##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546720_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2722486 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.448751251613416 31.0 31.0 33.0 30.0 34.0 2 31.831619703462202 31.0 31.0 34.0 30.0 34.0 3 31.938100324482843 31.0 31.0 34.0 30.0 34.0 4 35.65373118539453 37.0 35.0 37.0 33.0 37.0 5 35.599434487450075 37.0 35.0 37.0 33.0 37.0 6 35.61677011378571 37.0 35.0 37.0 33.0 37.0 7 35.9785368960575 37.0 35.0 37.0 35.0 37.0 8 18.69898467797447 32.0 0.0 37.0 0.0 37.0 9 28.013846168538606 31.0 17.0 39.0 17.0 39.0 10 33.56552356926721 32.0 32.0 39.0 27.0 39.0 11 35.72276184340342 37.0 35.0 39.0 32.0 39.0 12 36.48363444293194 37.0 35.0 39.0 32.0 39.0 13 36.74538491657992 39.0 35.0 39.0 33.0 39.0 14 37.858055835732486 40.0 37.0 41.0 33.0 41.0 15 38.04916425649204 40.0 37.0 41.0 33.0 41.0 16 38.09910170336964 40.0 37.0 41.0 33.0 41.0 17 38.02852650114638 40.0 37.0 41.0 33.0 41.0 18 37.9824289270909 40.0 37.0 41.0 33.0 41.0 19 37.96979782448835 40.0 37.0 41.0 33.0 41.0 20 37.88311785625344 40.0 36.0 41.0 33.0 41.0 21 37.73758359087981 40.0 36.0 41.0 33.0 41.0 22 37.72138883358812 40.0 36.0 41.0 33.0 41.0 23 37.546605198337105 39.0 36.0 41.0 32.0 41.0 24 37.36921806025816 39.0 35.0 41.0 32.0 41.0 25 37.21375940959843 39.0 35.0 41.0 32.0 41.0 26 37.1877342987255 39.0 35.0 41.0 32.0 41.0 27 37.06535827916103 39.0 35.0 41.0 32.0 41.0 28 37.0193360039317 39.0 35.0 41.0 32.0 41.0 29 36.91548276097655 39.0 35.0 40.0 31.0 41.0 30 36.77269745372428 39.0 35.0 40.0 31.0 41.0 31 36.76952865873323 39.0 35.0 41.0 31.0 41.0 32 36.52469654573063 39.0 35.0 41.0 30.0 41.0 33 36.36551335801176 39.0 35.0 41.0 30.0 41.0 34 36.14690066358468 39.0 35.0 41.0 30.0 41.0 35 35.93281985655757 39.0 35.0 41.0 28.0 41.0 36 35.781217975041926 39.0 35.0 41.0 27.0 41.0 37 35.713024052281625 39.0 35.0 40.0 27.0 41.0 38 35.59084638084457 38.0 35.0 40.0 27.0 41.0 39 35.452528314195185 38.0 35.0 40.0 26.0 41.0 40 35.35892415975693 38.0 35.0 40.0 26.0 41.0 41 35.30541167153844 38.0 35.0 40.0 26.0 41.0 42 35.129621970507834 38.0 34.0 40.0 25.0 41.0 43 35.11256439886192 38.0 34.0 40.0 25.0 41.0 44 34.842937667999024 38.0 34.0 40.0 24.0 41.0 45 34.735317279868475 38.0 34.0 40.0 23.0 41.0 46 34.723583518886784 37.0 34.0 40.0 24.0 41.0 47 34.585686023729785 37.0 34.0 40.0 23.0 41.0 48 34.541831620070774 37.0 34.0 40.0 23.0 41.0 49 34.49285689623381 37.0 34.0 40.0 24.0 41.0 50 33.88363576525279 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 3.0 12 7.0 13 14.0 14 22.0 15 58.0 16 156.0 17 358.0 18 969.0 19 1953.0 20 3597.0 21 6028.0 22 9557.0 23 14210.0 24 21305.0 25 31010.0 26 42747.0 27 50409.0 28 53735.0 29 58293.0 30 68007.0 31 84939.0 32 107181.0 33 140410.0 34 204509.0 35 281734.0 36 305451.0 37 431816.0 38 435777.0 39 368229.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.5400755045205 23.123351231190902 27.13927638195385 17.197296882334747 2 34.08351778484811 24.669805464564373 27.26724765526802 13.979429095319498 3 28.093037025718402 24.96497686305825 33.18683732441599 13.755148786807354 4 25.02359975404832 27.440067644057674 32.08100978297041 15.455322818923586 5 23.28195627084951 30.039162735823066 31.59145721961472 15.087423773712702 6 21.528779211353154 38.07604520280361 29.26556830778928 11.129607278053955 7 82.24641008254954 4.1627394961810635 10.9277329617122 2.663117459557184 8 42.50633428417998 49.87970553383929 5.487080557990014 2.12687962399072 9 75.58679824248867 5.411561345035383 14.094507740352016 4.907132672123934 10 40.789961821658586 25.205051559493786 19.416041074224072 14.588945544623556 11 31.889052872999162 23.705466254004612 27.433015266194204 16.972465606802018 12 27.739316198503865 20.816525778277647 31.68460737722802 19.75955064599047 13 23.82623822491649 23.974705471396362 32.932437485445284 19.266618818241856 14 20.549857740315286 25.520094501863372 33.749668501509284 20.18037925631206 15 19.900671665529227 21.597429702117843 38.56107983659053 19.940818795762404 16 23.32225032562151 20.975204280205663 35.58905353415959 20.113491860013237 17 22.788473476080316 22.712990994260394 31.611953192780422 22.886582336878867 18 24.987199199555114 21.153864519413506 33.15851761955801 20.700418661473375 19 26.489135297665445 25.380112147500483 28.132339339853356 19.99841321498072 20 28.373405776925942 23.435382220514633 27.440030912922968 20.751181089636457 21 25.57214251974115 26.443625421765255 28.488006917207287 19.49622514128631 22 24.651366434942183 22.68121856274008 29.33469630330514 23.332718699012595 23 23.1041775788746 26.17736142628465 28.41825449240143 22.300206502439316 24 22.983258683423898 22.90762927706515 32.838295587194935 21.27081645231601 25 24.000270341151435 23.455033377582108 29.394972095356962 23.149724185909495 26 21.55974355790994 24.539409936359636 30.18237743004004 23.71846907569038 27 22.316698781922113 23.11758444304213 30.34910005046858 24.216616724567178 28 21.70450095978455 24.996786025713263 30.965448490827868 22.333264523674316 29 22.81921743582887 23.79611869445793 29.749096965053262 23.63556690465993 30 24.050849113640986 23.026050455355875 30.32173535511294 22.601365075890197 31 26.15469831617132 22.827298285464096 27.373694483644726 23.644308914719854 32 26.119473157988693 23.035049583358738 27.539535556840328 23.30594170181224 33 25.018383932920134 23.852427523961556 26.858503588264547 24.270684954853763 34 21.549091528845327 24.085633498207155 31.1116751380907 23.25359983485682 35 21.732637008969007 25.706835590706433 29.701383221070742 22.859144179253814 36 24.394579072215613 26.53802443795854 27.580454040902325 21.48694244892352 37 22.903478658843422 27.309598653583528 27.61446707163967 22.17245561593338 38 24.38833477931567 26.595618857176863 27.542216929673835 21.473829433833636 39 23.56695314502995 25.122186119598044 27.495641850867187 23.815218884504823 40 25.479947371630196 23.012239548706585 28.77278340457949 22.73502967508373 41 21.44003678990452 23.30990866436044 29.0747500629939 26.17530448274114 42 23.703299117056982 24.40592899283963 27.348827505449062 24.541944384654318 43 22.678022954020697 23.225243398864126 29.414953832636787 24.681779814478386 44 23.42910119647998 24.378454104079875 29.013115218957967 23.179329480482178 45 22.28569770423062 24.862276610421503 28.430118648911325 24.42190703643655 46 23.358136644228843 25.03744739183232 27.98086014032763 23.623555823611213 47 22.476736335834232 24.546095002876047 29.08415323347852 23.8930154278112 48 22.617820624238288 23.585392174652135 29.824726371412012 23.972060829697565 49 23.7364306005614 22.773303517446923 29.162096701323716 24.328169180667963 50 21.88889125600646 24.217792120877757 30.107923419991877 23.78539320312391 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1078.0 1 2155.5 2 3233.0 3 27175.5 4 51118.0 5 34429.0 6 17740.0 7 17516.5 8 17293.0 9 17767.0 10 18241.0 11 17972.0 12 17703.0 13 17245.5 14 16788.0 15 16128.5 16 15469.0 17 14888.0 18 14307.0 19 14167.0 20 14027.0 21 14063.0 22 14099.0 23 14896.5 24 15694.0 25 17605.5 26 19517.0 27 22149.5 28 24782.0 29 28250.0 30 31718.0 31 35921.0 32 40124.0 33 46195.5 34 52267.0 35 60092.5 36 67918.0 37 74519.5 38 81121.0 39 93216.0 40 105311.0 41 118118.5 42 130926.0 43 144704.0 44 158482.0 45 177691.0 46 196900.0 47 213912.5 48 230925.0 49 226588.0 50 222251.0 51 203615.5 52 184980.0 53 172446.5 54 159913.0 55 152979.0 56 146045.0 57 142462.0 58 138879.0 59 133077.0 60 127275.0 61 120586.0 62 113897.0 63 100765.0 64 87633.0 65 74630.0 66 61627.0 67 52794.0 68 43961.0 69 37114.5 70 30268.0 71 25269.0 72 20270.0 73 16824.5 74 13379.0 75 10761.5 76 8144.0 77 6077.5 78 4011.0 79 2936.5 80 1862.0 81 1312.0 82 762.0 83 534.0 84 306.0 85 232.0 86 158.0 87 100.5 88 43.0 89 34.5 90 26.0 91 15.0 92 4.0 93 6.0 94 8.0 95 4.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2722486.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.00180992088533 #Duplication Level Percentage of deduplicated Percentage of total 1 76.67224672279876 28.370118994442233 2 6.59170228791565 4.878098302250397 3 2.924361807596042 3.246200392336961 4 1.9393051553254166 2.8703120294377626 5 1.477627964177396 2.7337454532138383 6 1.181965596481443 2.624091980041933 7 0.9785071645056789 2.534457527508452 8 0.8693243185674455 2.573325855618863 9 0.7729584720062468 2.57407762121218 >10 6.505655651573799 42.551976347950436 >50 0.06723943679398359 1.6465342490201824 >100 0.016252959847408308 1.0602667864895636 >500 0.002108341781829969 0.5458118949160515 >1k 4.960804192541099E-4 0.31806139596966126 >5k 0.0 0.0 >10k+ 2.4804020962705496E-4 1.4729211695914322 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16664 0.6120876287334444 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15433 0.5668716019109006 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.673113470555955E-5 0.0 0.0 0.04532622022666049 0.0 2 3.673113470555955E-5 0.0 0.0 0.140019085497593 0.0 3 3.673113470555955E-5 0.0 0.0 0.23798102175732033 0.0 4 3.673113470555955E-5 0.0 0.0 0.3927292922718427 0.0 5 3.673113470555955E-5 0.0 0.0 0.6466883576260815 0.0 6 3.673113470555955E-5 0.0 0.0 1.2815860210116783 0.0 7 3.673113470555955E-5 0.0 0.0 1.6709727800253151 0.0 8 3.673113470555955E-5 0.0 0.0 2.63791990114917 0.0 9 3.673113470555955E-5 0.0 0.0 3.716235822700282 0.0 10 7.34622694111191E-5 0.0 0.0 4.916315455800324 0.0 11 7.34622694111191E-5 0.0 0.0 5.602379589830765 0.0 12 7.34622694111191E-5 0.0 0.0 6.207414840700742 0.0 13 7.34622694111191E-5 0.0 0.0 6.545818784743062 0.0 14 7.34622694111191E-5 0.0 0.0 6.735645288901393 0.0 15 7.34622694111191E-5 0.0 0.0 6.87522360078252 0.0 16 1.1019340411667866E-4 0.0 0.0 7.075995983083109 0.0 17 1.1019340411667866E-4 0.0 0.0 7.28352689416952 0.0 18 1.1019340411667866E-4 0.0 0.0 7.6101768751060614 0.0 19 1.1019340411667866E-4 0.0 0.0 7.768157485474672 0.0 20 1.1019340411667866E-4 0.0 0.0 7.956661668783604 0.0 21 1.1019340411667866E-4 0.0 0.0 8.14174985656492 0.0 22 1.1019340411667866E-4 0.0 0.0 8.34002452170553 0.0 23 1.1019340411667866E-4 0.0 0.0 8.552183555764842 0.0 24 1.1019340411667866E-4 0.0 0.0 8.733341512132661 0.0 25 1.1019340411667866E-4 0.0 0.0 8.892644443350672 0.0 26 1.1019340411667866E-4 0.0 0.0 9.042360548410533 0.0 27 1.1019340411667866E-4 0.0 0.0 9.202545026861479 0.0 28 1.1019340411667866E-4 0.0 0.0 9.358909467303047 0.0 29 1.1019340411667866E-4 0.0 0.0 9.529745974818603 0.0 30 1.1019340411667866E-4 0.0 0.0 9.7490675801455 0.0 31 1.469245388222382E-4 0.0 0.0 9.923136427515146 0.0 32 1.469245388222382E-4 0.0 0.0 10.134854687957992 0.0 33 1.469245388222382E-4 3.673113470555955E-5 0.0 10.318804210563433 0.0 34 1.469245388222382E-4 3.673113470555955E-5 0.0 10.50668396458237 0.0 35 1.469245388222382E-4 3.673113470555955E-5 0.0 10.712892554819382 0.0 36 1.469245388222382E-4 3.673113470555955E-5 0.0 10.901360006993608 0.0 37 1.469245388222382E-4 3.673113470555955E-5 0.0 11.099891790077157 0.0 38 1.469245388222382E-4 3.673113470555955E-5 0.0 11.347459637992628 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 17215 0.0 42.261982 1 GTTTTTA 9145 0.0 40.487698 2 AGCGATA 595 0.0 39.932774 8 GAGCGAT 2690 0.0 39.74721 7 CTATCTC 1470 0.0 39.210884 6 CGCATGA 175 0.0 37.714287 2 GTTTACG 85 0.0 36.23529 1 TATCTCT 1615 0.0 35.826622 7 TATTTTT 10770 0.0 35.62488 7 TTATTTT 10805 0.0 35.61129 6 GACCGAT 1905 0.0 35.454067 9 AGACCGA 1075 0.0 35.2 8 AGCCGAT 295 0.0 35.05085 8 TATACTA 1470 0.0 34.57143 44 ATGTCTC 2400 0.0 34.558334 8 CTAATCC 1710 0.0 34.47953 11 AGCGATG 1210 0.0 34.363636 8 TTTATTT 11260 0.0 34.30906 5 GTTACGA 200 0.0 34.100002 2 GAGACCG 1245 0.0 33.92771 7 >>END_MODULE