41.0 50 34.37850639268228 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 3.0 13 9.0 14 22.0 15 31.0 16 103.0 17 235.0 18 573.0 19 1138.0 20 2250.0 21 3752.0 22 5859.0 23 8682.0 24 12101.0 25 16879.0 26 21819.0 27 26504.0 28 30810.0 29 36887.0 30 45971.0 31 58538.0 32 75637.0 33 99592.0 34 148748.0 35 217520.0 36 211540.0 37 305613.0 38 314934.0 39 253527.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.32814838878502 25.4710071864037 27.28711549265222 12.913728932159064 2 31.42936721843687 26.220817246105238 28.14891530005302 14.200900235404873 3 29.491633939369688 26.104773332645355 30.171417499569575 14.232175228415384 4 25.292781847446484 28.886826119989617 29.98313572346588 15.837256309098022 5 23.836230657812088 31.38745662174265 29.227902558915712 15.548410161529546 6 21.765868241718838 40.16172435779645 26.581058832263366 11.491348568221342 7 85.83790392258965 4.4132490137057125 7.384426001207825 2.364421062496808 8 43.96953373408148 50.27539368845368 3.5781435185209562 2.1769290589438843 9 79.03738309391817 5.639923739562498 10.730534344312401 4.59215882220693 10 45.46257241556147 23.874508300772764 15.86531956040207 14.7975997232637 11 37.07013338205352 23.78810718371847 23.069098253496982 16.072661180731025 12 31.88553984376193 21.879700792036566 26.645767529923166 19.588991834278342 13 23.94511396681165 28.576656113550335 29.269023383059167 18.209206536578844 14 20.020260298502432 30.52381401172338 29.914478163052227 19.541447526721957 15 18.52674775349198 23.082103174833 39.66327257525348 18.72787649642154 16 21.5161421611652 21.139157396930734 36.97199097974444 20.372709462159627 17 21.71779741912861 22.60365896357622 28.463508032776613 27.21503558451856 18 24.25617904880847 22.276482521543677 31.643079670675377 21.824258758972476 19 27.64361882207004 25.6633957797714 25.63254199878796 21.060443399370605 20 29.124916218295237 24.69513463252673 24.514697930427356 21.665251218750676 21 25.586629887836505 27.86338619719778 26.55378535351009 19.996198561455625 22 24.423505526565055 23.78384241194431 26.29431874483028 25.49833331666036 23 22.890714960029612 27.832637719221115 25.25276670487411 24.023880615875164 24 22.88150094693729 24.35126766392124 31.798559560170403 20.96867182897107 25 22.796837329494686 24.51274982480212 29.282765425442577 23.407647420260613 26 20.851890794463802 28.027342978737746 27.244099214386917 23.87666701241154 27 21.848636405039592 26.976840183206168 27.24678444105954 23.9277389706947 28 20.869634351104445 26.80861862989205 30.77390865280072 21.54783836620279 29 22.13895679470284 24.89600011793937 29.304773753857383 23.660269333500413 30 25.060325460003025 26.141418779001107 27.025542823837018 21.77271293715885 31 27.43359197506846 25.808398020092866 23.977757898910166 22.780252105928504 32 28.98022988699408 25.093548558638766 23.87608784587431 22.050133708492844 33 27.022804945661015 26.8855424763371 23.430182263709266 22.66147031429262 34 22.077881050776583 26.853003847245354 26.45064105837946 24.618474043598603 35 21.675676216420843 28.537746652549046 27.013380326555154 22.773196804474956 36 25.99020366128024 28.19093119975401 23.463510665351784 22.35535447361396 37 22.49609194216127 32.07561177098071 24.560873298895743 20.867422987962286 38 22.66873622175971 31.941139831336173 22.508043833429596 22.88208011347452 39 22.385471133550013 30.17362886271173 23.855079896023813 23.585820107714444 40 24.406657045481946 25.753271896049085 25.97809381550176 23.861977242967207 41 20.26377350165668 25.883531715422837 26.673514872206905 27.17917991071358 42 24.024986297446244 26.57237133420489 24.62189639131861 24.780745977030254 43 22.851542241511392 24.991825854099524 27.352034796325558 24.804597108063525 44 23.219155038143384 25.908804437047493 27.165069307806483 23.706971217002646 45 21.578586844179455 27.71812069935939 26.340967976829127 24.36232447963203 46 24.26539306190079 26.66956600945305 26.022952896385526 23.04208803226063 47 23.024555081633522 25.954347987475263 27.264001482666334 23.75709544822488 48 22.95779297534172 24.06121053177492 28.98696927942732 23.99402721345604 49 23.941796922098415 22.983118348469763 28.283439891200935 24.79164483823089 50 21.7098996936209 26.035694560204625 27.982694503867517 24.271711242306957 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1024.0 1 1699.0 2 2374.0 3 8924.0 4 15474.0 5 10660.0 6 5846.0 7 6098.5 8 6351.0 9 6820.5 10 7290.0 11 7554.5 12 7819.0 13 7774.0 14 7729.0 15 7376.5 16 7024.0 17 7232.0 18 7440.0 19 7361.5 20 7283.0 21 7504.5 22 7726.0 23 8619.0 24 9512.0 25 10922.0 26 12332.0 27 14859.5 28 17387.0 29 19351.0 30 21315.0 31 25061.0 32 28807.0 33 32188.5 34 35570.0 35 40779.0 36 45988.0 37 52345.0 38 58702.0 39 71829.0 40 84956.0 41 102983.5 42 121011.0 43 140258.0 44 159505.0 45 170246.0 46 180987.0 47 173186.5 48 165386.0 49 152355.0 50 139324.0 51 128131.5 52 116939.0 53 110331.5 54 103724.0 55 99842.5 56 95961.0 57 93272.5 58 90584.0 59 85807.0 60 81030.0 61 76510.0 62 71990.0 63 63938.0 64 55886.0 65 47316.5 66 38747.0 67 33399.5 68 28052.0 69 23898.0 70 19744.0 71 16538.0 72 13332.0 73 10783.0 74 8234.0 75 6655.0 76 5076.0 77 3970.0 78 2864.0 79 2210.5 80 1557.0 81 1192.0 82 827.0 83 601.0 84 375.0 85 241.5 86 108.0 87 81.0 88 54.0 89 42.5 90 31.0 91 17.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1899281.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.644873452501162 #Duplication Level Percentage of deduplicated Percentage of total 1 75.91190091577393 20.98574894355377 2 6.987409340557342 3.8633209396106456 3 2.6619873282372 2.2077090846383722 4 1.676750826104953 1.854142575961928 5 1.1816802846787895 1.633370096563034 6 0.9645531862947917 1.5998970463995774 7 0.7635152351877947 1.4775097439076275 8 0.6619773094246069 1.4640223157976366 9 0.6004087569129355 1.4938401694168466 >10 8.018206880942472 50.92252398065309 >50 0.5167784351567279 8.809295828772118 >100 0.05035945569230231 2.1697549189294354 >500 0.0031109878512093295 0.6314222878414316 >1k 0.0013610571849040818 0.8874420679545447 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4894 0.25767645756473107 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4530 0.23851131033269957 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2804 0.14763481549070412 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06223407700071764 0.0 2 5.26515033847019E-5 0.0 0.0 0.20381396960218104 0.0 3 5.26515033847019E-5 0.0 0.0 0.31564576279128786 0.0 4 5.26515033847019E-5 0.0 0.0 0.5313589721584115 0.0 5 5.26515033847019E-5 0.0 0.0 0.871277078010047 0.0 6 5.26515033847019E-5 0.0 0.0 1.535212535691138 0.0 7 5.26515033847019E-5 0.0 0.0 1.8627575382473684 0.0 8 5.26515033847019E-5 0.0 0.0 2.8606614818976235 0.0 9 5.26515033847019E-5 0.0 0.0 3.739362421884913 0.0 10 5.26515033847019E-5 0.0 0.0 4.95150533280752 0.0 11 5.26515033847019E-5 0.0 0.0 5.757389243613767 0.0 12 5.26515033847019E-5 0.0 0.0 6.469448175388476 0.0 13 5.26515033847019E-5 0.0 0.0 6.817316658251201 0.0 14 5.26515033847019E-5 0.0 0.0 6.979746546193007 0.0 15 5.26515033847019E-5 0.0 0.0 7.153496507362523 0.0 16 5.26515033847019E-5 0.0 0.0 7.452872955607938 0.0 17 5.26515033847019E-5 0.0 0.0 7.768466066895841 0.0 18 5.26515033847019E-5 0.0 0.0 8.2156879366455 0.0 19 5.26515033847019E-5 0.0 0.0 8.424925011096304 0.0 20 5.26515033847019E-5 0.0 0.0 8.672702986024712 0.0 21 5.26515033847019E-5 0.0 0.0 8.923271490632509 0.0 22 5.26515033847019E-5 0.0 0.0 9.178683933551696 0.0 23 5.26515033847019E-5 0.0 0.0 9.457526295477077 0.0 24 5.26515033847019E-5 0.0 0.0 9.691193667498386 0.0 25 5.26515033847019E-5 0.0 0.0 9.882476579295007 0.0 26 5.26515033847019E-5 0.0 0.0 10.068020477222696 0.0 27 5.26515033847019E-5 0.0 0.0 10.266832554003331 0.0 28 5.26515033847019E-5 0.0 0.0 10.45753629926272 0.0 29 5.26515033847019E-5 0.0 0.0 10.654242315907966 0.0 30 5.26515033847019E-5 0.0 0.0 10.907917259215461 0.0 31 5.26515033847019E-5 0.0 0.0 11.118891833277962 0.0 32 5.26515033847019E-5 0.0 0.0 11.338606556902322 0.0 33 5.26515033847019E-5 0.0 0.0 11.546737949782049 0.0 34 5.26515033847019E-5 0.0 0.0 11.761450780584864 0.0 35 5.26515033847019E-5 0.0 0.0 11.986641260561234 0.0 36 5.26515033847019E-5 0.0 0.0 12.193140456836034 0.0 37 5.26515033847019E-5 0.0 0.0 12.408274499665927 0.0 38 5.26515033847019E-5 0.0 0.0 12.639046039001075 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGACA 20 7.85778E-4 44.000004 22 TCTAGCG 65 0.0 44.000004 1 GAGCGAT 2050 0.0 40.887806 7 CGTTTTT 5695 0.0 40.755047 1 AGCGATA 380 0.0 40.526318 8 CTATCTC 1055 0.0 40.037914 6 AGACCGA 470 0.0 38.851063 8 TCACGAC 125 0.0 38.72 25 GTTTTTA 3410 0.0 37.741936 2 GCGATAA 175 0.0 37.714287 9 GATCGAC 35 7.2927196E-6 37.714283 9 TATCTCT 1170 0.0 36.8547 7 TATAGCG 90 0.0 36.666668 1 GACGATA 90 0.0 36.666668 7 TTATACG 30 1.3014152E-4 36.666664 1 TGATTCG 240 0.0 36.666664 15 TAACGAG 235 0.0 36.510635 3 ATTAGCG 85 0.0 36.23529 1 GAGACCG 630 0.0 35.968254 7 GTAGCAT 1055 0.0 35.658768 29 >>END_MODULE