SRR1546720_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546720_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2722486
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16664	0.6120876287334444	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15433	0.5668716019109006	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17215	42.261982	1
GTTTTTA	9145	40.487698	2
AGCGATA	595	39.932774	8
GAGCGAT	2690	39.74721	7
CTATCTC	1470	39.210884	6
CGCATGA	175	37.714287	2
GTTTACG	85	36.23529	1
TATCTCT	1615	35.826622	7
TATTTTT	10770	35.62488	7
TTATTTT	10805	35.61129	6
GACCGAT	1905	35.454067	9
AGACCGA	1075	35.2	8
AGCCGAT	295	35.05085	8
TATACTA	1470	34.57143	44
ATGTCTC	2400	34.558334	8
CTAATCC	1710	34.47953	11
AGCGATG	1210	34.363636	8
TTTATTT	11260	34.30906	5
GTTACGA	200	34.100002	2
GAGACCG	1245	33.92771	7