##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546715_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1615791 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.57098411861435 31.0 31.0 34.0 30.0 34.0 2 31.947916531284058 31.0 31.0 34.0 30.0 34.0 3 32.033294528809726 33.0 31.0 34.0 30.0 34.0 4 35.73448731921393 37.0 35.0 37.0 35.0 37.0 5 35.67873753474304 37.0 35.0 37.0 33.0 37.0 6 35.71615388376343 37.0 35.0 37.0 33.0 37.0 7 36.07432273109579 37.0 35.0 37.0 35.0 37.0 8 18.48266143331656 30.0 0.0 37.0 0.0 37.0 9 27.935307227234215 30.0 17.0 39.0 17.0 39.0 10 33.65507110758755 32.0 32.0 39.0 27.0 39.0 11 35.843545359517414 37.0 35.0 39.0 32.0 39.0 12 36.68095316782926 38.0 35.0 39.0 33.0 39.0 13 36.957107076348365 39.0 37.0 39.0 33.0 39.0 14 38.15451193873465 40.0 37.0 41.0 33.0 41.0 15 38.31005618919774 40.0 37.0 41.0 33.0 41.0 16 38.346093647012516 40.0 37.0 41.0 34.0 41.0 17 38.288781779326655 40.0 37.0 41.0 33.0 41.0 18 38.24562025658021 40.0 37.0 41.0 33.0 41.0 19 38.23850361835163 40.0 37.0 41.0 34.0 41.0 20 38.15554053711154 40.0 37.0 41.0 34.0 41.0 21 38.028300689878826 40.0 36.0 41.0 33.0 41.0 22 37.999907785103396 40.0 36.0 41.0 33.0 41.0 23 37.82283228462097 39.0 36.0 41.0 33.0 41.0 24 37.645534601937996 39.0 35.0 41.0 33.0 41.0 25 37.50440620104952 39.0 35.0 41.0 33.0 41.0 26 37.472322224842195 39.0 35.0 41.0 33.0 41.0 27 37.35621129217826 39.0 35.0 41.0 33.0 41.0 28 37.32449927001698 39.0 35.0 41.0 33.0 41.0 29 37.23918254279174 39.0 35.0 41.0 32.0 41.0 30 37.11732396083404 39.0 35.0 41.0 32.0 41.0 31 37.121555324915164 39.0 35.0 41.0 32.0 41.0 32 36.87271992479225 39.0 35.0 41.0 31.0 41.0 33 36.670573112487936 39.0 35.0 41.0 30.0 41.0 34 36.44313404394504 39.0 35.0 41.0 30.0 41.0 35 36.215186246241004 39.0 35.0 41.0 29.0 41.0 36 36.06362518419771 39.0 35.0 41.0 28.0 41.0 37 36.012146372891046 39.0 35.0 41.0 28.0 41.0 38 35.92088766430807 39.0 35.0 41.0 27.0 41.0 39 35.84781633268164 39.0 35.0 41.0 27.0 41.0 40 35.76908337773883 39.0 35.0 41.0 27.0 41.0 41 35.741215293314546 39.0 35.0 41.0 27.0 41.0 42 35.58415847099037 39.0 35.0 40.0 26.0 41.0 43 35.58383788497399 39.0 35.0 40.0 26.0 41.0 44 35.34685055183498 38.0 35.0 40.0 25.0 41.0 45 35.25562216895626 38.0 35.0 40.0 24.0 41.0 46 35.23539121086824 38.0 35.0 40.0 24.0 41.0 47 35.13414544331538 38.0 34.0 40.0 24.0 41.0 48 35.09063548441599 38.0 34.0 40.0 24.0 41.0 49 35.042625562340675 38.0 34.0 40.0 24.0 41.0 50 34.446956320464714 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 3.0 13 7.0 14 13.0 15 17.0 16 59.0 17 185.0 18 416.0 19 874.0 20 1873.0 21 3071.0 22 4885.0 23 7578.0 24 11644.0 25 18060.0 26 25160.0 27 28936.0 28 28913.0 29 30569.0 30 35631.0 31 44177.0 32 56845.0 33 75374.0 34 108713.0 35 154203.0 36 172836.0 37 258322.0 38 283898.0 39 263524.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.155947767997223 24.19310418240973 27.485299769586536 17.16564828000651 2 33.96429364936431 24.828582409482415 28.071452310354495 13.135671630798784 3 27.8535404640823 25.385708919037175 33.88092890726585 12.879821709614673 4 24.843807150801062 27.49872972432697 33.35010530446078 14.307357820411179 5 22.66109911492266 30.912908909630023 32.22279366576494 14.203198309682378 6 20.806837022857536 39.26058506329098 29.203529416861464 10.72904849699002 7 84.41673459005527 3.45279804133084 10.150322659304328 1.9801447093095579 8 43.45927165085088 50.203832055012064 4.867151754156324 1.4697445399807278 9 78.3318510871765 5.657167294532523 12.205043845398322 3.8059377728926576 10 34.30103274495278 35.6969434784573 16.986540957339162 13.015482819250757 11 28.155745390338232 25.08882646332354 31.397377507363267 15.358050638974966 12 26.00169205051891 23.238587168761306 32.29935059670465 18.460370184015133 13 22.376470719294762 25.665262400892196 34.17038465989723 17.78788221991582 14 19.77811486757879 28.23811990535905 33.22409890883165 18.759666318230515 15 19.16200795771235 24.849500956497465 38.06637120766238 17.922119878127802 16 21.584536613955642 23.87270383360224 36.55553224395977 17.98722730848235 17 21.034898696675498 24.098475607303172 32.91032070360585 21.95630499241548 18 22.755294465682752 23.786987302194404 33.638447051629825 19.819271180493022 19 24.69323074580809 26.277284624063384 30.412844235424014 18.616640394704515 20 27.243436805874026 24.800979829693322 29.19368903527746 18.761894329155194 21 24.924324990051314 26.600965100065544 30.0168152935621 18.457894616321045 22 23.255482918273465 24.49301920854863 30.70378532867184 21.547712544506066 23 21.58001870291393 28.06241648827107 29.97745376722608 20.38011104158892 24 21.060087597962855 25.21761787260852 33.76742412849186 19.954870400936755 25 20.9697293771286 26.399206332997277 31.740800635725787 20.890263654148338 26 20.248348951071023 28.301308770750673 31.21975552531237 20.230586752865936 27 21.291119953013727 26.234890527302106 31.450540323593827 21.023449196090336 28 20.1255607934442 27.219733245203127 33.32516395994284 19.329542001409834 29 20.950915062653525 25.405265903820485 32.50723639381579 21.136582639710213 30 21.750152092690207 25.24218788197236 32.30553951593987 20.702120509397563 31 23.710677928024108 25.199484339249324 29.54181574225874 21.548021990467827 32 23.89993507823722 26.21861366971347 30.3750299388968 19.506421313152504 33 22.682079551130066 26.27753218083279 29.762326934609735 21.278061333427406 34 21.32683001700096 27.54626062405348 30.587804982203764 20.539104376741793 35 21.03130912351907 27.031528211259996 30.580873392660312 21.356289272560623 36 23.01869486833384 29.06656863418598 27.825999773485556 20.08873672399463 37 21.81853965023942 28.478868863609218 28.3354716049291 21.367119881222262 38 21.988734929208047 29.492923280300488 27.537719915508873 20.980621874982592 39 22.07847425811878 27.791341825768306 27.54489906182173 22.585284854291178 40 22.823063131308444 26.813616364987798 28.88350040320809 21.47982010049567 41 19.926463261647083 26.862632605330766 29.153646727825567 24.057257405196587 42 22.46206347231789 27.671957573720857 27.444638570211122 22.421340383750128 43 21.94299881605975 26.601026989257893 28.92744172977817 22.528532464904185 44 21.875972820742287 28.12071610746687 28.759474461734218 21.243836610056622 45 21.138315537096073 27.524042403999033 28.640213988071476 22.69742807083342 46 22.15713542159846 27.655990162093985 28.335719161698513 21.851155254609044 47 22.04969578367499 26.50627463576663 29.238868145694585 22.20516143486379 48 22.444672609266917 25.25227582032577 29.6600240996515 22.643027470755808 49 22.018936855075935 25.464060636555097 29.500226204998047 23.01677630337092 50 20.618260653760295 26.596694745793236 30.476837660316214 22.30820694013025 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 484.0 1 953.5 2 1423.0 3 14301.5 4 27180.0 5 19350.5 6 11521.0 7 11354.5 8 11188.0 9 11436.0 10 11684.0 11 11675.5 12 11667.0 13 11406.0 14 11145.0 15 10760.0 16 10375.0 17 10217.0 18 10059.0 19 9927.0 20 9795.0 21 10394.0 22 10993.0 23 12197.5 24 13402.0 25 16016.0 26 18630.0 27 21418.5 28 24207.0 29 28414.0 30 32621.0 31 36593.0 32 40565.0 33 44389.5 34 48214.0 35 53325.5 36 58437.0 37 62961.5 38 67486.0 39 75164.5 40 82843.0 41 91563.5 42 100284.0 43 107459.0 44 114634.0 45 121733.0 46 128832.0 47 132546.0 48 136260.0 49 130234.5 50 124209.0 51 112037.5 52 99866.0 53 90619.0 54 81372.0 55 74915.5 56 68459.0 57 65344.0 58 62229.0 59 58375.5 60 54522.0 61 48604.5 62 42687.0 63 36218.5 64 29750.0 65 24688.5 66 19627.0 67 16413.0 68 13199.0 69 11223.0 70 9247.0 71 7942.0 72 6637.0 73 5646.5 74 4656.0 75 3794.0 76 2932.0 77 2206.5 78 1481.0 79 1030.0 80 579.0 81 408.5 82 238.0 83 176.5 84 115.0 85 76.0 86 37.0 87 24.5 88 12.0 89 7.5 90 3.0 91 3.0 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1615791.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.20388070071097 #Duplication Level Percentage of deduplicated Percentage of total 1 69.00313346018552 24.981812117677933 2 7.724839489368872 5.593383346105033 3 4.361612197384539 4.73721862970627 4 3.1288477135679553 4.531057174108262 5 2.5150033248067425 4.552644016659737 6 2.0638604986954983 4.483185556660899 7 1.7269026581690332 4.376440447266463 8 1.50613094443265 4.362222802551104 9 1.2888061273145361 4.19938049516767 >10 6.63385382639904 35.20045013851642 >50 0.030483619217817448 0.7237416821963718 >100 0.015448367662388472 1.0418337840201484 >500 7.185151969659646E-4 0.19041544161945853 >1k 0.0 0.0 >5k 3.592575984829823E-4 1.026214367744213 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8184 0.5065011502106398 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7596 0.4701103051075294 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03688595864192832 0.0 2 0.0 0.0 0.0 0.10892497853992256 0.0 3 0.0 0.0 0.0 0.19470339914011156 0.0 4 0.0 0.0 0.0 0.3031951533335685 0.0 5 0.0 0.0 0.0 0.5069962637494577 0.0 6 0.0 0.0 0.0 0.9816244798986997 0.0 7 0.0 0.0 0.0 1.256350604750243 0.0 8 0.0 0.0 0.0 1.9746365711902096 0.0 9 0.0 0.0 0.0 2.7763491689209805 0.0 10 6.188919235222873E-5 0.0 0.0 3.7489378267362548 0.0 11 6.188919235222873E-5 0.0 0.0 4.25364419036868 0.0 12 6.188919235222873E-5 0.0 0.0 4.723568827899153 0.0 13 6.188919235222873E-5 0.0 0.0 5.006154880179429 0.0 14 6.188919235222873E-5 0.0 0.0 5.161991866522341 0.0 15 1.2377838470445745E-4 0.0 0.0 5.28385168626388 0.0 16 1.2377838470445745E-4 0.0 0.0 5.4575746491965855 0.0 17 1.2377838470445745E-4 0.0 0.0 5.644170564138555 0.0 18 1.2377838470445745E-4 0.0 0.0 5.927746843496467 0.0 19 1.2377838470445745E-4 0.0 0.0 6.0775805781812124 0.0 20 1.2377838470445745E-4 0.0 0.0 6.245424067840457 0.0 21 1.2377838470445745E-4 0.0 0.0 6.41933269835022 0.0 22 1.2377838470445745E-4 0.0 0.0 6.606052391676894 0.0 23 1.2377838470445745E-4 0.0 0.0 6.809544056131022 0.0 24 1.2377838470445745E-4 0.0 0.0 6.967485275013909 0.0 25 1.2377838470445745E-4 0.0 0.0 7.119732688200393 0.0 26 1.2377838470445745E-4 0.0 0.0 7.260901935955826 0.0 27 1.2377838470445745E-4 0.0 0.0 7.410116778717049 0.0 28 1.2377838470445745E-4 0.0 0.0 7.5650873163670305 0.0 29 1.2377838470445745E-4 0.0 0.0 7.727608335483983 0.0 30 1.2377838470445745E-4 0.0 0.0 7.934751462286893 0.0 31 1.2377838470445745E-4 0.0 0.0 8.117077022956558 0.0 32 1.2377838470445745E-4 0.0 0.0 8.327128941800023 0.0 33 1.2377838470445745E-4 0.0 0.0 8.507164602352656 0.0 34 1.2377838470445745E-4 0.0 0.0 8.677421770513638 0.0 35 1.2377838470445745E-4 0.0 0.0 8.858200101374496 0.0 36 1.2377838470445745E-4 0.0 0.0 9.042011002660617 0.0 37 1.2377838470445745E-4 0.0 0.0 9.234053166529582 0.0 38 1.2377838470445745E-4 0.0 0.0 9.450294004608269 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGAACG 20 7.857431E-4 44.0 1 CGTTTTT 11050 0.0 42.228054 1 TAAGCGA 110 0.0 42.0 2 GAGCGAT 1800 0.0 41.18889 7 CGTTAGA 85 0.0 38.823532 2 ACGAGAC 210 0.0 38.761906 5 TATCGCG 40 4.1259227E-7 38.5 1 TCGTAGA 75 0.0 38.13333 2 GTTTTTA 6210 0.0 38.012882 2 AGCGATA 430 0.0 37.860466 8 AGCCGAT 260 0.0 37.230766 8 AGAGCGA 1005 0.0 36.77612 6 CTATACG 60 1.9826984E-10 36.666664 1 GTTAGCG 60 1.9826984E-10 36.666664 1 AGCGATG 830 0.0 36.31325 8 AGACCGA 570 0.0 36.2807 8 GTTACGA 85 0.0 36.235294 2 GACCGAT 1085 0.0 35.8894 9 ATTGCGA 135 0.0 35.851852 2 TAGAGAT 1565 0.0 35.846645 5 >>END_MODULE