##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546729_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1294517 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46216388042799 31.0 31.0 33.0 30.0 34.0 2 31.846352732331827 31.0 31.0 34.0 30.0 34.0 3 31.95578350844369 31.0 31.0 34.0 30.0 34.0 4 35.660696615030936 37.0 35.0 37.0 33.0 37.0 5 35.60563206199687 37.0 35.0 37.0 33.0 37.0 6 35.633954594648046 37.0 35.0 37.0 33.0 37.0 7 35.99441027039428 37.0 35.0 37.0 35.0 37.0 8 18.97892495811179 33.0 0.0 37.0 0.0 37.0 9 28.18032517147322 32.0 17.0 39.0 17.0 39.0 10 33.63858952798611 33.0 32.0 39.0 27.0 39.0 11 35.744439045605425 37.0 35.0 39.0 32.0 39.0 12 36.46028132500384 37.0 35.0 39.0 32.0 39.0 13 36.70046279809381 39.0 35.0 39.0 33.0 39.0 14 37.79761640828201 39.0 36.0 41.0 33.0 41.0 15 37.99442185772763 40.0 37.0 41.0 33.0 41.0 16 38.06187867752992 40.0 37.0 41.0 33.0 41.0 17 38.01627634090553 40.0 37.0 41.0 33.0 41.0 18 37.97692884682086 40.0 36.0 41.0 33.0 41.0 19 37.97342560970617 40.0 37.0 41.0 33.0 41.0 20 37.879825448410486 40.0 36.0 41.0 33.0 41.0 21 37.729792656257125 40.0 36.0 41.0 33.0 41.0 22 37.72547830580827 40.0 36.0 41.0 33.0 41.0 23 37.54826626456045 39.0 36.0 41.0 32.0 41.0 24 37.401425396499235 39.0 35.0 41.0 32.0 41.0 25 37.22940061814561 39.0 35.0 41.0 32.0 41.0 26 37.21122009212702 39.0 35.0 41.0 32.0 41.0 27 37.07454981278732 39.0 35.0 41.0 32.0 41.0 28 37.052735499031684 39.0 35.0 41.0 32.0 41.0 29 36.938860594337505 39.0 35.0 40.0 31.0 41.0 30 36.80621807206858 39.0 35.0 40.0 31.0 41.0 31 36.795974096902555 39.0 35.0 41.0 31.0 41.0 32 36.611329940047135 39.0 35.0 41.0 30.0 41.0 33 36.450992918594345 39.0 35.0 41.0 30.0 41.0 34 36.2785208691736 39.0 35.0 41.0 30.0 41.0 35 36.07952155128129 39.0 35.0 41.0 29.0 41.0 36 35.929983152017314 39.0 35.0 40.0 29.0 41.0 37 35.88206489370167 39.0 35.0 40.0 29.0 41.0 38 35.77465185856964 38.0 35.0 40.0 28.0 41.0 39 35.68165423860791 38.0 35.0 40.0 27.0 41.0 40 35.584419517086296 38.0 35.0 40.0 27.0 41.0 41 35.53550552059185 38.0 35.0 40.0 27.0 41.0 42 35.354229415295436 38.0 35.0 40.0 26.0 41.0 43 35.33157849607228 38.0 34.0 40.0 27.0 41.0 44 35.050530043251655 38.0 34.0 40.0 26.0 41.0 45 34.936020925179044 37.0 34.0 40.0 25.0 41.0 46 34.91588909222513 37.0 34.0 40.0 26.0 41.0 47 34.761638510734116 37.0 34.0 40.0 25.0 41.0 48 34.71631118015445 37.0 34.0 40.0 25.0 41.0 49 34.66144283929837 37.0 34.0 40.0 25.0 41.0 50 34.047819379737774 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 2.0 13 8.0 14 8.0 15 25.0 16 60.0 17 177.0 18 395.0 19 849.0 20 1558.0 21 2666.0 22 4235.0 23 6200.0 24 9254.0 25 13449.0 26 18016.0 27 21437.0 28 23406.0 29 26760.0 30 32241.0 31 40280.0 32 51612.0 33 67695.0 34 99278.0 35 138345.0 36 146951.0 37 206716.0 38 208461.0 39 174429.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.58504909553138 24.644713047414594 27.495660543662233 15.274577313391791 2 33.24444561176099 25.35895627481138 27.58349253041868 13.813105583008953 3 29.26157014546738 25.285260834736047 31.578032578946434 13.875136440850138 4 25.53886893721751 27.877579050719305 30.899632836030737 15.683919176032452 5 23.614753610806194 30.81519980038887 30.36514777326215 15.204898815542785 6 21.888704435708455 39.548804689316555 27.3181425968141 11.24434827816089 7 84.4810844508029 4.177465417603631 9.088177289290137 2.2532728423033457 8 44.48408170769484 49.05335349014342 4.553281262432243 1.9092835397294898 9 78.31283791560868 5.455625534465751 11.606722816309095 4.6248137336164765 10 42.30883024324903 25.290900003630696 17.354349151073333 15.045920602046941 11 33.816705381234854 24.34390587377377 25.072826390074443 16.766562354916932 12 28.86667382506371 21.562096133152366 29.688679252570648 19.882550789213273 13 24.556031322879498 25.367221905930936 31.43334540990964 18.64340136127992 14 20.75901668344255 27.539769659262873 32.31939016637093 19.38182349092364 15 19.816734735812663 22.32940934727006 38.427305319281245 19.42655059763603 16 22.982703201271207 21.519300248664173 34.99954036911064 20.498456180953976 17 23.072080165807016 22.282982765000384 29.900032212786698 24.744904856405903 18 25.029180767807606 22.00805396916379 31.729517650212397 21.233247612816207 19 27.889089135175517 24.58291393624031 27.306169019024086 20.22182790956009 20 29.17026195870738 23.967472037833414 26.541250520464388 20.321015482994817 21 25.990465942123585 25.961420359871674 28.265291224448962 19.782822473555775 22 25.260618439155298 22.8087387033156 28.117436850964488 23.81320600656461 23 23.957120686711722 25.886566186461824 27.1554564366478 23.000856690178654 24 23.514716299592823 23.775894793193135 31.23751947637613 21.471869430837913 25 24.00910918898709 24.207716082523444 29.13673594089533 22.646438787594136 26 22.075028755898916 25.98644899989726 28.31828396228091 23.62023828192291 27 22.531569689698937 24.727832851944008 29.418076394516255 23.3225210638408 28 22.277034600549857 25.248335865809413 30.85984965821229 21.614779875428443 29 23.436308677290448 24.17627578471353 29.75928473708727 22.628130800908757 30 25.016975443350688 23.69872315311425 29.60694992804266 21.677351475492404 31 26.764886054026327 23.694551713109988 27.361401974636102 22.179160258227586 32 28.939596776249367 22.99058258794593 26.615718449429398 21.454102186375305 33 27.557459654836514 23.188648739259506 27.270711778987838 21.98317982691614 34 23.65600451751503 24.062488171263876 30.435985004445676 21.845522306775422 35 23.880335291077674 24.72914608305646 29.004717589649264 22.385801036216595 36 26.386907240306616 24.619761656277976 27.619336014899766 21.373995088515642 37 24.411035158286836 25.918856222050383 26.90771924972789 22.762389369934887 38 24.116794140208277 26.19293528010833 26.26755770685128 23.422712872832108 39 23.582231828550725 24.68426447856614 26.063079897753372 25.670423795129764 40 24.69206661635189 22.96354547680718 27.591912659316176 24.752475247524753 41 21.69117902661765 22.86590288115181 27.663213383833508 27.77970470839703 42 24.166928669148415 24.148543433574066 26.723326151761622 24.961201745515897 43 23.14747508143964 23.35056241053613 28.7813910516432 24.72057145638103 44 23.905209433325325 24.42424471830034 28.58293865588478 23.087607192489553 45 22.552581387498194 25.239297745800172 27.840113339569893 24.36800752713174 46 23.756119077617367 24.941039785495285 27.75915650393158 23.543684632955767 47 23.12298718363683 24.745909091962485 28.46389811798532 23.667205606415365 48 23.567091046313028 23.480726788446965 29.07470508305414 23.877477082185866 49 24.057157997925096 22.69850453875847 28.846898109487938 24.397439353828492 50 22.229294787167724 24.768620265319033 28.882046353968317 24.12003859354493 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 485.0 1 966.5 2 1448.0 3 10368.0 4 19288.0 5 12820.5 6 6353.0 7 6325.5 8 6298.0 9 6600.5 10 6903.0 11 6901.0 12 6899.0 13 6882.5 14 6866.0 15 6541.0 16 6216.0 17 6072.5 18 5929.0 19 5885.0 20 5841.0 21 6018.0 22 6195.0 23 6801.0 24 7407.0 25 8456.0 26 9505.0 27 10731.5 28 11958.0 29 13838.0 30 15718.0 31 18001.5 32 20285.0 33 22552.0 34 24819.0 35 28363.5 36 31908.0 37 35235.5 38 38563.0 39 44400.5 40 50238.0 41 57212.0 42 64186.0 43 69268.0 44 74350.0 45 78618.0 46 82886.0 47 90048.0 48 97210.0 49 102695.5 50 108181.0 51 104808.5 52 101436.0 53 92958.5 54 84481.0 55 79757.0 56 75033.0 57 71617.0 58 68201.0 59 64268.5 60 60336.0 61 57108.5 62 53881.0 63 48139.5 64 42398.0 65 36422.5 66 30447.0 67 26229.0 68 22011.0 69 18839.5 70 15668.0 71 13057.5 72 10447.0 73 8458.5 74 6470.0 75 5115.0 76 3760.0 77 2943.5 78 2127.0 79 1618.5 80 1110.0 81 783.5 82 457.0 83 330.0 84 203.0 85 126.0 86 49.0 87 43.0 88 37.0 89 24.5 90 12.0 91 11.0 92 10.0 93 8.0 94 6.0 95 4.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1294517.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.165143052301076 #Duplication Level Percentage of deduplicated Percentage of total 1 70.04858597942766 24.63268546577985 2 7.4097641366911615 5.211308317011098 3 3.940095758204317 4.156620929310584 4 2.8284595298425477 3.9785273593822974 5 2.264823481808263 3.9821420862999086 6 1.9148241040772456 4.0401038123922355 7 1.5746656601263502 3.876134023852245 8 1.4091199355723159 3.9641523289799805 9 1.2197497213159345 3.860340609427129 >10 7.327882417927317 38.94061801711494 >50 0.042767767326420604 0.9851432335520827 >100 0.01793312875465361 1.1865792873904626 >500 8.855859505316931E-4 0.19268961918249666 >1k 0.0 0.0 >5k 4.4279297526584655E-4 0.9929549103246716 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6765 0.5225887338675352 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5989 0.46264359602848015 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04967103560633039 0.0 2 0.0 0.0 0.0 0.15735598682751945 0.0 3 0.0 0.0 0.0 0.25314460914765896 0.0 4 0.0 0.0 0.0 0.3948963204036718 0.0 5 0.0 0.0 0.0 0.641474773989063 0.0 6 0.0 0.0 0.0 1.1853069523227582 0.0 7 0.0 0.0 0.0 1.476226268175698 0.0 8 0.0 0.0 0.0 2.230870664502668 0.0 9 0.0 0.0 0.0 3.033641118656611 0.0 10 0.0 0.0 0.0 4.114816568650701 0.0 11 0.0 0.0 0.0 4.826356084933608 0.0 12 0.0 0.0 0.0 5.413602138867238 0.0 13 0.0 0.0 0.0 5.73070882808028 0.0 14 0.0 0.0 0.0 5.896948437139103 0.0 15 0.0 0.0 0.0 6.046888530625708 0.0 16 0.0 0.0 0.0 6.282343144199729 0.0 17 0.0 0.0 0.0 6.522278193333884 0.0 18 0.0 0.0 0.0 6.882335264813054 0.0 19 0.0 0.0 0.0 7.059930460550151 0.0 20 7.724888896785442E-5 0.0 0.0 7.267729971873679 0.0 21 7.724888896785442E-5 0.0 0.0 7.472285029860558 0.0 22 7.724888896785442E-5 0.0 0.0 7.680084541184087 0.0 23 7.724888896785442E-5 0.0 0.0 7.910054483641389 0.0 24 7.724888896785442E-5 0.0 0.0 8.103562950505864 0.0 25 7.724888896785442E-5 0.0 0.0 8.265090377337648 0.0 26 7.724888896785442E-5 0.0 0.0 8.430789244173695 0.0 27 7.724888896785442E-5 0.0 0.0 8.624761204371978 0.0 28 7.724888896785442E-5 0.0 0.0 8.793318280099836 0.0 29 7.724888896785442E-5 0.0 0.0 8.972303955838354 0.0 30 7.724888896785442E-5 0.0 0.0 9.187982853836605 0.0 31 7.724888896785442E-5 0.0 0.0 9.375156911805716 0.0 32 7.724888896785442E-5 0.0 0.0 9.582801925351308 0.0 33 7.724888896785442E-5 0.0 0.0 9.778396112217916 0.0 34 7.724888896785442E-5 0.0 0.0 9.97375855241762 0.0 35 7.724888896785442E-5 0.0 0.0 10.169352739284227 0.0 36 7.724888896785442E-5 0.0 0.0 10.357299286143016 0.0 37 7.724888896785442E-5 0.0 0.0 10.55915063301602 0.0 38 1.5449777793570885E-4 0.0 0.0 10.797772451037723 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAACG 30 2.527966E-6 44.0 1 TACGTAG 75 0.0 44.0 1 CGTTTTT 6320 0.0 41.35443 1 TATGCGA 95 0.0 39.368423 2 GAGCGAT 1230 0.0 39.349594 7 CACGACG 45 2.3514076E-8 39.111107 26 AGCCGAT 170 0.0 38.823532 8 GTTTTTA 3575 0.0 38.646152 2 GCGATCG 110 0.0 38.0 9 GCCGATA 135 0.0 37.48148 9 TAATCGT 130 0.0 37.23077 21 CTATCTC 615 0.0 37.20325 6 TATTACG 30 1.3011861E-4 36.666664 1 AGCGATA 255 0.0 36.235294 8 AGACCGA 480 0.0 35.75 8 ACATACG 160 0.0 35.75 17 GAGACCG 575 0.0 35.58261 7 TGTATCG 25 0.0023528545 35.2 1 TGTAACG 50 5.94664E-8 35.2 1 TAATCCG 25 0.0023528545 35.2 1 >>END_MODULE