##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546725_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1483424 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.452683791013225 31.0 31.0 33.0 30.0 34.0 2 31.82699821494057 31.0 31.0 34.0 30.0 34.0 3 31.963139331708263 31.0 31.0 34.0 30.0 34.0 4 35.655269161076 37.0 35.0 37.0 33.0 37.0 5 35.59506317816079 37.0 35.0 37.0 33.0 37.0 6 35.6322076493302 37.0 35.0 37.0 33.0 37.0 7 35.973608354725286 37.0 35.0 37.0 35.0 37.0 8 18.66747942597666 32.0 0.0 37.0 0.0 37.0 9 27.986362631317817 31.0 17.0 39.0 17.0 39.0 10 33.566627612874 32.0 32.0 39.0 27.0 39.0 11 35.71005727290377 37.0 35.0 39.0 32.0 39.0 12 36.41216334642017 37.0 35.0 39.0 32.0 39.0 13 36.60814305282913 39.0 35.0 39.0 33.0 39.0 14 37.76642349051923 39.0 36.0 41.0 33.0 41.0 15 37.9726160558276 40.0 36.0 41.0 33.0 41.0 16 38.03882908730073 40.0 36.0 41.0 33.0 41.0 17 37.9940374431046 40.0 36.0 41.0 33.0 41.0 18 37.986683510580924 40.0 36.0 41.0 33.0 41.0 19 37.99532972366633 40.0 36.0 41.0 33.0 41.0 20 37.92385251957633 40.0 36.0 41.0 33.0 41.0 21 37.784898316327634 40.0 36.0 41.0 33.0 41.0 22 37.750199538365294 40.0 36.0 41.0 33.0 41.0 23 37.613170610695256 39.0 36.0 41.0 33.0 41.0 24 37.49419451215566 39.0 35.0 41.0 32.0 41.0 25 37.32755368660612 39.0 35.0 41.0 32.0 41.0 26 37.294060228228744 39.0 35.0 41.0 32.0 41.0 27 37.19223836205967 39.0 35.0 41.0 32.0 41.0 28 37.18675038289794 39.0 35.0 41.0 32.0 41.0 29 37.09903641844813 39.0 35.0 41.0 32.0 41.0 30 37.00203650473499 39.0 35.0 40.0 31.0 41.0 31 37.070370979571585 39.0 35.0 41.0 32.0 41.0 32 36.92198184740169 39.0 35.0 41.0 31.0 41.0 33 36.8493856105874 39.0 35.0 41.0 31.0 41.0 34 36.75115341264534 39.0 35.0 41.0 31.0 41.0 35 36.60917445046056 39.0 35.0 41.0 31.0 41.0 36 36.42240249584744 39.0 35.0 41.0 30.0 41.0 37 36.35682650408784 39.0 35.0 41.0 30.0 41.0 38 36.25302273658779 39.0 35.0 40.0 30.0 41.0 39 36.118990254977675 38.0 35.0 40.0 30.0 41.0 40 36.022541768233495 38.0 35.0 40.0 30.0 41.0 41 35.98037310977846 38.0 35.0 40.0 29.0 41.0 42 35.831704219427486 38.0 35.0 40.0 29.0 41.0 43 35.83224418642276 38.0 35.0 40.0 29.0 41.0 44 35.57942975170956 38.0 35.0 40.0 28.0 41.0 45 35.48288756282762 38.0 34.0 40.0 28.0 41.0 46 35.46692314537179 38.0 34.0 40.0 28.0 41.0 47 35.330498899842524 38.0 34.0 40.0 28.0 41.0 48 35.28041207368898 37.0 34.0 40.0 28.0 41.0 49 35.22087953275665 37.0 34.0 40.0 28.0 41.0 50 34.6025303621891 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 7.0 13 4.0 14 8.0 15 24.0 16 56.0 17 192.0 18 378.0 19 841.0 20 1555.0 21 2538.0 22 4104.0 23 5934.0 24 8372.0 25 11822.0 26 15769.0 27 19563.0 28 23096.0 29 27682.0 30 35058.0 31 45386.0 32 58471.0 33 77948.0 34 116192.0 35 168790.0 36 166441.0 37 238677.0 38 249583.0 39 204927.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.35290517074013 24.759677610716828 28.667663459671676 13.219753758871367 2 30.441532562504044 26.40121772332118 29.9515849817719 13.205664732402871 3 29.85869178333369 25.857475677891152 30.154156869512693 14.129675669262461 4 26.899928813339947 28.161334857734538 29.592011454580753 15.346724874344758 5 23.552740147119096 32.811792178096084 28.755163729318117 14.880303945466705 6 22.56933958194016 40.40341803826822 25.932707034536318 11.094535345255302 7 86.1317465539185 4.758113661367215 6.652177664646117 2.4579621200681667 8 44.53972700994456 50.24982742627866 3.20016394503527 2.010281618741506 9 79.26378432599176 6.444212848113554 9.646196906616044 4.645805919278642 10 44.89377278512415 25.899675345686735 14.317484414435791 14.889067454753327 11 36.73326034903035 23.301564488642494 22.840738723385897 17.12443643894126 12 33.05676596846215 20.72596910930388 26.48339247578575 19.733872446448217 13 23.8389698427422 28.101338524926117 27.731990314299892 20.327701318031796 14 19.397960394330955 30.234983389779323 28.915064067994045 21.45199214789568 15 18.624412170761698 22.56623864788489 38.52856634380999 20.280782837543413 16 20.19705761805121 20.370035809047177 37.085014129473436 22.347892443428176 17 20.78556097245292 22.110738399810167 28.759006191082253 28.34469443665466 18 23.28579017192657 23.077016416075242 30.91112183704726 22.72607157495092 19 28.165109907888773 25.8934734775762 24.19679066807602 21.744625946459003 20 30.19763735789633 22.914554436223224 24.649594451754858 22.238213754125592 21 25.740112065060295 27.408212351964107 24.289953512953815 22.561722070021787 22 24.69469281877602 24.930026748926807 24.428012490023082 25.947267942274088 23 24.596204456716354 27.661612593567313 23.874697995987663 23.86748495372867 24 23.339045343745283 23.487687943568396 31.388463446728647 21.784803265957674 25 22.974550769031644 24.372802381517356 28.410825225963716 24.241821623487283 26 21.32835925534439 28.77073581120435 26.15132288543262 23.749582048018638 27 22.774203464417457 26.545883038160362 26.41355404793235 24.26635944948983 28 21.303147313242874 26.774880276980824 30.329427055245162 21.59254535453114 29 22.882264275082512 24.187353042690425 28.635036240481483 24.295346441745583 30 24.250180663114524 26.44921478956792 26.285674223957546 23.014930323360012 31 27.7736506892163 24.860525379122894 23.54734721832733 23.818476713333478 32 30.201614642880255 24.721050758245788 23.661879543542508 21.41545505533145 33 27.9109681385767 25.740246888280087 23.416366460297258 22.932418512845956 34 24.425450848846992 24.993124015790496 26.768071704381214 23.813353430981294 35 26.338187868067394 23.919728951398923 26.376882132148328 23.365201048385355 36 28.017141424164638 27.345249908320213 23.873484587009514 20.764124080505642 37 26.370343205988306 28.28388916452747 25.02278512414522 20.322982505339 38 25.645398753154865 28.30350594300753 24.228608947947453 21.822486355890156 39 25.531540544038656 27.229571585736785 25.0768492352827 22.162038634941865 40 26.446113855512653 24.23818139655284 26.7986765752745 22.51702817266001 41 21.799970878184524 24.056641931099943 27.57862890178398 26.56475828893155 42 24.415878400241603 25.284139935716286 24.651077507172594 25.648904156869513 43 23.660733546174257 24.463066527169573 27.032797096447137 24.84340283020903 44 23.537033242013074 26.18064693573786 26.886783549410016 23.395536272839053 45 22.040293267467696 27.541754751170267 25.646814396962704 24.771137584399337 46 23.929503634834006 27.665589878551245 25.151204240999203 23.25370224561555 47 24.73149955777984 24.359994175636903 26.843977177125357 24.064529089457903 48 24.077067648898765 22.80130293159609 28.35460394330953 24.767025476195613 49 23.41164764760446 23.60963554587225 28.15135793946977 24.82735886705352 50 21.76006320512544 25.413030933839547 28.290495502297386 24.536410358737623 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 527.0 1 1098.0 2 1669.0 3 6476.5 4 11284.0 5 7932.0 6 4580.0 7 4636.0 8 4692.0 9 4885.5 10 5079.0 11 5169.5 12 5260.0 13 5263.0 14 5266.0 15 5235.5 16 5205.0 17 5228.5 18 5252.0 19 5137.0 20 5022.0 21 5123.5 22 5225.0 23 5892.0 24 6559.0 25 8676.0 26 10793.0 27 12390.5 28 13988.0 29 16576.0 30 19164.0 31 21037.5 32 22911.0 33 25069.0 34 27227.0 35 30372.0 36 33517.0 37 36168.0 38 38819.0 39 49063.0 40 59307.0 41 71194.0 42 83081.0 43 89963.5 44 96846.0 45 101326.5 46 105807.0 47 111200.0 48 116593.0 49 121809.5 50 127026.0 51 121227.0 52 115428.0 53 104228.5 54 93029.0 55 88750.5 56 84472.0 57 84857.5 58 85243.0 59 82369.0 60 79495.0 61 71553.0 62 63611.0 63 54391.0 64 45171.0 65 38389.5 66 31608.0 67 27184.5 68 22761.0 69 19536.5 70 16312.0 71 13728.0 72 11144.0 73 9130.0 74 7116.0 75 5553.0 76 3990.0 77 2925.0 78 1860.0 79 1335.5 80 811.0 81 613.0 82 415.0 83 294.0 84 173.0 85 110.0 86 47.0 87 40.0 88 33.0 89 19.0 90 5.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1483424.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.913481510465658 #Duplication Level Percentage of deduplicated Percentage of total 1 72.65433853020407 20.280355352179637 2 6.730703174487679 3.7575471722698865 3 2.9256612810553033 2.4499617622386745 4 2.001832266211392 2.23512431799781 5 1.5540581382474143 2.168958655407894 6 1.284147287748438 2.1507012943968387 7 1.0808973007522344 2.1120124773481814 8 0.9764943153563315 2.1805884813419025 9 0.8649858030029126 2.1730288697043383 >10 9.71630604439262 54.365893048481375 >50 0.17186599200252753 3.072259345522826 >100 0.03556469068679654 1.9273900952650056 >500 0.0021774294361864258 0.3877740796407875 >1k 9.67746416082856E-4 0.7384050482048712 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3676 0.24780507798175033 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3273 0.22063819919321787 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2150 0.14493496127877126 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 1835 0.12370030416118385 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.048468947516017 0.0 2 0.0 0.0 0.0 0.16084410121448756 0.0 3 0.0 0.0 0.0 0.24611978773432275 0.0 4 0.0 0.0 0.0 0.4062223612399422 0.0 5 0.0 0.0 0.0 0.6632628297775957 0.0 6 0.0 0.0 0.0 1.187590331557262 0.0 7 0.0 0.0 0.0 1.4674159242401363 0.0 8 0.0 0.0 0.0 2.294960847336972 0.0 9 0.0 0.0 0.0 3.113337791487801 0.0 10 0.0 0.0 0.0 4.223404771663395 0.0 11 0.0 0.0 0.0 4.906284379921048 0.0 12 0.0 0.0 0.0 5.520808615743038 0.0 13 0.0 0.0 0.0 5.827531440774856 0.0 14 0.0 0.0 0.0 5.96309618827793 0.0 15 0.0 0.0 0.0 6.0981890545117245 0.0 16 0.0 0.0 0.0 6.329545699678581 0.0 17 0.0 0.0 0.0 6.574047608775373 0.0 18 0.0 0.0 0.0 6.939620769247363 0.0 19 0.0 0.0 0.0 7.098307698945143 0.0 20 0.0 0.0 0.0 7.302092995664085 0.0 21 0.0 0.0 0.0 7.517001208016049 0.0 22 0.0 0.0 0.0 7.746672562935479 0.0 23 0.0 0.0 0.0 7.987264598658239 0.0 24 0.0 0.0 0.0 8.178578747546217 0.0 25 0.0 0.0 0.0 8.342860840865457 0.0 26 6.741160989710292E-5 0.0 0.0 8.497840132018897 0.0 27 6.741160989710292E-5 0.0 0.0 8.658010117134413 0.0 28 6.741160989710292E-5 0.0 0.0 8.820606920206226 0.0 29 6.741160989710292E-5 0.0 0.0 8.97666479711802 0.0 30 6.741160989710292E-5 0.0 0.0 9.192988653277823 0.0 31 6.741160989710292E-5 0.0 0.0 9.377494229566192 0.0 32 6.741160989710292E-5 0.0 0.0 9.561460512975387 0.0 33 6.741160989710292E-5 0.0 0.0 9.738550812175076 0.0 34 6.741160989710292E-5 0.0 0.0 9.917596048061782 0.0 35 6.741160989710292E-5 0.0 0.0 10.113831244472248 0.0 36 6.741160989710292E-5 0.0 0.0 10.302785987013827 0.0 37 1.3482321979420585E-4 0.0 0.0 10.493830489462217 0.0 38 1.3482321979420585E-4 0.0 0.0 10.696334965593115 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGCGAT 1525 0.0 40.68197 7 CTAAACG 45 2.3517714E-8 39.11111 1 CTATTAG 45 2.3517714E-8 39.11111 1 TATAGCG 85 0.0 38.82353 1 AGACCGA 485 0.0 38.5567 8 CTATCTC 805 0.0 38.534164 6 CGTTTTT 4195 0.0 38.231228 1 TCGTAGA 150 0.0 38.13333 2 TCTAGCG 65 1.0913936E-11 37.23077 1 ACGAGTA 65 1.0913936E-11 37.23077 5 TATACTA 855 0.0 36.795322 44 CGTATGG 90 0.0 36.666668 2 TTAACGA 30 1.301278E-4 36.666664 2 ACGGTAC 30 1.301278E-4 36.666664 13 AGGGGAA 6340 0.0 36.50473 8 TAAGTAG 170 0.0 36.23529 1 CGTTAGA 110 0.0 36.0 2 GTTACGA 55 3.426976E-9 36.0 2 TACGAGT 55 3.426976E-9 36.0 4 AGTTACG 55 3.426976E-9 36.0 1 >>END_MODULE