SRR1546716_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546716_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1058079
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4780	0.451762108500405	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4442	0.4198174238407529	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	25	4.442599E-5	44.0	2
CGCATCG	20	7.856198E-4	44.0	21
TAACGCG	20	7.856198E-4	44.0	1
GCGTTAG	80	0.0	44.0	1
TATACGA	45	4.802132E-10	44.0	2
GCCGTAA	20	7.856198E-4	44.0	37
GAGCGAT	1105	0.0	43.60181	7
CGTTTTT	5340	0.0	42.352062	1
GTATGCG	50	1.3478711E-9	39.600002	1
TAGTACG	50	1.3478711E-9	39.600002	1
GTTTTTA	3010	0.0	38.518272	2
AGCGATC	150	0.0	38.13333	8
TCGTCCC	185	0.0	38.054054	38
CGTTAGA	105	0.0	37.714287	2
GAGACCG	350	0.0	37.714287	7
AGACCGA	315	0.0	37.714287	8
AGCGATG	525	0.0	37.714287	8
AGCGATA	275	0.0	37.6	8
GACGTAG	30	1.3010256E-4	36.666664	1
TCGGGTA	30	1.3010256E-4	36.666664	5